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MacroAPE 1083:CNhs12518 bu f0: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;38.826812812515385;311.3784430089703;807.3806001354742;21.248314249152934!2;180.56235654368547;260.78230073889216;575.0604741029651;162.4290...")
 
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A6;0.00318529!10809-111A8;0.00581877!10597-108E3;0.946247!10717-109I6;0.00463878!10455-106G5;0.0847741!10534-107G3;0.277189!10429-106D6;0.584133!10464-106H5;0.668964!10827-111C8;0.531091!10789-110H6;0.71607!10828-111C9;0.13977!10788-110H5;0.432479!10792-110H9;0.211186!10765-110E9;0.741827!10829-111D1;0.615482!10830-111D2;0.724603!10831-111D3;0.470526!10832-111D4;0.283601!10833-111D5;0.635679!10764-110E8;0.866446!10770-110F5;0.245719!10399-106A3;0.754782!10400-106A4;0.594244!10405-106A9;0.554786!10834-111D6;0.648581!10835-111D7;0.699991!10836-111D8;0.638184!10837-111D9;0.244344!10699-109G6;0.478989!10802-111A1;0.521599!10796-110I4;0.391597!10010-101C1;0.565594!10810-111A9;0.575167!10421-106C7;0.516549!10708-109H6;0.224049!12235-129G3;0.237317!12236-129G4;0.254881!12237-129G5;0.18402!10167-103B5;0.433162!10151-102I7;0.00247225!10428-106D5;4.6668e-05!10795-110I3;0.102289!10805-111A4;0.0707231!10052-101G7;0.576682!10189-103D9;0.846458!10589-108D4;0.214164!10425-106D2;0.581214!10427-106D4;0.622597!10702-109G9;0.71245!10432-106D9;0.604609!10496-107C1;0.62716!10718-109I7;0.178642!10011-101C2;0.207616!10053-101G8;0.8286!10686-109F2;0.110368!10084-102B3;0.00387617!10012-101C3;0.00329594!10085-102B4;0.00141403!10482-107A5;0.0212858!10419-106C5;0.0523852!10080-102A8;0.488672!10760-110E4;0.894518!10709-109H7;0.0519511!10710-109H8;0.356438!10703-109H1;0.0968633!10719-109I8;0.847648!10642-109A3;0.642154!10177-103C6;0.197909!10164-103B2;0.00297981!10173-103C2;0.000188727!10166-103B4;0.0060364!10083-102B2;0.00126267!10188-103D8;0.00703166!10552-107I3;0.00137648!10553-107I4;0.0722422!10013-101C4;0.345417!10536-107G5;0.799921!10618-108G6;0.236837!10423-106C9;0.312533!10785-110H2;0.449366!12238-129G6;0.0881296!12239-129G7;0.0952555!12240-129G8;0.0984358!10416-106C2;0.0264877!10801-110I9;0.256169!10766-110F1;0.348146!10824-111C5;0.48945!10825-111C6;0.243422!10826-111C7;0.21094!10454-106G4;0.478102!10409-106B4;0.379366!10638-108I8;0.34907!10636-108I6;0.0212217!10513-107D9;0.224085!10420-106C6;0.847978!10082-102B1;0.331282!10014-101C5;0.827547!10070-101I7;0.907401!10452-106G2;0.887349!10453-106G3;0.778993!10449-106F8;0.843635!10042-101F6;0.866535!10069-101I6;0.00604901!10193-103E4;0.841492!10631-108I1;0.00111687!10438-106E6;0.687836!10488-107B2;0.563917!10196-103E7;0.277229!10071-101I8;0.213313!10071-101I8;0.693939!10041-101F5;0.016098!10451-106G1;0.569548!10450-106F9;0.966419!10604-108F1;0.901962!10605-108F2;0.477426!10606-108F3;0.913926!10603-108E9;0.244948!10497-107C2;0.277988!10448-106F7;0.464443!10643-109A4;0.611557!10426-106D3;0.336251!10431-106D8;0.249735!10197-103E8;0.362515!10443-106F2;0.442871!10815-111B5;0.520926!10816-111B6;0.105526!10817-111B7;0.581199!10015-101C6;0.237131!10410-106B5;0.613423!10054-101G9;0.3509!10758-110E2;0.80697!10711-109H9;0.907471!10040-101F4;0.500363!10470-106I2;0.000382919!10415-106C1;0.0550111!10198-103E9;0.91029!10614-108G2;0.91528!10612-108F9;0.166429!10549-107H9;0.3018!10615-108G3;0.842649!10487-107B1;0.0916507!10433-106E1;0.0910653!10688-109F4;0.243296!10444-106F3;0.464488!10444-106F3;0.058001!10485-107A8;0.0530988!10413-106B8;0.989619!10175-103C4;0.266815!10161-103A8;0.00620219!12131-128D7;0.000503792!10624-108H3;0.000386178!10712-109I1;0.231663!10205-103F7;0.145451!10206-103F8;0.40421!10207-103F9;0.208342!10050-101G5;0.2655!10051-101G6;0.274903!10016-101C7;0.610482!10046-101G1;0.204088!10778-110G4;0.187168!10633-108I3;0.192197!10818-111B8;0.0450194!10819-111B9;0.720984!10820-111C1;0.534158!10484-107A7;0.60525!10808-111A7;0.844665!10169-103B7;0.854957!10153-102I9;0.00180781!13425-144D5;0.000140136!13433-144E4;0.30124!13437-144E8;0.385008!11904-125F5;0.242438!11905-125F6;0.195491!10039-101F3;0.374197!10791-110H8;0.000214671!10017-101C8;0.079733!10045-101F9;0.485342!10509-107D5;0.991808!10839-111E2;0.44486!10692-109F8;0.0518238!10079-102A7;0.526631!10078-102A6;0.543402!10721-110A1;0.619129!10569-108B2;0.825233!10570-108B3;0.334621!10571-108B4;0.112272!10647-109A8;0.266994!10752-110D5;0.00752532!10782-110G8;0.85952!10726-110A6;0.575421!10018-101C9;0.544229!10086-102B5;0.361852!10182-103D2;0.359406!10165-103B3;0.00169648!10499-107C4;0.00103928!10408-106B3;0.82448!10019-101D1;0.541968!10068-101I5;0.918321!10075-102A3;0.604816!10077-102A5;0.86438!10727-110A7;0.76701!10775-110G1;0.929659!10412-106B7;0.773979!12231-129F8;0.426107!12232-129F9;0.134671!12233-129G1;0.233289!12234-129G2;0.310204!10414-106B9;0.0543617!10170-103B8;0.229582!10183-103D3;0.005747!10150-102I6;0.00368427!10174-103C3;0.000321668!10155-103A2;0.214186!10038-101F2;0.00579982!10838-111E1;0.00566707!10759-110E3;0.314258!10514-107E1;0.966857!10465-106H6;0.846976!10691-109F7;0.0776565!10843-111E6;0.379572!10844-111E7;0.413832!11747-123G1;0.45645!11748-123G2;0.0195297!11749-123G3;0.00984401!11750-123G4;0.00477596!11751-123G5;0.126419!11840-124H4;0.0921132!11752-123G6;0.0338702!11753-123G7;0.165282!11754-123G8;0.174127!11755-123G9;0.0214071!11756-123H1;0.0574441!11833-124G6;0.464323!11760-123H5;0.112201!11836-124G9;0.167243!11758-123H3;0.0548482!11835-124G8;0.109678!11762-123H7;0.125642!11838-124H2;0.0198803!11757-123H2;0.152944!11759-123H4;0.00480828!11761-123H6;0.155059!11842-124H6;0.0960668!11837-124H1;0.272431!10568-108B1;0.215169!13230-141I8;0.036776!13231-141I9;0.0173865!10696-109G3;0.0110205!10493-107B7;0.0275997!10494-107B8;0.58271!10850-111F4;0.00634363!10851-111F5;0.00442287!10852-111F6;0.379392!10853-111F7;0.44887!10854-111F8;0.0123329!10855-111F9;0.811159!10856-111G1;0.0896242!10847-111F1;0.0312425!10846-111E9;0.421812!10848-111F2;0.0380932!10845-111E8;0.036707!10857-111G2;0.617118!10858-111G3;0.0712753!10156-103A3;0.38163!11901-125F2;0.000183461!11902-125F3;0.874639!11903-125F4;0.548269!10689-109F5;0.971686!10648-109A9;0.116221!10784-110H1;0.271755!10744-110C6;0.952999!10772-110F7;0.824734!10474-106I6;0.132969!10600-108E6;0.748351!10684-109E9;0.00941215!12226-129F3;0.306921!12227-129F4;0.0653201!10508-107D4;0.452318!10539-107G8;0.140934!10607-108F4;0.178505!10555-107I6;0.741232!10774-110F9;0.417263!10637-108I7;0.144025!10663-109C6;0.747617!10728-110A8;0.501628!10729-110A9;0.808872!10430-106D7;0.720703!10730-110B1;0.349514!10813-111B3;0.306666!10812-111B2;0.0671801!10037-101F1;0.568368!10172-103C1;0.000273455!10163-103B1;0.0113078!10076-102A4;0.000243161!10073-102A1;0.00266296!10036-101E9;0.0207521!10195-103E6;0.000296052!10277-104E7;0.00087966!10434-106E2;0.0091583!10550-107I1;0.620371!10545-107H5;0.60231!10544-107H4;0.0445885!10704-109H2;0.270258!10510-107D6;0.100373!10558-107I9;0.0205406!10020-101D2;0.769662!10732-110B3;0.804705!10049-101G4;0.465508!10698-109G5;0.905619!10437-106E5;0.967936!10417-106C3;0.178039!10035-101E8;0.88837!10171-103B9;0.000208046!10157-103A4;0.00666362!10034-101E7;0.000319178!10072-101I9;0.000152334!10199-103F1;0.0206915!10200-103F2;0.898603!10697-109G4;0.970719!10723-110A3;0.70284!10179-103C8;0.122442!10160-103A7;0.0553357!10180-103C9;0.072342!10162-103A9;0.0198739!10021-101D3;0.000941664!10840-111E3;0.32452!10706-109H4;0.752079!10033-101E6;0.0887922!10032-101E5;0.000218387!10490-107B4;0.00049289!10439-106E7;0.080127!10022-101D4;0.945476!10176-103C5;0.970917!10469-106I1;0.000199078!10067-101I4;0.237166!10411-106B6;0.11577!10471-106I3;0.886146!10030-101E3;0.165623!10475-106I7;0.408117!10787-110H4;0.830713!10477-106I9;0.637823!10695-109G2;0.696128!11771-123I7;0.0385172!11772-123I8;0.420774!11773-123I9;0.399907!10093-102C3;0.0300697!10442-106F1;0.772637!10442-106F1;0.420818!10201-103F3;0.849186!10639-108I9;0.470955!11843-124H7;0.74222!11841-124H5;0.547077!10693-109F9;0.14893!10436-106E4;0.619474!10483-107A6;0.182263!10282-104F3;0.14271!10023-101D5;0.327216!10066-101I3;0.441074!10065-101I2;0.515117!10800-110I8;0.264237!10610-108F7;0.0460532!10841-111E4;0.0988854!10541-107H1;0.987646!10842-111E5;0.277886!10562-108A4;0.397186!10024-101D6;0.18033!10064-101I1;0.899475!10609-108F6;0.257622!10048-101G3;0.274187!10781-110G7;0.142023!10181-103D1;0.000263447!10159-103A6;0.0769764!10056-101H2;0.0129874!10737-110B8;0.285617!10025-101D7;0.835794!10044-101F8;0.923332!10424-106D1;0.66961!10463-106H4;0.778335!10616-108G4;0.337025!10486-107A9;0.362135!10062-101H8;0.292011!10202-103F4;0.293822!10158-103A5;0.778069!10441-106E9;0.0298206!10031-101E4;0.364449!10063-101H9;0.000273331!10063-101H9;0.0178159!11763-123H8;0.973369!11765-123I1;0.236808!11768-123I4;0.103485!10807-111A6;0.0608853!10790-110H7;0.546449!10798-110I6;0.879447!10786-110H3;0.93747!10591-108D6;0.418084!10593-108D8;0.0898363!10590-108D5;0.814803!10026-101D8;0.463672!10096-102C6;0.35842!10168-103B6;0.975925!10154-103A1;0.00906108!10209-103G2;0.00186416!10061-101H7;0.527875!10027-101D9;0.967596!10043-101F7;0.455653!10783-110G9;0.395671!10028-101E1;0.801928!10060-101H6;0.568039!10203-103F5;0.341693!10059-101H5;0.20274!10047-101G2;0.194432!10029-101E2;0.845702!10058-101H4;0.432801!10418-106C4;0.710924!10492-107B6;0.994672!10694-109G1;0.0810146!10797-110I5;0.207665!10057-101H3;0.227503!10100-102D1;0.290336!10055-101H1;0.588489!10204-103F6;0.657762!10191-103E2;0.24503!10563-108A5;0.948807
|name=CNhs12518_bu_f0
|name=CNhs12518_bu_f0
|tomtom_result=SP1#MA0079.2;-1;4.85032e-06;0.00230875;0.00453851;10;GGGGGGCGGCGG;GGGGGCGGGG;-!abi4#MA0123.1;-1;1.35496e-05;0.00644962;0.00633929;10;GGGGGGCGGCGG;GGGGGCACCG;-!SP1#MA0079.2;-2;0.000127724;0.0607964;0.0398376;10;GGGGGGCGGCGG;GGGGCGGGGT;+!btd#MA0443.1;0;0.000190831;0.0908354;0.0446407;10;GGGGGGCGGCGG;AGGGGGCGGA;+!CRZ1#MA0285.1;-2;0.000889593;0.423446;0.166481;9;GGGGGGCGGCGG;GTGGCTTAG;-!PPARG::RXRA#MA0065.2;0;0.00107088;0.509739;0.167006;12;GGGGGGCGGCGG;GTAGGGCAAAGGTCA;+!Pax4#MA0068.1;0;0.00257947;1.22783;0.339466;12;GGGGGGCGGCGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!YGR067C#MA0425.1;2;0.00290231;1.3815;0.339466;12;GGGGGGCGGCGG;TGAAAAAGTGGGGT;-!Klf4#MA0039.2;-2;0.00360117;1.71416;0.345719;10;GGGGGGCGGCGG;TGGGTGGGGC;+!UGA3#MA0410.1;-3;0.00402504;1.91592;0.345719;8;GGGGGGCGGCGG;CGGCGGGA;+!CHA4#MA0283.1;-4;0.00426704;2.03111;0.345719;8;GGGGGGCGGCGG;GGCGGAGA;+!RPN4#MA0373.1;-1;0.00443365;2.11042;0.345719;7;GGGGGGCGGCGG;GGTGGCG;+!STP1#MA0394.1;-4;0.00567876;2.70309;0.389706;8;GGGGGGCGGCGG;TGCGGCGC;+!MIG1#MA0337.1;0;0.00635609;3.0255;0.389706;7;GGGGGGCGGCGG;GCGGGGG;-!Zfx#MA0146.1;-2;0.00648665;3.08764;0.389706;10;GGGGGGCGGCGG;GGGGCCGAGGCCTG;+!MSN2#MA0341.1;-1;0.00674126;3.20884;0.389706;5;GGGGGGCGGCGG;AGGGG;+!RREB1#MA0073.1;0;0.00708016;3.37016;0.389706;12;GGGGGGCGGCGG;TGGGGGGGGGTGGTTTGGGG;-!PHD1#MA0355.1;-1;0.00806529;3.83908;0.403456;10;GGGGGGCGGCGG;TGCTGCAGGT;-!MIG2#MA0338.1;1;0.00848608;4.03937;0.403456;6;GGGGGGCGGCGG;TGCGGGG;-!SUT1#MA0399.1;-4;0.00897993;4.27445;0.403456;7;GGGGGGCGGCGG;CGCGGGG;+!Macho-1#MA0118.1;1;0.00905466;4.31002;0.403456;8;GGGGGGCGGCGG;TGGGGGGTC;+!hkb#MA0450.1;-2;0.00952575;4.53426;0.405154;9;GGGGGGCGGCGG;GGGGCGTGA;+!YML081W#MA0431.1;-3;0.0100185;4.76882;0.407586;9;GGGGGGCGGCGG;GTGCGGGGT;-!STP2#MA0395.1;2;0.0107272;5.10615;0.418234;12;GGGGGGCGGCGG;TCGTCGTGCGGCGCCGATCA;-!IXR1#MA0323.1;4;0.0113734;5.41375;0.425691;11;GGGGGGCGGCGG;AAGCCGGAAGCGGGG;+!MIG3#MA0339.1;1;0.0118562;5.64355;0.426693;6;GGGGGGCGGCGG;TGCGGGG;-!TFAP2A#MA0003.1;2;0.0128399;6.1118;0.432794;7;GGGGGGCGGCGG;CCCCCGGGC;-!Egr1#MA0162.1;2;0.0129508;6.16458;0.432794;9;GGGGGGCGGCGG;TGCGTGGGCGT;+!CTCF#MA0139.1;8;0.013858;6.59642;0.447143;11;GGGGGGCGGCGG;TGGCCACCAGGGGGCGCTA;+!PLAG1#MA0163.1;0;0.0150248;7.15182;0.45856;12;GGGGGGCGGCGG;GGGGCCCAAGGGGG;+!opa#MA0456.1;2;0.015192;7.23139;0.45856;10;GGGGGGCGGCGG;CAGCGGGGGGTC;-!ADR1#MA0268.1;0;0.016387;7.80023;0.471251;7;GGGGGGCGGCGG;GTGGGGT;-!MZF1_1-4#MA0056.1;-1;0.0166197;7.91097;0.471251;6;GGGGGGCGGCGG;TGGGGA;+!ZMS1#MA0441.1;1;0.017156;8.16624;0.47215;8;GGGGGGCGGCGG;TGCGGGGAA;-!MSN4#MA0342.1;-1;0.018256;8.68987;0.488069;5;GGGGGGCGGCGG;AGGGG;+!NHLH1#MA0048.1;0;0.0204376;9.72828;0.506128;12;GGGGGGCGGCGG;GCGCAGCTGCGT;+!usp#MA0016.1;-1;0.0204959;9.75603;0.506128;10;GGGGGGCGGCGG;GGGGTCACGG;+!MET31#MA0333.1;1;0.0207218;9.8636;0.506128;8;GGGGGGCGGCGG;GGTGTGGCG;+
}}
}}

Latest revision as of 13:22, 7 September 2012

Full Name: CNhs12518_bu_f0

Motif matrix
POACGT
138.826812812515385311.3784430089703807.380600135474221.248314249152934
2180.56235654368547260.78230073889216575.0604741029651162.42903882056956
344.55182886104867680.716181500043961010.284189338560243.28197050645946
4265.8031325616827191.48447258010427715.71360601616555.832959048159306
50.00.01178.8341702061130.0
60.00.01178.8341702061130.0
783.945454823879631092.12097508932950.02.76774029290417
8393.4357672649487712.133459169567729627.7152144459264145.54972932566957
90.75717375114586250.01178.0769964549670.0
10160.15076735364119551.122979691524464.471811489257733.088611671689222
11220.3644829830476812.515227257954654767.3052793948906178.64918057021941
121.783789007547167479.032119061153521094.95195174527273.066310392138901

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SP1#MA0079.2-14.85032e-060.002308750.0045385110GGGGGGCGGCGGGGGGGCGGGG-
abi4#MA0123.1-11.35496e-050.006449620.0063392910GGGGGGCGGCGGGGGGGCACCG-
SP1#MA0079.2-20.0001277240.06079640.039837610GGGGGGCGGCGGGGGGCGGGGT+
btd#MA0443.100.0001908310.09083540.044640710GGGGGGCGGCGGAGGGGGCGGA+
CRZ1#MA0285.1-20.0008895930.4234460.1664819GGGGGGCGGCGGGTGGCTTAG-
PPARG::RXRA#MA0065.200.001070880.5097390.16700612GGGGGGCGGCGGGTAGGGCAAAGGTCA+
Pax4#MA0068.100.002579471.227830.33946612GGGGGGCGGCGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
YGR067C#MA0425.120.002902311.38150.33946612GGGGGGCGGCGGTGAAAAAGTGGGGT-
Klf4#MA0039.2-20.003601171.714160.34571910GGGGGGCGGCGGTGGGTGGGGC+
UGA3#MA0410.1-30.004025041.915920.3457198GGGGGGCGGCGGCGGCGGGA+
CHA4#MA0283.1-40.004267042.031110.3457198GGGGGGCGGCGGGGCGGAGA+
RPN4#MA0373.1-10.004433652.110420.3457197GGGGGGCGGCGGGGTGGCG+
STP1#MA0394.1-40.005678762.703090.3897068GGGGGGCGGCGGTGCGGCGC+
MIG1#MA0337.100.006356093.02550.3897067GGGGGGCGGCGGGCGGGGG-
Zfx#MA0146.1-20.006486653.087640.38970610GGGGGGCGGCGGGGGGCCGAGGCCTG+
MSN2#MA0341.1-10.006741263.208840.3897065GGGGGGCGGCGGAGGGG+
RREB1#MA0073.100.007080163.370160.38970612GGGGGGCGGCGGTGGGGGGGGGTGGTTTGGGG-
PHD1#MA0355.1-10.008065293.839080.40345610GGGGGGCGGCGGTGCTGCAGGT-
MIG2#MA0338.110.008486084.039370.4034566GGGGGGCGGCGGTGCGGGG-
SUT1#MA0399.1-40.008979934.274450.4034567GGGGGGCGGCGGCGCGGGG+
Macho-1#MA0118.110.009054664.310020.4034568GGGGGGCGGCGGTGGGGGGTC+
hkb#MA0450.1-20.009525754.534260.4051549GGGGGGCGGCGGGGGGCGTGA+
YML081W#MA0431.1-30.01001854.768820.4075869GGGGGGCGGCGGGTGCGGGGT-
STP2#MA0395.120.01072725.106150.41823412GGGGGGCGGCGGTCGTCGTGCGGCGCCGATCA-
IXR1#MA0323.140.01137345.413750.42569111GGGGGGCGGCGGAAGCCGGAAGCGGGG+
MIG3#MA0339.110.01185625.643550.4266936GGGGGGCGGCGGTGCGGGG-
TFAP2A#MA0003.120.01283996.11180.4327947GGGGGGCGGCGGCCCCCGGGC-
Egr1#MA0162.120.01295086.164580.4327949GGGGGGCGGCGGTGCGTGGGCGT+
CTCF#MA0139.180.0138586.596420.44714311GGGGGGCGGCGGTGGCCACCAGGGGGCGCTA+
PLAG1#MA0163.100.01502487.151820.4585612GGGGGGCGGCGGGGGGCCCAAGGGGG+
opa#MA0456.120.0151927.231390.4585610GGGGGGCGGCGGCAGCGGGGGGTC-
ADR1#MA0268.100.0163877.800230.4712517GGGGGGCGGCGGGTGGGGT-
MZF1_1-4#MA0056.1-10.01661977.910970.4712516GGGGGGCGGCGGTGGGGA+
ZMS1#MA0441.110.0171568.166240.472158GGGGGGCGGCGGTGCGGGGAA-
MSN4#MA0342.1-10.0182568.689870.4880695GGGGGGCGGCGGAGGGG+
NHLH1#MA0048.100.02043769.728280.50612812GGGGGGCGGCGGGCGCAGCTGCGT+
usp#MA0016.1-10.02049599.756030.50612810GGGGGGCGGCGGGGGGTCACGG+
MET31#MA0333.110.02072189.86360.5061288GGGGGGCGGCGGGGTGTGGCG+
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