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MacroAPE 1083:GTTCCTATT,motif134: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;103.684;173.512;1718.192;120.612!2;228.528;135.424;93.104;1658.944!3;112.148;173.512;110.032;1720.308!4;158.7;1608.16;156.584;192.556!5;126....")
 
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0.0176373!11693-123A1;0.691152!11292-117A5;0.21682!11369-118A1;0.818431!11441-118I1;0.185552!10007-101B4;0.225411!11520-119H8;0.975016!11600-120H7;0.797922!11681-122H7;0.951202!11216-116B1;0.668428!12179-129A1;0.296732!12180-129A2;0.000200267!12181-129A3;0.000104973!12176-128I7;0.000100436!12177-128I8;0.000131462!12182-129A4;0.000181215!12183-129A5;0.000111337!12184-129A6;0.000248784!10809-111A8;4.543e-05!10597-108E3;0.392203!10717-109I6;0.131208!10455-106G5;0.125315!10534-107G3;1.27317e-05!10429-106D6;0.0531736!10464-106H5;0.188752!10827-111C8;0.183235!10789-110H6;0.0320418!10828-111C9;0.000175778!10788-110H5;3.95101e-07!10792-110H9;0.0078671!10765-110E9;0.000208643!10829-111D1;0.000378425!10830-111D2;0.0299216!10831-111D3;0.0110985!10832-111D4;0.000120328!10833-111D5;0.000102824!10764-110E8;0.00332616!10770-110F5;0.0116003!10399-106A3;0.00233982!10400-106A4;0.0742406!10405-106A9;0.0645097!10834-111D6;0.0668366!10835-111D7;0.00770636!10836-111D8;0.855515!10837-111D9;0.518376!10699-109G6;0.0155083!10802-111A1;0.0155066!10796-110I4;0.0346495!10010-101C1;0.55689!10810-111A9;0.156153!10421-106C7;0.181539!10708-109H6;0.379695!12235-129G3;0.167272!12236-129G4;0.236963!12237-129G5;0.0188194!10167-103B5;0.138861!10151-102I7;0.948883!10428-106D5;0.8653!10795-110I3;0.00414284!10805-111A4;0.24103!10052-101G7;0.103164!10189-103D9;0.626421!10589-108D4;0.00126228!10425-106D2;0.536231!10427-106D4;0.00608304!10702-109G9;0.0306646!10432-106D9;0.000451763!10496-107C1;0.749854!10718-109I7;0.249256!10011-101C2;0.00175432!10053-101G8;0.927198!10686-109F2;0.000137296!10084-102B3;0.000433672!10012-101C3;0.833048!10085-102B4;0.807495!10482-107A5;0.841645!10419-106C5;0.122482!10080-102A8;0.342982!10760-110E4;0.479807!10709-109H7;0.991217!10710-109H8;0.859912!10703-109H1;0.135569!10719-109I8;0.0739132!10642-109A3;0.133926!10177-103C6;0.00957524!10164-103B2;0.940565!10173-103C2;0.783341!10166-103B4;0.486281!10083-102B2;0.466554!10188-103D8;0.514151!10552-107I3;0.585081!10553-107I4;0.103183!10013-101C4;0.122347!10536-107G5;0.609355!10618-108G6;2.93364e-07!10423-106C9;0.215492!10785-110H2;0.0414157!12238-129G6;0.139688!12239-129G7;0.140153!12240-129G8;0.000126643!10416-106C2;0.418146!10801-110I9;0.143049!10766-110F1;0.00249046!10824-111C5;0.0116727!10825-111C6;0.746207!10826-111C7;0.766897!10454-106G4;0.664971!10409-106B4;0.0922207!10638-108I8;0.023797!10636-108I6;0.57546!10513-107D9;0.171356!10420-106C6;0.170298!10082-102B1;0.116839!10014-101C5;0.34343!10070-101I7;0.744113!10452-106G2;0.522297!10453-106G3;0.426575!10449-106F8;0.272851!10042-101F6;0.321331!10069-101I6;0.625059!10193-103E4;0.700343!10631-108I1;0.917639!10438-106E6;0.00201181!10488-107B2;0.361488!10196-103E7;0.341245!10071-101I8;0.422274!10071-101I8;0.710492!10041-101F5;0.725608!10451-106G1;0.00475399!10450-106F9;0.349164!10604-108F1;0.187158!10605-108F2;0.18232!10606-108F3;0.218041!10603-108E9;0.294959!10497-107C2;0.130494!10448-106F7;0.443164!10643-109A4;0.128558!10426-106D3;0.878781!10431-106D8;0.179128!10197-103E8;0.299897!10443-106F2;0.555405!10815-111B5;0.0626248!10816-111B6;0.210871!10817-111B7;0.217803!10015-101C6;0.220947!10410-106B5;0.956335!10054-101G9;0.576108!10758-110E2;0.168774!10711-109H9;0.0705337!10040-101F4;0.66842!10470-106I2;0.746669!10415-106C1;0.17429!10198-103E9;0.00685982!10614-108G2;0.146297!10612-108F9;0.0215697!10549-107H9;0.157956!10615-108G3;0.0874542!10487-107B1;0.190084!10433-106E1;0.513739!10688-109F4;0.0591584!10444-106F3;0.356076!10444-106F3;0.00043584!10485-107A8;0.00018424!10413-106B8;0.00146827!10175-103C4;0.00126389!10161-103A8;0.898958!12131-128D7;0.653611!10624-108H3;0.00097768!10712-109I1;0.00213758!10205-103F7;0.0118135!10206-103F8;0.497149!10207-103F9;0.537361!10050-101G5;0.291217!10051-101G6;0.0951467!10016-101C7;0.670643!10046-101G1;0.932925!10778-110G4;0.366225!10633-108I3;0.00706727!10818-111B8;0.410206!10819-111B9;0.203246!10820-111C1;0.205679!10484-107A7;0.18704!10808-111A7;0.302087!10169-103B7;0.0638923!10153-102I9;0.766749!13425-144D5;0.808131!13433-144E4;0.480324!13437-144E8;0.40026!11904-125F5;0.412249!11905-125F6;0.00136047!10039-101F3;0.000465888!10791-110H8;0.897572!10017-101C8;0.108659!10045-101F9;0.320718!10509-107D5;0.387477!10839-111E2;0.523204!10692-109F8;0.0868768!10079-102A7;0.191926!10078-102A6;0.500432!10721-110A1;0.916142!10569-108B2;0.301771!10570-108B3;0.10642!10571-108B4;0.00243762!10647-109A8;0.00689841!10752-110D5;0.00870736!10782-110G8;0.0295288!10726-110A6;0.000529736!10018-101C9;0.16737!10086-102B5;0.927704!10182-103D2;0.505392!10165-103B3;0.752449!10499-107C4;0.918671!10408-106B3;0.366088!10019-101D1;0.385736!10068-101I5;0.0136067!10075-102A3;0.530755!10077-102A5;0.00315648!10727-110A7;1.50321e-05!10775-110G1;0.0131677!10412-106B7;0.000121631!12231-129F8;0.45521!12232-129F9;0.734324!12233-129G1;0.550895!12234-129G2;0.64704!10414-106B9;0.679356!10170-103B8;0.351867!10183-103D3;0.546606!10150-102I6;0.64081!10174-103C3;0.800832!10155-103A2;0.913566!10038-101F2;0.931558!10838-111E1;0.79232!10759-110E3;0.122225!10514-107E1;0.266178!10465-106H6;0.975249!10691-109F7;0.5736!10843-111E6;0.0160994!10844-111E7;0.0628612!11747-123G1;0.0432477!11748-123G2;0.00104422!11749-123G3;0.000731553!11750-123G4;0.00437465!11751-123G5;0.00250261!11840-124H4;0.00252528!11752-123G6;0.00338135!11753-123G7;0.00975312!11754-123G8;0.00164026!11755-123G9;0.00263128!11756-123H1;0.00617547!11833-124G6;2.33578e-05!11760-123H5;0.0264673!11836-124G9;3.67945e-05!11758-123H3;0.000153299!11835-124G8;4.50337e-05!11762-123H7;0.000333787!11838-124H2;4.13298e-06!11757-123H2;0.00121949!11759-123H4;0.000885679!11761-123H6;9.95094e-06!11842-124H6;1.37177e-06!11837-124H1;0.000272383!10568-108B1;0.000341709!13230-141I8;0.00294945!13231-141I9;0.0334855!10696-109G3;0.0509658!10493-107B7;4.52076e-05!10494-107B8;0.0485007!10850-111F4;0.0939333!10851-111F5;0.00431626!10852-111F6;0.0014714!10853-111F7;0.000494928!10854-111F8;0.0605875!10855-111F9;0.00907642!10856-111G1;0.334913!10847-111F1;5.2668e-05!10846-111E9;0.00953818!10848-111F2;0.0986631!10845-111E8;0.000623914!10857-111G2;0.327934!10858-111G3;0.00760997!10156-103A3;0.0787324!11901-125F2;0.936708!11902-125F3;0.0409401!11903-125F4;0.00878383!10689-109F5;0.0360145!10648-109A9;0.00299167!10784-110H1;0.121674!10744-110C6;0.461051!10772-110F7;0.0371582!10474-106I6;0.000600759!10600-108E6;0.00300597!10684-109E9;0.00496774!12226-129F3;0.15921!12227-129F4;0.41832!10508-107D4;0.750115!10539-107G8;0.167155!10607-108F4;0.126554!10555-107I6;0.17785!10774-110F9;0.152339!10637-108I7;0.120629!10663-109C6;0.0683423!10728-110A8;0.155308!10729-110A9;0.188713!10430-106D7;0.00172596!10730-110B1;0.0575615!10813-111B3;0.212206!10812-111B2;0.0648989!10037-101F1;0.00837828!10172-103C1;0.970318!10163-103B1;0.414316!10076-102A4;0.949902!10073-102A1;0.715503!10036-101E9;0.751577!10195-103E6;0.830521!10277-104E7;0.681631!10434-106E2;0.535639!10550-107I1;0.144337!10545-107H5;0.29922!10544-107H4;0.340479!10704-109H2;0.264074!10510-107D6;0.0121939!10558-107I9;0.713652!10020-101D2;0.0137446!10732-110B3;0.785544!10049-101G4;0.000435245!10698-109G5;0.951191!10437-106E5;0.157198!10417-106C3;0.00971812!10035-101E8;0.924786!10171-103B9;0.71011!10157-103A4;0.555808!10034-101E7;0.763898!10072-101I9;0.712723!10199-103F1;0.630884!10200-103F2;0.311643!10697-109G4;0.471714!10723-110A3;0.0517013!10179-103C8;0.388691!10160-103A7;0.420522!10180-103C9;0.589545!10162-103A9;0.231995!10021-101D3;0.664652!10840-111E3;0.943723!10706-109H4;0.00506108!10033-101E6;0.0155802!10032-101E5;0.842109!10490-107B4;0.69358!10439-106E7;0.517522!10022-101D4;0.924789!10176-103C5;0.853141!10469-106I1;0.895605!10067-101I4;0.268384!10411-106B6;0.310217!10471-106I3;0.000271159!10030-101E3;0.00429425!10475-106I7;0.898717!10787-110H4;0.14256!10477-106I9;0.168142!10695-109G2;0.060571!11771-123I7;0.00489168!11772-123I8;0.00875116!11773-123I9;0.00259099!10093-102C3;0.00976754!10442-106F1;0.810474!10442-106F1;0.486526!10201-103F3;0.762929!10639-108I9;0.950328!11843-124H7;0.0285689!11841-124H5;0.0135968!10693-109F9;0.061344!10436-106E4;0.179557!10483-107A6;0.703037!10282-104F3;0.575778!10023-101D5;0.328734!10066-101I3;0.613991!10065-101I2;0.703716!10800-110I8;0.212259!10610-108F7;0.140586!10841-111E4;0.350362!10541-107H1;0.211632!10842-111E5;0.155597!10562-108A4;0.0136011!10024-101D6;0.871013!10064-101I1;0.471346!10609-108F6;0.707308!10048-101G3;0.338068!10781-110G7;0.93017!10181-103D1;0.114587!10159-103A6;0.775253!10056-101H2;0.314171!10737-110B8;0.500693!10025-101D7;0.0015887!10044-101F8;9.07176e-06!10424-106D1;0.00104185!10463-106H4;0.00475102!10616-108G4;0.193539!10486-107A9;0.714882!10062-101H8;0.887077!10202-103F4;0.949326!10158-103A5;0.978406!10441-106E9;0.560523!10031-101E4;0.255275!10063-101H9;0.920677!10063-101H9;0.695871!11763-123H8;0.842973!11765-123I1;0.00195121!11768-123I4;0.0384186!10807-111A6;0.00596322!10790-110H7;0.462267!10798-110I6;0.130752!10786-110H3;0.508604!10591-108D6;0.0444545!10593-108D8;0.0448989!10590-108D5;0.10385!10026-101D8;0.0390149!10096-102C6;0.901537!10168-103B6;0.886338!10154-103A1;0.804389!10209-103G2;0.70535!10061-101H7;0.90312!10027-101D9;0.348476!10043-101F7;0.00160423!10783-110G9;0.00151837!10028-101E1;0.0778359!10060-101H6;0.679618!10203-103F5;0.426476!10059-101H5;0.289378!10047-101G2;0.125486!10029-101E2;0.00361447!10058-101H4;0.183615!10418-106C4;0.158624!10492-107B6;0.059208!10694-109G1;0.161036!10797-110I5;0.00165718!10057-101H3;0.844885!10100-102D1;0.213405!10055-101H1;0.643412!10204-103F6;0.0780315!10191-103E2;0.219527!10563-108A5;0.00317044
|name=GTTCCTATT,motif134,CNhs13467,T:2116.0(37.18%),B:22451.8(28.27%),P:1e-47
|name=GTTCCTATT,motif134,CNhs13467,T:2116.0(37.18%),B:22451.8(28.27%),P:1e-47
|tomtom_result=PEND#MA0127.1;1;0.00222392;1.05859;1;9;GTTCCTATT;ACTTCTTATT;+!YBR239C#MA0420.1;0;0.00262741;1.25065;1;8;GTTCCTATT;GTTCCGGT;-!br_Z2#MA0011.1;-2;0.00497213;2.36674;1;7;GTTCCTATT;TACTATTT;+!SPIB#MA0081.1;-1;0.00651193;3.09968;1;7;GTTCCTATT;TTCCTCT;-!SPI1#MA0080.1;0;0.00929558;4.4247;1;6;GTTCCTATT;CTTCCG;-!squamosa#MA0082.1;0;0.0108236;5.15202;1;9;GTTCCTATT;ATTTCCATTTTTGG;-!AZF1#MA0277.1;0;0.0139942;6.66125;1;9;GTTCCTATT;TTTCTTTTT;-!RFX1#MA0365.1;1;0.0168093;8.00123;1;7;GTTCCTATT;GGTTGCTA;+!MCM1#MA0331.1;-1;0.0172871;8.22866;1;8;GTTCCTATT;TTCCTAATTGGG;-
}}
}}

Latest revision as of 13:40, 7 September 2012

Full Name: GTTCCTATT,motif134,CNhs13467,T:2116.0(37.18%),B:22451.8(28.27%),P:1e-47

Motif matrix
POACGT
1103.684173.5121718.192120.612
2228.528135.42493.1041658.944
3112.148173.512110.0321720.308
4158.71608.16156.584192.556
5126.961684.336146.004158.7
6152.352122.728167.1641673.756
71580.652162.932162.932209.484
8158.7215.832137.541603.928
9349.1446.552143.8881576.42

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

PEND#MA0127.110.002223921.0585919GTTCCTATTACTTCTTATT+
YBR239C#MA0420.100.002627411.2506518GTTCCTATTGTTCCGGT-
br_Z2#MA0011.1-20.004972132.3667417GTTCCTATTTACTATTT+
SPIB#MA0081.1-10.006511933.0996817GTTCCTATTTTCCTCT-
SPI1#MA0080.100.009295584.424716GTTCCTATTCTTCCG-
squamosa#MA0082.100.01082365.1520219GTTCCTATTATTTCCATTTTTGG-
AZF1#MA0277.100.01399426.6612519GTTCCTATTTTTCTTTTT-
RFX1#MA0365.110.01680938.0012317GTTCCTATTGGTTGCTA+
MCM1#MA0331.1-10.01728718.2286618GTTCCTATTTTCCTAATTGGG-