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MacroAPE 1083:HES1 f1: Difference between revisions

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9!10828-111C9;0.657355!10788-110H5;0.64095!10792-110H9;0.266782!10765-110E9;0.411662!10829-111D1;0.265452!10830-111D2;0.334167!10831-111D3;0.392!10832-111D4;0.903275!10833-111D5;0.409284!10764-110E8;0.392029!10770-110F5;0.90068!10399-106A3;0.372216!10400-106A4;0.524443!10405-106A9;0.637104!10834-111D6;0.436779!10835-111D7;0.513913!10836-111D8;0.609781!10837-111D9;0.545285!10699-109G6;0.289784!10802-111A1;0.554197!10796-110I4;0.857641!10010-101C1;0.711972!10810-111A9;0.609157!10421-106C7;0.843559!10708-109H6;0.946963!12235-129G3;0.803493!12236-129G4;0.500686!12237-129G5;0.503503!10167-103B5;0.905348!10151-102I7;0.440331!10428-106D5;0.728279!10795-110I3;0.467869!10805-111A4;0.616996!10052-101G7;0.639899!10189-103D9;0.512574!10589-108D4;0.677247!10425-106D2;0.0330751!10427-106D4;0.868924!10702-109G9;0.0977769!10432-106D9;0.444548!10496-107C1;0.944732!10718-109I7;0.27348!10011-101C2;0.554799!10053-101G8;0.617894!10686-109F2;0.389196!10084-102B3;0.253972!10012-101C3;0.672254!10085-102B4;0.583968!10482-107A5;0.741722!10419-106C5;0.0442454!10080-102A8;0.282636!10760-110E4;0.387099!10709-109H7;0.428212!10710-109H8;0.529045!10703-109H1;0.981017!10719-109I8;0.0672777!10642-109A3;0.00272929!10177-103C6;0.25624!10164-103B2;0.389341!10173-103C2;0.722299!10166-103B4;0.437757!10083-102B2;0.579982!10188-103D8;0.431784!10552-107I3;0.661495!10553-107I4;0.129294!10013-101C4;0.688134!10536-107G5;0.436911!10618-108G6;0.752199!10423-106C9;0.631563!10785-110H2;0.596659!12238-129G6;0.97368!12239-129G7;0.438456!12240-129G8;0.0633443!10416-106C2;0.337592!10801-110I9;0.347431!10766-110F1;0.598235!10824-111C5;0.285334!10825-111C6;0.309295!10826-111C7;0.464385!10454-106G4;0.410843!10409-106B4;0.17117!10638-108I8;0.381405!10636-108I6;0.88037!10513-107D9;0.412951!10420-106C6;0.715866!10082-102B1;0.187183!10014-101C5;0.330871!10070-101I7;0.613417!10452-106G2;0.454261!10453-106G3;0.225328!10449-106F8;0.145896!10042-101F6;0.207895!10069-101I6;0.713885!10193-103E4;0.95862!10631-108I1;0.57387!10438-106E6;0.348736!10488-107B2;0.808496!10196-103E7;0.925249!10071-101I8;0.472199!10071-101I8;0.905721!10041-101F5;0.458985!10451-106G1;0.601357!10450-106F9;0.315407!10604-108F1;0.722064!10605-108F2;0.60847!10606-108F3;0.832304!10603-108E9;0.606524!10497-107C2;0.437541!10448-106F7;0.567998!10643-109A4;0.82216!10426-106D3;0.63212!10431-106D8;0.444337!10197-103E8;0.904519!10443-106F2;0.834684!10815-111B5;0.863585!10816-111B6;0.564954!10817-111B7;0.504171!10015-101C6;0.665406!10410-106B5;0.489162!10054-101G9;0.760162!10758-110E2;0.900984!10711-109H9;0.59528!10040-101F4;0.841876!10470-106I2;0.636399!10415-106C1;0.9765!10198-103E9;0.445657!10614-108G2;0.459289!10612-108F9;0.855796!10549-107H9;0.685627!10615-108G3;0.254866!10487-107B1;0.0110346!10433-106E1;0.14569!10688-109F4;0.322707!10444-106F3;0.833768!10444-106F3;0.39388!10485-107A8;0.407761!10413-106B8;0.758618!10175-103C4;0.0592964!10161-103A8;0.513406!12131-128D7;0.666085!10624-108H3;0.27624!10712-109I1;0.575464!10205-103F7;0.155862!10206-103F8;0.932894!10207-103F9;0.669356!10050-101G5;0.561687!10051-101G6;0.645256!10016-101C7;0.639839!10046-101G1;0.597365!10778-110G4;0.53845!10633-108I3;0.286713!10818-111B8;0.643108!10819-111B9;0.895715!10820-111C1;0.834622!10484-107A7;0.771846!10808-111A7;0.522309!10169-103B7;0.295571!10153-102I9;0.50194!13425-144D5;0.702957!13433-144E4;0.65488!13437-144E8;0.406527!11904-125F5;0.96406!11905-125F6;0.714287!10039-101F3;0.746017!10791-110H8;0.676469!10017-101C8;0.450321!10045-101F9;0.336645!10509-107D5;0.203285!10839-111E2;0.93545!10692-109F8;0.190008!10079-102A7;0.642453!10078-102A6;0.988171!10721-110A1;0.452794!10569-108B2;0.257098!10570-108B3;0.508214!10571-108B4;0.330728!10647-109A8;0.438983!10752-110D5;0.293671!10782-110G8;0.404121!10726-110A6;0.286991!10018-101C9;0.0765944!10086-102B5;0.429264!10182-103D2;0.744339!10165-103B3;0.811113!10499-107C4;0.69288!10408-106B3;0.448596!10019-101D1;0.260652!10068-101I5;0.558225!10075-102A3;0.730724!10077-102A5;0.361597!10727-110A7;0.141563!10775-110G1;0.879237!10412-106B7;0.43824!12231-129F8;0.991432!12232-129F9;0.67!12233-129G1;0.606135!12234-129G2;0.539586!10414-106B9;0.93727!10170-103B8;0.756852!10183-103D3;0.500624!10150-102I6;0.547641!10174-103C3;0.660211!10155-103A2;0.677785!10038-101F2;0.669966!10838-111E1;0.771731!10759-110E3;0.0506353!10514-107E1;0.161747!10465-106H6;0.136358!10691-109F7;0.784401!10843-111E6;0.0955714!10844-111E7;0.0483809!11747-123G1;0.0200445!11748-123G2;0.549831!11749-123G3;0.41727!11750-123G4;0.329045!11751-123G5;0.0763059!11840-124H4;0.377382!11752-123G6;0.940747!11753-123G7;0.656377!11754-123G8;0.344283!11755-123G9;0.236376!11756-123H1;0.387004!11833-124G6;0.865923!11760-123H5;0.946586!11836-124G9;0.233871!11758-123H3;0.236548!11835-124G8;0.804009!11762-123H7;0.823414!11838-124H2;0.647605!11757-123H2;0.129092!11759-123H4;0.609611!11761-123H6;0.500044!11842-124H6;0.937048!11837-124H1;0.183096!10568-108B1;0.397409!13230-141I8;0.801913!13231-141I9;0.662401!10696-109G3;0.779804!10493-107B7;0.271883!10494-107B8;0.137199!10850-111F4;0.539656!10851-111F5;0.868117!10852-111F6;0.683433!10853-111F7;0.78812!10854-111F8;0.506155!10855-111F9;0.91048!10856-111G1;0.333354!10847-111F1;0.997876!10846-111E9;0.515335!10848-111F2;0.580253!10845-111E8;0.81532!10857-111G2;0.959183!10858-111G3;0.993954!10156-103A3;0.928139!11901-125F2;0.661294!11902-125F3;0.466497!11903-125F4;0.607162!10689-109F5;0.93938!10648-109A9;0.624332!10784-110H1;0.512671!10744-110C6;0.815124!10772-110F7;0.874147!10474-106I6;0.260375!10600-108E6;0.261255!10684-109E9;0.40121!12226-129F3;0.219594!12227-129F4;0.952088!10508-107D4;0.373231!10539-107G8;0.320199!10607-108F4;0.199845!10555-107I6;0.00722925!10774-110F9;0.143057!10637-108I7;0.103463!10663-109C6;0.0478472!10728-110A8;0.00791321!10729-110A9;0.130008!10430-106D7;0.560327!10730-110B1;0.491298!10813-111B3;0.0335635!10812-111B2;0.82326!10037-101F1;0.0559983!10172-103C1;0.679749!10163-103B1;0.562187!10076-102A4;0.658391!10073-102A1;0.555096!10036-101E9;0.560928!10195-103E6;0.724185!10277-104E7;0.636092!10434-106E2;0.747702!10550-107I1;0.194991!10545-107H5;0.500935!10544-107H4;0.955005!10704-109H2;0.860463!10510-107D6;0.0110325!10558-107I9;0.171801!10020-101D2;0.249448!10732-110B3;0.547098!10049-101G4;0.686922!10698-109G5;0.813999!10437-106E5;0.977151!10417-106C3;0.9693!10035-101E8;0.793074!10171-103B9;0.686444!10157-103A4;0.449796!10034-101E7;0.605307!10072-101I9;0.700374!10199-103F1;0.436849!10200-103F2;0.886236!10697-109G4;0.916457!10723-110A3;0.000134213!10179-103C8;0.952251!10160-103A7;0.734589!10180-103C9;0.893376!10162-103A9;0.48602!10021-101D3;0.593817!10840-111E3;0.139081!10706-109H4;0.25328!10033-101E6;0.626181!10032-101E5;0.685862!10490-107B4;0.690774!10439-106E7;0.99788!10022-101D4;0.53711!10176-103C5;0.643676!10469-106I1;0.716097!10067-101I4;0.683602!10411-106B6;0.53632!10471-106I3;0.488946!10030-101E3;0.567206!10475-106I7;0.91423!10787-110H4;0.173571!10477-106I9;0.601602!10695-109G2;0.419148!11771-123I7;0.0667345!11772-123I8;0.360305!11773-123I9;0.201727!10093-102C3;0.0258971!10442-106F1;0.553222!10442-106F1;0.564408!10201-103F3;0.55679!10639-108I9;0.976021!11843-124H7;0.310964!11841-124H5;0.8964!10693-109F9;0.842972!10436-106E4;0.491282!10483-107A6;0.611842!10282-104F3;0.52993!10023-101D5;0.187038!10066-101I3;0.544263!10065-101I2;0.474448!10800-110I8;0.869727!10610-108F7;0.103157!10841-111E4;0.533128!10541-107H1;0.0440446!10842-111E5;0.5887!10562-108A4;0.0418931!10024-101D6;0.0025123!10064-101I1;0.616555!10609-108F6;0.688347!10048-101G3;0.231758!10781-110G7;0.531606!10181-103D1;0.532978!10159-103A6;0.639926!10056-101H2;0.595889!10737-110B8;0.943565!10025-101D7;0.389892!10044-101F8;0.244502!10424-106D1;0.166961!10463-106H4;0.534918!10616-108G4;0.622692!10486-107A9;0.69325!10062-101H8;0.111691!10202-103F4;0.362227!10158-103A5;0.895921!10441-106E9;0.593287!10031-101E4;0.993838!10063-101H9;0.69255!10063-101H9;0.588212!11763-123H8;0.637661!11765-123I1;0.532366!11768-123I4;0.134387!10807-111A6;0.317728!10790-110H7;0.0129395!10798-110I6;0.153084!10786-110H3;0.574318!10591-108D6;0.490655!10593-108D8;0.837135!10590-108D5;0.842869!10026-101D8;0.89832!10096-102C6;0.240316!10168-103B6;0.10723!10154-103A1;0.518766!10209-103G2;0.571361!10061-101H7;0.942058!10027-101D9;0.723276!10043-101F7;0.605277!10783-110G9;0.622974!10028-101E1;0.899222!10060-101H6;0.464692!10203-103F5;0.541368!10059-101H5;0.896977!10047-101G2;0.817161!10029-101E2;0.480159!10058-101H4;0.732399!10418-106C4;0.844008!10492-107B6;0.787449!10694-109G1;0.0598796!10797-110I5;0.23714!10057-101H3;0.374748!10100-102D1;0.820218!10055-101H1;0.383688!10204-103F6;0.395059!10191-103E2;0.248873!10563-108A5;0.619555
|name=HES1_f1
|name=HES1_f1
|tomtom_result=h#MA0449.1;-1;5.82066e-06;0.00277063;0.00270941;10;GGGCTCGTGGCGG;GGCACGTGCC;+!Mycn#MA0104.2;-1;0.000174101;0.0828723;0.0540274;10;GGGCTCGTGGCGG;CGCACGTGGC;+!Myc#MA0147.1;-1;0.000253597;0.120712;0.0590224;10;GGGCTCGTGGCGG;CGCACGTGGC;+!RTG3#MA0376.1;4;0.000509662;0.242599;0.0790795;13;GGGCTCGTGGCGG;ATATTAGCACGTGCTTAGTC;+!HAC1#MA0310.1;-3;0.00152914;0.727872;0.161577;8;GGGCTCGTGGCGG;CACGTGTC;-!USF1#MA0093.1;-3;0.00217272;1.03422;0.161577;7;GGGCTCGTGGCGG;CACGTGG;+!Mycn#MA0104.2;-3;0.00225443;1.07311;0.161577;6;GGGCTCGTGGCGG;CACGTG;+!PHO4#MA0357.1;-2;0.00229923;1.09443;0.161577;8;GGGCTCGTGGCGG;GCACGTGC;+!Arnt::Ahr#MA0006.1;-3;0.00242982;1.15659;0.161577;6;GGGCTCGTGGCGG;TGCGTG;+!MYC::MAX#MA0059.1;0;0.00294575;1.40218;0.182826;11;GGGCTCGTGGCGG;GAGCACGTGGT;+!Arnt#MA0004.1;-3;0.0032765;1.55961;0.190644;6;GGGCTCGTGGCGG;CACGTG;+!MAX#MA0058.1;-2;0.00409774;1.95053;0.211936;10;GGGCTCGTGGCGG;TCACGTGGTC;-!Gamyb#MA0034.1;-1;0.00514088;2.44706;0.249302;10;GGGCTCGTGGCGG;GGCGGTTGTC;-!TYE7#MA0409.1;-2;0.00535577;2.54935;0.249302;7;GGGCTCGTGGCGG;TCACGTG;-!ceh-22#MA0264.1;0;0.00645278;3.07152;0.25309;11;GGGCTCGTGGCGG;TTTCAAGTGGT;-!MET32#MA0334.1;-5;0.00652459;3.1057;0.25309;7;GGGCTCGTGGCGG;TGTGGCG;-!CBF1#MA0281.1;-2;0.00704413;3.353;0.262313;8;GGGCTCGTGGCGG;TCACGTGC;-!TFAP2A#MA0003.1;-2;0.00784254;3.73305;0.277748;9;GGGCTCGTGGCGG;CCCCCGGGC;-!YGR067C#MA0425.1;1;0.00805531;3.83433;0.277748;13;GGGCTCGTGGCGG;TGAAAAAGTGGGGT;-!MET31#MA0333.1;-3;0.00876508;4.17218;0.291428;9;GGGCTCGTGGCGG;GGTGTGGCG;+!HIF1A::ARNT#MA0259.1;-2;0.0111041;5.28556;0.336579;8;GGGCTCGTGGCGG;GCACGTCC;-!Pax4#MA0068.1;8;0.0112077;5.33486;0.336579;13;GGGCTCGTGGCGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!MBP1#MA0329.1;-1;0.0122763;5.84354;0.349779;7;GGGCTCGTGGCGG;TACGCGT;-!CREB1#MA0018.1;-2;0.0146739;6.98476;0.39031;11;GGGCTCGTGGCGG;CCTGGTGACGTC;+!CRZ1#MA0285.1;-6;0.0174921;8.32623;0.449278;7;GGGCTCGTGGCGG;GTGGCTTAG;-!INSM1#MA0155.1;0;0.017856;8.49945;0.449278;12;GGGCTCGTGGCGG;TGTCAGGGGGCG;+!id1#MA0120.1;0;0.0196669;9.36146;0.450086;12;GGGCTCGTGGCGG;TTTTCCTTTTCG;+!RREB1#MA0073.1;3;0.0202924;9.65919;0.450086;13;GGGCTCGTGGCGG;TGGGGGGGGGTGGTTTGGGG;-!RSC3#MA0374.1;-3;0.0208945;9.94577;0.450086;7;GGGCTCGTGGCGG;CGCGCGG;+!YPR022C#MA0436.1;-5;0.0208945;9.94577;0.450086;7;GGGCTCGTGGCGG;CGTGGGG;-
}}
}}

Latest revision as of 13:55, 7 September 2012

Full Name: HES1_f1

Motif matrix
POACGT
11.51666666666666774.43333333333332411.66666666666667710.383333333333324
23.96666666666667572.916666666666676315.9833333333333245.133333333333324
30.04.78333333333332413.659.566666666666677
41.0524.7333333333333240.02.2166666666666677
52.56666666666666783.2666666666666768.7513.416666666666677
64.899999999999999520.1833333333333232.91666666666667630.0
70.03.520.4166666666666754.083333333333324
80.58333333333333240.00.027.416666666666675
90.00.028.00.0
101.98333333333333256.649999999999999511.97.466666666666676
111.516666666666667719.5999999999999985.3666666666666761.5166666666666677
121.98333333333333250.933333333333332313.29999999999999911.783333333333324
133.09166666666667576.1259.9758.808333333333323

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
h#MA0449.1-15.82066e-060.002770630.0027094110GGGCTCGTGGCGGGGCACGTGCC+
Mycn#MA0104.2-10.0001741010.08287230.054027410GGGCTCGTGGCGGCGCACGTGGC+
Myc#MA0147.1-10.0002535970.1207120.059022410GGGCTCGTGGCGGCGCACGTGGC+
RTG3#MA0376.140.0005096620.2425990.079079513GGGCTCGTGGCGGATATTAGCACGTGCTTAGTC+
HAC1#MA0310.1-30.001529140.7278720.1615778GGGCTCGTGGCGGCACGTGTC-
USF1#MA0093.1-30.002172721.034220.1615777GGGCTCGTGGCGGCACGTGG+
Mycn#MA0104.2-30.002254431.073110.1615776GGGCTCGTGGCGGCACGTG+
PHO4#MA0357.1-20.002299231.094430.1615778GGGCTCGTGGCGGGCACGTGC+
Arnt::Ahr#MA0006.1-30.002429821.156590.1615776GGGCTCGTGGCGGTGCGTG+
MYC::MAX#MA0059.100.002945751.402180.18282611GGGCTCGTGGCGGGAGCACGTGGT+
Arnt#MA0004.1-30.00327651.559610.1906446GGGCTCGTGGCGGCACGTG+
MAX#MA0058.1-20.004097741.950530.21193610GGGCTCGTGGCGGTCACGTGGTC-
Gamyb#MA0034.1-10.005140882.447060.24930210GGGCTCGTGGCGGGGCGGTTGTC-
TYE7#MA0409.1-20.005355772.549350.2493027GGGCTCGTGGCGGTCACGTG-
ceh-22#MA0264.100.006452783.071520.2530911GGGCTCGTGGCGGTTTCAAGTGGT-
MET32#MA0334.1-50.006524593.10570.253097GGGCTCGTGGCGGTGTGGCG-
CBF1#MA0281.1-20.007044133.3530.2623138GGGCTCGTGGCGGTCACGTGC-
TFAP2A#MA0003.1-20.007842543.733050.2777489GGGCTCGTGGCGGCCCCCGGGC-
YGR067C#MA0425.110.008055313.834330.27774813GGGCTCGTGGCGGTGAAAAAGTGGGGT-
MET31#MA0333.1-30.008765084.172180.2914289GGGCTCGTGGCGGGGTGTGGCG+
HIF1A::ARNT#MA0259.1-20.01110415.285560.3365798GGGCTCGTGGCGGGCACGTCC-
Pax4#MA0068.180.01120775.334860.33657913GGGCTCGTGGCGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
MBP1#MA0329.1-10.01227635.843540.3497797GGGCTCGTGGCGGTACGCGT-
CREB1#MA0018.1-20.01467396.984760.3903111GGGCTCGTGGCGGCCTGGTGACGTC+
CRZ1#MA0285.1-60.01749218.326230.4492787GGGCTCGTGGCGGGTGGCTTAG-
INSM1#MA0155.100.0178568.499450.44927812GGGCTCGTGGCGGTGTCAGGGGGCG+
id1#MA0120.100.01966699.361460.45008612GGGCTCGTGGCGGTTTTCCTTTTCG+
RREB1#MA0073.130.02029249.659190.45008613GGGCTCGTGGCGGTGGGGGGGGGTGGTTTGGGG-
RSC3#MA0374.1-30.02089459.945770.4500867GGGCTCGTGGCGGCGCGCGG+
YPR022C#MA0436.1-50.02089459.945770.4500867GGGCTCGTGGCGGCGTGGGG-
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