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MacroAPE 1083:GCGGACTGAA,motif633: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.326;179.102;2142.246;2.326!2;2.326;2319.022;2.326;2.326!3;120.952;81.41;2079.444;44.194!4;234.926;525.676;1563.072;2.326!5;2319.022;2.326;...")
 
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89-110H6;0.581012!10828-111C9;0.756317!10788-110H5;0.964336!10792-110H9;0.557759!10765-110E9;0.706655!10829-111D1;0.533219!10830-111D2;0.537504!10831-111D3;0.974016!10832-111D4;0.986263!10833-111D5;0.651225!10764-110E8;0.61344!10770-110F5;0.888835!10399-106A3;0.921873!10400-106A4;0.578553!10405-106A9;0.49379!10834-111D6;0.588455!10835-111D7;0.621139!10836-111D8;0.782157!10837-111D9;0.947529!10699-109G6;0.344449!10802-111A1;0.863845!10796-110I4;0.872268!10010-101C1;0.665335!10810-111A9;0.424781!10421-106C7;0.303034!10708-109H6;0.886755!12235-129G3;0.52906!12236-129G4;0.911308!12237-129G5;0.675421!10167-103B5;0.338791!10151-102I7;0.110864!10428-106D5;0.229973!10795-110I3;0.537371!10805-111A4;0.352207!10052-101G7;0.656403!10189-103D9;0.380636!10589-108D4;0.353956!10425-106D2;0.533959!10427-106D4;0.569984!10702-109G9;0.954451!10432-106D9;0.447307!10496-107C1;0.756175!10718-109I7;0.740214!10011-101C2;0.555783!10053-101G8;0.369671!10686-109F2;0.44473!10084-102B3;0.474573!10012-101C3;0.293759!10085-102B4;0.170972!10482-107A5;0.451599!10419-106C5;0.631836!10080-102A8;0.320342!10760-110E4;0.354997!10709-109H7;0.245256!10710-109H8;0.14276!10703-109H1;0.412558!10719-109I8;0.839768!10642-109A3;0.458159!10177-103C6;0.133558!10164-103B2;0.257573!10173-103C2;0.388114!10166-103B4;0.0856927!10083-102B2;0.0877145!10188-103D8;0.0497639!10552-107I3;0.256083!10553-107I4;0.418025!10013-101C4;0.616412!10536-107G5;0.422682!10618-108G6;0.654048!10423-106C9;0.399757!10785-110H2;0.255302!12238-129G6;0.365555!12239-129G7;0.993112!12240-129G8;0.498376!10416-106C2;0.889019!10801-110I9;0.552503!10766-110F1;0.399169!10824-111C5;0.798793!10825-111C6;0.129998!10826-111C7;0.112886!10454-106G4;0.173073!10409-106B4;0.320078!10638-108I8;0.925465!10636-108I6;0.0887946!10513-107D9;0.961301!10420-106C6;0.740292!10082-102B1;0.804268!10014-101C5;0.412306!10070-101I7;0.209972!10452-106G2;0.431274!10453-106G3;0.718404!10449-106F8;0.843299!10042-101F6;0.885078!10069-101I6;0.269054!10193-103E4;0.462778!10631-108I1;0.214416!10438-106E6;0.572737!10488-107B2;0.274103!10196-103E7;0.386614!10071-101I8;0.10008!10071-101I8;0.444359!10041-101F5;0.296813!10451-106G1;0.416753!10450-106F9;0.577318!10604-108F1;0.484554!10605-108F2;0.245328!10606-108F3;0.144973!10603-108E9;0.516793!10497-107C2;0.533172!10448-106F7;0.383073!10643-109A4;0.803217!10426-106D3;0.909072!10431-106D8;0.839706!10197-103E8;0.64406!10443-106F2;0.448971!10815-111B5;0.305406!10816-111B6;0.170185!10817-111B7;0.273486!10015-101C6;0.167896!10410-106B5;0.334298!10054-101G9;0.331303!10758-110E2;0.925563!10711-109H9;0.468141!10040-101F4;0.326419!10470-106I2;0.185518!10415-106C1;0.0720922!10198-103E9;0.11556!10614-108G2;0.619983!10612-108F9;0.860386!10549-107H9;0.377734!10615-108G3;0.930368!10487-107B1;0.292932!10433-106E1;0.779437!10688-109F4;0.0952042!10444-106F3;0.759076!10444-106F3;0.356532!10485-107A8;0.301577!10413-106B8;0.366942!10175-103C4;0.82845!10161-103A8;0.247807!12131-128D7;0.149077!10624-108H3;0.498125!10712-109I1;0.197505!10205-103F7;0.463761!10206-103F8;0.287677!10207-103F9;0.238758!10050-101G5;0.263593!10051-101G6;0.618332!10016-101C7;0.953773!10046-101G1;0.90787!10778-110G4;0.38955!10633-108I3;0.14376!10818-111B8;0.629512!10819-111B9;0.198305!10820-111C1;0.217443!10484-107A7;0.271969!10808-111A7;0.918386!10169-103B7;0.762742!10153-102I9;0.20072!13425-144D5;0.346281!13433-144E4;0.906531!13437-144E8;0.975681!11904-125F5;0.969825!11905-125F6;0.978532!10039-101F3;0.97787!10791-110H8;0.22555!10017-101C8;0.540875!10045-101F9;0.805758!10509-107D5;0.766103!10839-111E2;0.62856!10692-109F8;0.869676!10079-102A7;0.849126!10078-102A6;0.439499!10721-110A1;0.980045!10569-108B2;0.418386!10570-108B3;0.65961!10571-108B4;0.797865!10647-109A8;0.903229!10752-110D5;0.917677!10782-110G8;0.823574!10726-110A6;0.794924!10018-101C9;0.888708!10086-102B5;0.707466!10182-103D2;0.806435!10165-103B3;0.206616!10499-107C4;0.230535!10408-106B3;0.00889748!10019-101D1;0.138855!10068-101I5;0.566018!10075-102A3;0.478065!10077-102A5;0.654176!10727-110A7;0.616097!10775-110G1;0.781499!10412-106B7;0.879174!12231-129F8;0.307996!12232-129F9;0.336908!12233-129G1;0.372749!12234-129G2;0.447753!10414-106B9;0.575221!10170-103B8;0.422322!10183-103D3;0.210666!10150-102I6;0.28271!10174-103C3;0.23073!10155-103A2;0.263018!10038-101F2;0.160589!10838-111E1;0.196951!10759-110E3;0.469912!10514-107E1;0.938602!10465-106H6;0.722885!10691-109F7;0.776596!10843-111E6;0.654576!10844-111E7;0.816294!11747-123G1;0.450994!11748-123G2;0.948873!11749-123G3;0.539294!11750-123G4;0.878358!11751-123G5;0.411059!11840-124H4;0.225998!11752-123G6;0.903555!11753-123G7;0.746665!11754-123G8;0.557632!11755-123G9;0.843313!11756-123H1;0.898818!11833-124G6;0.818975!11760-123H5;0.767869!11836-124G9;0.834396!11758-123H3;0.467983!11835-124G8;0.789159!11762-123H7;0.367917!11838-124H2;0.632993!11757-123H2;0.620608!11759-123H4;0.735144!11761-123H6;0.835605!11842-124H6;0.935866!11837-124H1;0.868084!10568-108B1;0.269033!13230-141I8;0.223034!13231-141I9;0.288878!10696-109G3;0.410221!10493-107B7;0.233102!10494-107B8;0.342604!10850-111F4;0.353526!10851-111F5;0.865294!10852-111F6;0.419386!10853-111F7;0.781859!10854-111F8;0.896147!10855-111F9;0.884454!10856-111G1;0.163629!10847-111F1;0.621361!10846-111E9;0.953469!10848-111F2;0.412057!10845-111E8;0.320617!10857-111G2;0.373762!10858-111G3;0.633022!10156-103A3;0.0375825!11901-125F2;0.256224!11902-125F3;0.777201!11903-125F4;0.927579!10689-109F5;0.719465!10648-109A9;0.567564!10784-110H1;0.252011!10744-110C6;0.855709!10772-110F7;0.822406!10474-106I6;0.726041!10600-108E6;0.581732!10684-109E9;0.959978!12226-129F3;0.832669!12227-129F4;0.610055!10508-107D4;0.0546255!10539-107G8;0.618242!10607-108F4;0.928287!10555-107I6;0.621062!10774-110F9;0.835403!10637-108I7;0.609172!10663-109C6;0.627298!10728-110A8;0.826554!10729-110A9;0.912188!10430-106D7;0.162461!10730-110B1;0.727881!10813-111B3;0.05822!10812-111B2;0.392232!10037-101F1;0.714727!10172-103C1;0.218005!10163-103B1;0.205968!10076-102A4;0.185102!10073-102A1;0.165375!10036-101E9;0.198954!10195-103E6;0.255076!10277-104E7;0.249681!10434-106E2;0.109091!10550-107I1;0.670906!10545-107H5;0.750996!10544-107H4;0.948839!10704-109H2;0.779843!10510-107D6;0.285428!10558-107I9;0.46266!10020-101D2;0.622376!10732-110B3;0.220563!10049-101G4;0.979437!10698-109G5;0.604562!10437-106E5;0.345206!10417-106C3;0.831122!10035-101E8;0.290165!10171-103B9;0.174452!10157-103A4;0.260306!10034-101E7;0.252867!10072-101I9;0.22341!10199-103F1;0.337278!10200-103F2;0.460952!10697-109G4;0.295788!10723-110A3;0.302891!10179-103C8;0.619335!10160-103A7;0.434663!10180-103C9;0.30446!10162-103A9;0.971722!10021-101D3;0.705497!10840-111E3;0.727107!10706-109H4;0.506083!10033-101E6;0.931219!10032-101E5;0.0663698!10490-107B4;0.214965!10439-106E7;0.141195!10022-101D4;0.732609!10176-103C5;0.341113!10469-106I1;0.380572!10067-101I4;0.145426!10411-106B6;0.346763!10471-106I3;0.701844!10030-101E3;0.599418!10475-106I7;0.692063!10787-110H4;0.451018!10477-106I9;0.143107!10695-109G2;0.983784!11771-123I7;0.686109!11772-123I8;0.49665!11773-123I9;0.444656!10093-102C3;0.852232!10442-106F1;0.632129!10442-106F1;0.366704!10201-103F3;0.294395!10639-108I9;0.168822!11843-124H7;0.144204!11841-124H5;0.807906!10693-109F9;0.504631!10436-106E4;0.688195!10483-107A6;0.372!10282-104F3;0.460772!10023-101D5;0.113849!10066-101I3;0.32797!10065-101I2;0.67593!10800-110I8;0.745386!10610-108F7;0.57143!10841-111E4;0.24856!10541-107H1;0.748467!10842-111E5;0.467237!10562-108A4;0.922886!10024-101D6;0.550344!10064-101I1;0.281925!10609-108F6;0.984671!10048-101G3;0.710014!10781-110G7;0.217724!10181-103D1;0.906449!10159-103A6;0.204296!10056-101H2;0.0900614!10737-110B8;0.30712!10025-101D7;0.117975!10044-101F8;0.323722!10424-106D1;0.512806!10463-106H4;0.627316!10616-108G4;0.444276!10486-107A9;0.853625!10062-101H8;0.880764!10202-103F4;0.316029!10158-103A5;0.451003!10441-106E9;0.179084!10031-101E4;0.465472!10063-101H9;0.319146!10063-101H9;0.328203!11763-123H8;0.55647!11765-123I1;0.466439!11768-123I4;0.899843!10807-111A6;0.915241!10790-110H7;0.840918!10798-110I6;0.605278!10786-110H3;0.274735!10591-108D6;0.952707!10593-108D8;0.86984!10590-108D5;0.436344!10026-101D8;0.337004!10096-102C6;0.644717!10168-103B6;0.321099!10154-103A1;0.224106!10209-103G2;0.253852!10061-101H7;0.980725!10027-101D9;0.7252!10043-101F7;0.846683!10783-110G9;0.42691!10028-101E1;0.874513!10060-101H6;0.449687!10203-103F5;0.213542!10059-101H5;0.810458!10047-101G2;0.696891!10029-101E2;0.896885!10058-101H4;0.854215!10418-106C4;0.675253!10492-107B6;0.276746!10694-109G1;0.507866!10797-110I5;0.939744!10057-101H3;0.103935!10100-102D1;0.811246!10055-101H1;0.49713!10204-103F6;0.595547!10191-103E2;0.40145!10563-108A5;0.428219
|name=GCGGACTGAA,motif633,CNhs10646,T:2326.0(66.55%),B:36407.5(57.07%),P:1e-29
|name=GCGGACTGAA,motif633,CNhs10646,T:2326.0(66.55%),B:36407.5(57.07%),P:1e-29
|tomtom_result=Pax5#MA0014.1;1;0.00353008;1.68032;1;10;GCGGACTGAA;GGAGCACTGAAGCGTAACCG;+!TEA1#MA0405.1;0;0.00601498;2.86313;1;8;GCGGACTGAA;GCGGACAT;+!MIZF#MA0131.1;0;0.0069157;3.29188;1;10;GCGGACTGAA;GCGGACGTTA;-!Mafb#MA0117.1;0;0.0090151;4.29119;1;8;GCGGACTGAA;GCTGACGG;+!HAP1#MA0312.1;-1;0.00938384;4.46671;1;8;GCGGACTGAA;CGGAGATA;+!STB3#MA0390.1;0;0.0105417;5.01783;1;10;GCGGACTGAA;CCAGAGTGAAAAATTTTGGAC;-!YDR520C#MA0422.1;0;0.0112667;5.36295;1;10;GCGGACTGAA;CCGGAGATAA;+!YRR1#MA0439.1;0;0.0122042;5.80918;1;10;GCGGACTGAA;GCGGAGATAAG;-
}}
}}

Latest revision as of 14:39, 7 September 2012

Full Name: GCGGACTGAA,motif633,CNhs10646,T:2326.0(66.55%),B:36407.5(57.07%),P:1e-29

Motif matrix
POACGT
12.326179.1022142.2462.326
22.3262319.0222.3262.326
3120.95281.412079.44444.194
4234.926525.6761563.0722.326
52319.0222.3262.3262.326
660.4761911.972351.2262.326
72.326232.62.3262088.748
82.3262.3262319.0222.326
92070.1479.084174.452.326
102319.0222.3262.3262.326

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax5#MA0014.110.003530081.68032110GCGGACTGAAGGAGCACTGAAGCGTAACCG+
TEA1#MA0405.100.006014982.8631318GCGGACTGAAGCGGACAT+
MIZF#MA0131.100.00691573.29188110GCGGACTGAAGCGGACGTTA-
Mafb#MA0117.100.00901514.2911918GCGGACTGAAGCTGACGG+
HAP1#MA0312.1-10.009383844.4667118GCGGACTGAACGGAGATA+
STB3#MA0390.100.01054175.01783110GCGGACTGAACCAGAGTGAAAAATTTTGGAC-
YDR520C#MA0422.100.01126675.36295110GCGGACTGAACCGGAGATAA+
YRR1#MA0439.100.01220425.80918110GCGGACTGAAGCGGAGATAAG-
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