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MacroAPE 1083:CGTVTCAYCA,motif126: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;602.36;1751.728;120.472;781.44!2;198.616;143.264;2738.296;175.824!3;976.8;113.96;439.56;1725.68!4;1286.12;807.488;1110.296;48.84!5;175.824;1...")
 
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13!10788-110H5;0.641711!10792-110H9;0.267674!10765-110E9;0.692584!10829-111D1;0.649678!10830-111D2;0.967046!10831-111D3;0.792211!10832-111D4;0.731147!10833-111D5;0.932746!10764-110E8;0.690438!10770-110F5;0.691262!10399-106A3;0.47569!10400-106A4;0.288272!10405-106A9;0.320942!10834-111D6;0.27221!10835-111D7;0.865706!10836-111D8;0.808579!10837-111D9;0.181546!10699-109G6;0.347454!10802-111A1;0.985228!10796-110I4;0.377387!10010-101C1;0.996747!10810-111A9;0.885506!10421-106C7;0.650397!10708-109H6;0.896364!12235-129G3;0.98834!12236-129G4;0.145156!12237-129G5;0.936336!10167-103B5;0.260061!10151-102I7;0.883429!10428-106D5;0.917333!10795-110I3;0.772232!10805-111A4;0.764033!10052-101G7;0.627126!10189-103D9;0.508835!10589-108D4;0.564389!10425-106D2;0.4748!10427-106D4;0.788248!10702-109G9;0.953935!10432-106D9;0.929576!10496-107C1;0.855212!10718-109I7;0.28167!10011-101C2;0.825184!10053-101G8;0.723135!10686-109F2;0.133902!10084-102B3;0.581322!10012-101C3;0.851359!10085-102B4;0.955456!10482-107A5;0.746054!10419-106C5;0.9394!10080-102A8;0.878552!10760-110E4;0.936729!10709-109H7;0.817127!10710-109H8;0.919116!10703-109H1;0.993237!10719-109I8;0.719597!10642-109A3;0.905459!10177-103C6;0.93275!10164-103B2;0.992216!10173-103C2;0.901802!10166-103B4;0.751825!10083-102B2;0.752681!10188-103D8;0.960557!10552-107I3;0.885214!10553-107I4;0.615635!10013-101C4;0.323067!10536-107G5;0.912289!10618-108G6;0.0452263!10423-106C9;0.737181!10785-110H2;0.340148!12238-129G6;0.516924!12239-129G7;0.240242!12240-129G8;0.0592556!10416-106C2;0.0711235!10801-110I9;0.789875!10766-110F1;0.960218!10824-111C5;0.758521!10825-111C6;0.925765!10826-111C7;0.987714!10454-106G4;0.988395!10409-106B4;0.97802!10638-108I8;0.719087!10636-108I6;0.858819!10513-107D9;0.521401!10420-106C6;0.360996!10082-102B1;0.41017!10014-101C5;0.255969!10070-101I7;0.793333!10452-106G2;0.7869!10453-106G3;0.74091!10449-106F8;0.913581!10042-101F6;0.97854!10069-101I6;0.870516!10193-103E4;0.982193!10631-108I1;0.848173!10438-106E6;0.501966!10488-107B2;0.237803!10196-103E7;0.5847!10071-101I8;0.894906!10071-101I8;0.727464!10041-101F5;0.649064!10451-106G1;0.703811!10450-106F9;0.359421!10604-108F1;0.737483!10605-108F2;0.283632!10606-108F3;0.555124!10603-108E9;0.339431!10497-107C2;0.831585!10448-106F7;0.72977!10643-109A4;0.616916!10426-106D3;0.835203!10431-106D8;0.98321!10197-103E8;0.960065!10443-106F2;0.76481!10815-111B5;0.511129!10816-111B6;0.583978!10817-111B7;0.502582!10015-101C6;0.536898!10410-106B5;0.842893!10054-101G9;0.480894!10758-110E2;0.998581!10711-109H9;0.789376!10040-101F4;0.687992!10470-106I2;0.961418!10415-106C1;0.207473!10198-103E9;0.839197!10614-108G2;0.796783!10612-108F9;0.109893!10549-107H9;0.561546!10615-108G3;0.462178!10487-107B1;0.365338!10433-106E1;0.0679625!10688-109F4;0.930119!10444-106F3;0.347076!10444-106F3;0.577418!10485-107A8;0.517185!10413-106B8;0.585832!10175-103C4;0.108296!10161-103A8;0.802622!12131-128D7;0.99199!10624-108H3;0.296011!10712-109I1;0.729802!10205-103F7;0.374484!10206-103F8;0.52736!10207-103F9;0.677147!10050-101G5;0.728517!10051-101G6;0.714558!10016-101C7;0.764896!10046-101G1;0.964776!10778-110G4;0.879994!10633-108I3;0.594518!10818-111B8;0.0989565!10819-111B9;0.346242!10820-111C1;0.357989!10484-107A7;0.329478!10808-111A7;0.162089!10169-103B7;0.866709!10153-102I9;0.84295!13425-144D5;0.952194!13433-144E4;0.51683!13437-144E8;0.561316!11904-125F5;0.710183!11905-125F6;0.332731!10039-101F3;0.4726!10791-110H8;0.881739!10017-101C8;0.329606!10045-101F9;0.861683!10509-107D5;0.658391!10839-111E2;0.201604!10692-109F8;0.551589!10079-102A7;0.953315!10078-102A6;0.791848!10721-110A1;0.746442!10569-108B2;0.709301!10570-108B3;0.988878!10571-108B4;0.890717!10647-109A8;0.620451!10752-110D5;0.370663!10782-110G8;0.627717!10726-110A6;0.897355!10018-101C9;0.266529!10086-102B5;0.48815!10182-103D2;0.674636!10165-103B3;0.973079!10499-107C4;0.771281!10408-106B3;0.214695!10019-101D1;0.832425!10068-101I5;0.873273!10075-102A3;0.951409!10077-102A5;0.565228!10727-110A7;0.522485!10775-110G1;0.502585!10412-106B7;0.991385!12231-129F8;0.390635!12232-129F9;0.967711!12233-129G1;0.984757!12234-129G2;0.634104!10414-106B9;0.719777!10170-103B8;0.260163!10183-103D3;0.972574!10150-102I6;0.962523!10174-103C3;0.930606!10155-103A2;0.795586!10038-101F2;0.80945!10838-111E1;0.93076!10759-110E3;0.669481!10514-107E1;0.683603!10465-106H6;0.664038!10691-109F7;0.953233!10843-111E6;0.60622!10844-111E7;0.856988!11747-123G1;0.988011!11748-123G2;0.79625!11749-123G3;0.734392!11750-123G4;0.717324!11751-123G5;0.865753!11840-124H4;0.922368!11752-123G6;0.799223!11753-123G7;0.29389!11754-123G8;0.49662!11755-123G9;0.933283!11756-123H1;0.954476!11833-124G6;0.55008!11760-123H5;0.31879!11836-124G9;0.76565!11758-123H3;0.932798!11835-124G8;0.960806!11762-123H7;0.652394!11838-124H2;0.667864!11757-123H2;0.98307!11759-123H4;0.48239!11761-123H6;0.745116!11842-124H6;0.739204!11837-124H1;0.69369!10568-108B1;0.728343!13230-141I8;0.364767!13231-141I9;0.781374!10696-109G3;0.963801!10493-107B7;0.985926!10494-107B8;0.762911!10850-111F4;0.736338!10851-111F5;0.621437!10852-111F6;0.649806!10853-111F7;0.325958!10854-111F8;0.30009!10855-111F9;0.994388!10856-111G1;0.69098!10847-111F1;0.99551!10846-111E9;0.489272!10848-111F2;0.607728!10845-111E8;0.537345!10857-111G2;0.563374!10858-111G3;0.2737!10156-103A3;0.912079!11901-125F2;0.949166!11902-125F3;0.706009!11903-125F4;0.978416!10689-109F5;0.532292!10648-109A9;0.93939!10784-110H1;0.352528!10744-110C6;0.989899!10772-110F7;0.945224!10474-106I6;0.480043!10600-108E6;0.798121!10684-109E9;0.854109!12226-129F3;0.593892!12227-129F4;0.355075!10508-107D4;0.759748!10539-107G8;0.28456!10607-108F4;0.926734!10555-107I6;0.333853!10774-110F9;0.493564!10637-108I7;0.846439!10663-109C6;0.929776!10728-110A8;0.428452!10729-110A9;0.918966!10430-106D7;0.852325!10730-110B1;0.928325!10813-111B3;0.832024!10812-111B2;0.859803!10037-101F1;0.527656!10172-103C1;0.929108!10163-103B1;0.863546!10076-102A4;0.934047!10073-102A1;0.773344!10036-101E9;0.742775!10195-103E6;0.859587!10277-104E7;0.918994!10434-106E2;0.955351!10550-107I1;0.311034!10545-107H5;0.641219!10544-107H4;0.979052!10704-109H2;0.591003!10510-107D6;0.51248!10558-107I9;0.638871!10020-101D2;0.659713!10732-110B3;0.958455!10049-101G4;0.594678!10698-109G5;0.0115565!10437-106E5;0.355956!10417-106C3;0.838928!10035-101E8;0.867711!10171-103B9;0.997392!10157-103A4;0.88172!10034-101E7;0.983299!10072-101I9;0.975857!10199-103F1;0.883264!10200-103F2;0.420245!10697-109G4;0.576067!10723-110A3;0.0182797!10179-103C8;0.63397!10160-103A7;0.917527!10180-103C9;0.96547!10162-103A9;0.527909!10021-101D3;0.543962!10840-111E3;0.950857!10706-109H4;0.607144!10033-101E6;0.81929!10032-101E5;0.950714!10490-107B4;0.921062!10439-106E7;0.718366!10022-101D4;0.733006!10176-103C5;0.925337!10469-106I1;0.948286!10067-101I4;0.305605!10411-106B6;0.463241!10471-106I3;0.393921!10030-101E3;0.417122!10475-106I7;0.59831!10787-110H4;0.984847!10477-106I9;0.457914!10695-109G2;0.547548!11771-123I7;0.884795!11772-123I8;0.0608675!11773-123I9;0.0751944!10093-102C3;0.0445284!10442-106F1;0.402915!10442-106F1;0.855997!10201-103F3;0.938483!10639-108I9;0.905889!11843-124H7;0.147699!11841-124H5;0.978312!10693-109F9;0.899796!10436-106E4;0.560477!10483-107A6;0.817468!10282-104F3;0.655297!10023-101D5;0.723353!10066-101I3;0.698403!10065-101I2;0.757845!10800-110I8;0.806576!10610-108F7;0.926065!10841-111E4;0.680684!10541-107H1;0.991386!10842-111E5;0.398277!10562-108A4;0.648754!10024-101D6;0.343188!10064-101I1;0.809562!10609-108F6;0.928879!10048-101G3;0.566331!10781-110G7;0.88048!10181-103D1;0.0712677!10159-103A6;0.938953!10056-101H2;0.759855!10737-110B8;0.55172!10025-101D7;0.851209!10044-101F8;0.485117!10424-106D1;0.412819!10463-106H4;0.521176!10616-108G4;0.628386!10486-107A9;0.827372!10062-101H8;0.22104!10202-103F4;0.988237!10158-103A5;0.66061!10441-106E9;0.996221!10031-101E4;0.984911!10063-101H9;0.820047!10063-101H9;0.619538!11763-123H8;0.991147!11765-123I1;0.644249!11768-123I4;0.777839!10807-111A6;0.99197!10790-110H7;0.533311!10798-110I6;0.555303!10786-110H3;0.681744!10591-108D6;0.365058!10593-108D8;0.577398!10590-108D5;0.349012!10026-101D8;0.487842!10096-102C6;0.746371!10168-103B6;0.924131!10154-103A1;0.85392!10209-103G2;0.990945!10061-101H7;0.6405!10027-101D9;0.702187!10043-101F7;0.918875!10783-110G9;0.948706!10028-101E1;0.519657!10060-101H6;0.674335!10203-103F5;0.673455!10059-101H5;0.700128!10047-101G2;0.989779!10029-101E2;0.471578!10058-101H4;0.820278!10418-106C4;0.935349!10492-107B6;0.84511!10694-109G1;0.831034!10797-110I5;0.923668!10057-101H3;0.0254448!10100-102D1;0.816982!10055-101H1;0.755021!10204-103F6;0.768007!10191-103E2;0.998431!10563-108A5;0.38928
|name=CGTVTCAYCA,motif126,CNhs13533,T:3256.0(64.39%),B:43720.8(54.22%),P:1e-48
|name=CGTVTCAYCA,motif126,CNhs13533,T:3256.0(64.39%),B:43720.8(54.22%),P:1e-48
|tomtom_result=Six4#MA0204.1;-1;2.79424e-05;0.0133006;0.0266012;6;CGTATCATCA;GTATCA;-!so#MA0246.1;-1;0.00119299;0.567864;0.567864;6;CGTATCATCA;GTATCA;-!ABF1#MA0265.1;-1;0.003389;1.61316;1;9;CGTATCATCA;ATATCACTTTATACGA;-!STP2#MA0395.1;10;0.00677162;3.22329;1;10;CGTATCATCA;TGATCGGCGCCGCACGACGA;+!Fos#MA0099.1;0;0.0102406;4.87451;1;8;CGTATCATCA;TGACTCAC;-!AP1#MA0099.2;0;0.0148146;7.05174;1;7;CGTATCATCA;TGAGTCA;-!NFE2L2#MA0150.1;3;0.0154477;7.35309;1;8;CGTATCATCA;TGCTGAGTCAT;-!ARG80#MA0271.1;-1;0.0155697;7.41118;1;6;CGTATCATCA;GCGTCT;-!STE12#MA0393.1;0;0.0181036;8.61729;1;7;CGTATCATCA;TGTTTCA;-!ARG81#MA0272.1;0;0.0185067;8.80918;1;8;CGTATCATCA;AGAGTCAC;-!HAC1#MA0310.1;2;0.0197133;9.38353;1;6;CGTATCATCA;CACGTGTC;-
}}
}}

Latest revision as of 14:42, 7 September 2012

Full Name: CGTVTCAYCA,motif126,CNhs13533,T:3256.0(64.39%),B:43720.8(54.22%),P:1e-48

Motif matrix
POACGT
1602.361751.728120.472781.44
2198.616143.2642738.296175.824
3976.8113.96439.561725.68
41286.12807.4881110.29648.84
5175.824136.7521110.2961833.128
6455.842585.26497.68117.216
72292.224166.056107.448690.272
8462.3521282.864214.8961295.888
9172.5681507.528755.392820.512
102165.24169.312107.448814

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Six4#MA0204.1-12.79424e-050.01330060.02660126CGTATCATCAGTATCA-
so#MA0246.1-10.001192990.5678640.5678646CGTATCATCAGTATCA-
ABF1#MA0265.1-10.0033891.6131619CGTATCATCAATATCACTTTATACGA-
STP2#MA0395.1100.006771623.22329110CGTATCATCATGATCGGCGCCGCACGACGA+
Fos#MA0099.100.01024064.8745118CGTATCATCATGACTCAC-
AP1#MA0099.200.01481467.0517417CGTATCATCATGAGTCA-
NFE2L2#MA0150.130.01544777.3530918CGTATCATCATGCTGAGTCAT-
ARG80#MA0271.1-10.01556977.4111816CGTATCATCAGCGTCT-
STE12#MA0393.100.01810368.6172917CGTATCATCATGTTTCA-
ARG81#MA0272.100.01850678.8091818CGTATCATCAAGAGTCAC-
HAC1#MA0310.120.01971339.3835316CGTATCATCACACGTGTC-
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