MacroAPE 1083:NANOG mES-Nanog-ChIP-Seq/Homer: Difference between revisions
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|PWM=PO;A;C;G;T!1;2719;163;3316;583!2;576;1919;3879;407!3;176;5168;108;1329!4;2048;4191;237;305!5;6224;129;75;353!6;7;20;7;6747!7;7;2468;20;4286!8;4991;787;24...") |
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| ||
|name=NANOG_mES-Nanog-ChIP-Seq/Homer | |name=NANOG_mES-Nanog-ChIP-Seq/Homer | ||
|tomtom_result=tup#MA0248.1;-2;9.48507e-06;0.00451489;0.00850286;7;GGCCATTAAC;CAATTAA;-!bsh#MA0214.1;-2;3.1417e-05;0.0149545;0.0140818;7;GGCCATTAAC;CAATTAA;-!NK7.1#MA0196.1;-2;0.000160699;0.0764928;0.0319138;7;GGCCATTAAC;CAATTAA;-!CG11085#MA0171.1;-2;0.000178002;0.0847289;0.0319138;7;GGCCATTAAC;CAATTAA;-!CG13424#MA0175.1;-2;0.000178002;0.0847289;0.0319138;7;GGCCATTAAC;CAATTAA;-!slou#MA0245.1;-2;0.000239539;0.114021;0.0337797;7;GGCCATTAAC;CAATTAA;-!ems#MA0219.1;-2;0.000263773;0.125556;0.0337797;7;GGCCATTAAC;TCATTAA;-!C15#MA0170.1;-2;0.000461146;0.219506;0.0421279;7;GGCCATTAAC;TAATTAA;-!Nobox#MA0125.1;0;0.000575405;0.273893;0.0421279;8;GGCCATTAAC;ACCAATTA;-!unc-4#MA0250.1;-2;0.000602697;0.286884;0.0421279;7;GGCCATTAAC;CAATTAA;-!B-H2#MA0169.1;-2;0.000657921;0.31317;0.0421279;7;GGCCATTAAC;CAATTAA;-!CG15696#MA0176.1;-2;0.000657921;0.31317;0.0421279;7;GGCCATTAAC;CAATTAA;-!Hmx#MA0192.1;-2;0.000657921;0.31317;0.0421279;7;GGCCATTAAC;CAATTAA;-!ftz#MA0225.1;-2;0.000657921;0.31317;0.0421279;7;GGCCATTAAC;TAATTAA;-!Dll#MA0187.1;-1;0.00071717;0.341373;0.0428603;7;GGCCATTAAC;GTAATTA;-!CG34031#MA0444.1;-2;0.00078046;0.371499;0.0437276;7;GGCCATTAAC;CAATTAA;-!Dfd#MA0186.1;-2;0.000920479;0.438148;0.0461553;7;GGCCATTAAC;TCATTAA;-!CG32532#MA0179.1;-2;0.000998053;0.475073;0.0461553;7;GGCCATTAAC;TAATTAA;-!btn#MA0215.1;-2;0.000998053;0.475073;0.0461553;7;GGCCATTAAC;TCATTAA;-!E5#MA0189.1;-2;0.00108123;0.514664;0.0461553;7;GGCCATTAAC;TAATTAA;-!eve#MA0221.1;-2;0.00108123;0.514664;0.0461553;7;GGCCATTAAC;TCATTAG;-!Scr#MA0203.1;-2;0.00117002;0.556929;0.0476755;7;GGCCATTAAC;TCATTAA;-!HGTX#MA0191.1;-2;0.00136315;0.648861;0.0509164;7;GGCCATTAAC;TAATTAA;-!en#MA0220.1;-2;0.00136315;0.648861;0.0509164;7;GGCCATTAAC;TAATTAA;-!Ubx#MA0094.2;-2;0.00144744;0.688979;0.0519019;8;GGCCATTAAC;TAATTAAA;-!B-H1#MA0168.1;-2;0.00158044;0.75229;0.0524734;7;GGCCATTAAC;CAATTAA;-!zen2#MA0257.1;-2;0.00158044;0.75229;0.0524734;7;GGCCATTAAC;TAATTAA;-!Antp#MA0166.1;-2;0.00169919;0.808814;0.0525252;7;GGCCATTAAC;TCATTAA;-!Dr#MA0188.1;-1;0.00169919;0.808814;0.0525252;7;GGCCATTAAC;CCAATTA;+!hbn#MA0226.1;-2;0.00195917;0.932563;0.0585429;7;GGCCATTAAC;TAATTAA;-!unpg#MA0251.1;-2;0.00225306;1.07246;0.0651531;7;GGCCATTAAC;TAATTAA;-!Lim3#MA0195.1;-2;0.00241472;1.1494;0.0676458;7;GGCCATTAAC;TAATTAA;-!Vsx1#MA0181.1;-2;0.00258731;1.23156;0.0695383;7;GGCCATTAAC;TAATTAA;-!Oct#MA0197.1;-2;0.00263741;1.25541;0.0695383;8;GGCCATTAAC;TAATTAAA;-!abd-A#MA0206.1;-2;0.00296931;1.41339;0.0760522;7;GGCCATTAAC;TAATTAA;-!Vsx2#MA0180.1;-1;0.00335439;1.59669;0.0822069;9;GGCCATTAAC;CTAATTAAA;-!otp#MA0236.1;-2;0.00364965;1.73723;0.0822069;7;GGCCATTAAC;TAATTAA;-!pb#MA0238.1;-2;0.00364965;1.73723;0.0822069;7;GGCCATTAAC;TAATTAA;-!YY1#MA0095.1;-1;0.00366812;1.74603;0.0822069;6;GGCCATTAAC;GCCATC;+!YHP1#MA0426.1;-2;0.00366812;1.74603;0.0822069;6;GGCCATTAAC;CAATTA;-!lab#MA0230.1;-2;0.00390917;1.86077;0.0834372;7;GGCCATTAAC;TAATTAA;-!H2.0#MA0448.1;-2;0.00390917;1.86077;0.0834372;7;GGCCATTAAC;TAATTAA;-!Awh#MA0167.1;-2;0.00448454;2.13464;0.0886059;7;GGCCATTAAC;TAATTAA;-!CG18599#MA0177.1;-2;0.00448454;2.13464;0.0886059;7;GGCCATTAAC;TAATTAA;-!Rx#MA0202.1;-2;0.00480176;2.28564;0.0886059;7;GGCCATTAAC;TAATTAG;-!ap#MA0209.1;-2;0.00480176;2.28564;0.0886059;7;GGCCATTAAC;TAATTAG;-!ind#MA0228.1;-2;0.00480176;2.28564;0.0886059;7;GGCCATTAAC;TAATTAG;-!lbl#MA0232.1;-2;0.00497306;2.36718;0.0886059;6;GGCCATTAAC;TAATTA;-!Ubx#MA0094.2;-4;0.00504727;2.4025;0.0886059;4;GGCCATTAAC;ATTA;-!CG42234#MA0174.1;-2;0.00513974;2.44652;0.0886059;7;GGCCATTAAC;TAATAAA;-!zen#MA0256.1;-2;0.00513974;2.44652;0.0886059;7;GGCCATTAAC;TCATTAG;-!PHDP#MA0457.1;-2;0.00513974;2.44652;0.0886059;7;GGCCATTAAC;TAATTAA;-!Nkx2-5#MA0063.1;-2;0.00549985;2.61793;0.0930249;7;GGCCATTAAC;CAATTAA;-!HAP4#MA0315.1;0;0.00575231;2.7381;0.094185;10;GGCCATTAAC;ACCAATCAGAGGCGA;+!OdsH#MA0455.1;-2;0.00588363;2.80061;0.094185;7;GGCCATTAAC;TAATTAG;-!OdsH#MA0455.1;-2;0.00588363;2.80061;0.094185;7;GGCCATTAAC;TAATTAG;-!repo#MA0240.1;-2;0.0062931;2.99552;0.0989725;7;GGCCATTAAC;TAATTAA;-!CG32105#MA0178.1;-2;0.006728;3.20253;0.102225;7;GGCCATTAAC;TAATTAA;-!CG4328#MA0182.1;-2;0.006728;3.20253;0.102225;7;GGCCATTAAC;CAATAAA;-!cad#MA0216.1;-2;0.00718606;3.42056;0.107365;7;GGCCATTAAC;CAATAAA;-!Pdx1#MA0132.1;-3;0.00761691;3.62565;0.110887;6;GGCCATTAAC;AATTAG;-!CG9876#MA0184.1;-2;0.00766916;3.65052;0.110887;7;GGCCATTAAC;TAATTAG;-!HOXA5#MA0158.1;-3;0.0109897;5.23111;0.156338;7;GGCCATTAAC;AATTAGTG;-!Abd-B#MA0165.1;-2;0.0111614;5.31285;0.156338;7;GGCCATTAAC;TCATAAA;-!ARID3A#MA0151.1;-4;0.0113447;5.40006;0.15646;6;GGCCATTAAC;ATTAAA;+!inv#MA0229.1;-2;0.0116203;5.53125;0.157039;8;GGCCATTAAC;TAATTAGA;-!ro#MA0241.1;-2;0.0118535;5.64227;0.157039;7;GGCCATTAAC;TAATTAG;-!HAP5#MA0316.1;0;0.0119122;5.67022;0.157039;10;GGCCATTAAC;ACCAATCAGATCCCA;-!Pph13#MA0200.1;-2;0.0149831;7.13198;0.194661;7;GGCCATTAAC;TAATTAG;-!YOX1#MA0433.1;-1;0.0199051;9.47484;0.254913;8;GGCCATTAAC;TTAATTAA;-!Lim1#MA0194.1;-2;0.0209333;9.96426;0.264304;7;GGCCATTAAC;TAATTAA;- | |||
}} | }} | ||
Latest revision as of 14:53, 7 September 2012
Full Name: NANOG_mES-Nanog-ChIP-Seq/Homer
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
|---|---|---|---|---|---|---|---|---|
| tup#MA0248.1 | -2 | 9.48507e-06 | 0.00451489 | 0.00850286 | 7 | GGCCATTAAC | CAATTAA | - |
| bsh#MA0214.1 | -2 | 3.1417e-05 | 0.0149545 | 0.0140818 | 7 | GGCCATTAAC | CAATTAA | - |
| NK7.1#MA0196.1 | -2 | 0.000160699 | 0.0764928 | 0.0319138 | 7 | GGCCATTAAC | CAATTAA | - |
| CG11085#MA0171.1 | -2 | 0.000178002 | 0.0847289 | 0.0319138 | 7 | GGCCATTAAC | CAATTAA | - |
| CG13424#MA0175.1 | -2 | 0.000178002 | 0.0847289 | 0.0319138 | 7 | GGCCATTAAC | CAATTAA | - |
| slou#MA0245.1 | -2 | 0.000239539 | 0.114021 | 0.0337797 | 7 | GGCCATTAAC | CAATTAA | - |
| ems#MA0219.1 | -2 | 0.000263773 | 0.125556 | 0.0337797 | 7 | GGCCATTAAC | TCATTAA | - |
| C15#MA0170.1 | -2 | 0.000461146 | 0.219506 | 0.0421279 | 7 | GGCCATTAAC | TAATTAA | - |
| Nobox#MA0125.1 | 0 | 0.000575405 | 0.273893 | 0.0421279 | 8 | GGCCATTAAC | ACCAATTA | - |
| unc-4#MA0250.1 | -2 | 0.000602697 | 0.286884 | 0.0421279 | 7 | GGCCATTAAC | CAATTAA | - |
| B-H2#MA0169.1 | -2 | 0.000657921 | 0.31317 | 0.0421279 | 7 | GGCCATTAAC | CAATTAA | - |
| CG15696#MA0176.1 | -2 | 0.000657921 | 0.31317 | 0.0421279 | 7 | GGCCATTAAC | CAATTAA | - |
| Hmx#MA0192.1 | -2 | 0.000657921 | 0.31317 | 0.0421279 | 7 | GGCCATTAAC | CAATTAA | - |
| ftz#MA0225.1 | -2 | 0.000657921 | 0.31317 | 0.0421279 | 7 | GGCCATTAAC | TAATTAA | - |
| Dll#MA0187.1 | -1 | 0.00071717 | 0.341373 | 0.0428603 | 7 | GGCCATTAAC | GTAATTA | - |
| CG34031#MA0444.1 | -2 | 0.00078046 | 0.371499 | 0.0437276 | 7 | GGCCATTAAC | CAATTAA | - |
| Dfd#MA0186.1 | -2 | 0.000920479 | 0.438148 | 0.0461553 | 7 | GGCCATTAAC | TCATTAA | - |
| CG32532#MA0179.1 | -2 | 0.000998053 | 0.475073 | 0.0461553 | 7 | GGCCATTAAC | TAATTAA | - |
| btn#MA0215.1 | -2 | 0.000998053 | 0.475073 | 0.0461553 | 7 | GGCCATTAAC | TCATTAA | - |
| E5#MA0189.1 | -2 | 0.00108123 | 0.514664 | 0.0461553 | 7 | GGCCATTAAC | TAATTAA | - |
| eve#MA0221.1 | -2 | 0.00108123 | 0.514664 | 0.0461553 | 7 | GGCCATTAAC | TCATTAG | - |
| Scr#MA0203.1 | -2 | 0.00117002 | 0.556929 | 0.0476755 | 7 | GGCCATTAAC | TCATTAA | - |
| HGTX#MA0191.1 | -2 | 0.00136315 | 0.648861 | 0.0509164 | 7 | GGCCATTAAC | TAATTAA | - |
| en#MA0220.1 | -2 | 0.00136315 | 0.648861 | 0.0509164 | 7 | GGCCATTAAC | TAATTAA | - |
| Ubx#MA0094.2 | -2 | 0.00144744 | 0.688979 | 0.0519019 | 8 | GGCCATTAAC | TAATTAAA | - |
| B-H1#MA0168.1 | -2 | 0.00158044 | 0.75229 | 0.0524734 | 7 | GGCCATTAAC | CAATTAA | - |
| zen2#MA0257.1 | -2 | 0.00158044 | 0.75229 | 0.0524734 | 7 | GGCCATTAAC | TAATTAA | - |
| Antp#MA0166.1 | -2 | 0.00169919 | 0.808814 | 0.0525252 | 7 | GGCCATTAAC | TCATTAA | - |
| Dr#MA0188.1 | -1 | 0.00169919 | 0.808814 | 0.0525252 | 7 | GGCCATTAAC | CCAATTA | + |
| hbn#MA0226.1 | -2 | 0.00195917 | 0.932563 | 0.0585429 | 7 | GGCCATTAAC | TAATTAA | - |
| unpg#MA0251.1 | -2 | 0.00225306 | 1.07246 | 0.0651531 | 7 | GGCCATTAAC | TAATTAA | - |
| Lim3#MA0195.1 | -2 | 0.00241472 | 1.1494 | 0.0676458 | 7 | GGCCATTAAC | TAATTAA | - |
| Vsx1#MA0181.1 | -2 | 0.00258731 | 1.23156 | 0.0695383 | 7 | GGCCATTAAC | TAATTAA | - |
| Oct#MA0197.1 | -2 | 0.00263741 | 1.25541 | 0.0695383 | 8 | GGCCATTAAC | TAATTAAA | - |
| abd-A#MA0206.1 | -2 | 0.00296931 | 1.41339 | 0.0760522 | 7 | GGCCATTAAC | TAATTAA | - |
| Vsx2#MA0180.1 | -1 | 0.00335439 | 1.59669 | 0.0822069 | 9 | GGCCATTAAC | CTAATTAAA | - |
| otp#MA0236.1 | -2 | 0.00364965 | 1.73723 | 0.0822069 | 7 | GGCCATTAAC | TAATTAA | - |
| pb#MA0238.1 | -2 | 0.00364965 | 1.73723 | 0.0822069 | 7 | GGCCATTAAC | TAATTAA | - |
| YY1#MA0095.1 | -1 | 0.00366812 | 1.74603 | 0.0822069 | 6 | GGCCATTAAC | GCCATC | + |
| YHP1#MA0426.1 | -2 | 0.00366812 | 1.74603 | 0.0822069 | 6 | GGCCATTAAC | CAATTA | - |
| lab#MA0230.1 | -2 | 0.00390917 | 1.86077 | 0.0834372 | 7 | GGCCATTAAC | TAATTAA | - |
| H2.0#MA0448.1 | -2 | 0.00390917 | 1.86077 | 0.0834372 | 7 | GGCCATTAAC | TAATTAA | - |
| Awh#MA0167.1 | -2 | 0.00448454 | 2.13464 | 0.0886059 | 7 | GGCCATTAAC | TAATTAA | - |
| CG18599#MA0177.1 | -2 | 0.00448454 | 2.13464 | 0.0886059 | 7 | GGCCATTAAC | TAATTAA | - |
| Rx#MA0202.1 | -2 | 0.00480176 | 2.28564 | 0.0886059 | 7 | GGCCATTAAC | TAATTAG | - |
| ap#MA0209.1 | -2 | 0.00480176 | 2.28564 | 0.0886059 | 7 | GGCCATTAAC | TAATTAG | - |
| ind#MA0228.1 | -2 | 0.00480176 | 2.28564 | 0.0886059 | 7 | GGCCATTAAC | TAATTAG | - |
| lbl#MA0232.1 | -2 | 0.00497306 | 2.36718 | 0.0886059 | 6 | GGCCATTAAC | TAATTA | - |
| Ubx#MA0094.2 | -4 | 0.00504727 | 2.4025 | 0.0886059 | 4 | GGCCATTAAC | ATTA | - |
| CG42234#MA0174.1 | -2 | 0.00513974 | 2.44652 | 0.0886059 | 7 | GGCCATTAAC | TAATAAA | - |
| zen#MA0256.1 | -2 | 0.00513974 | 2.44652 | 0.0886059 | 7 | GGCCATTAAC | TCATTAG | - |
| PHDP#MA0457.1 | -2 | 0.00513974 | 2.44652 | 0.0886059 | 7 | GGCCATTAAC | TAATTAA | - |
| Nkx2-5#MA0063.1 | -2 | 0.00549985 | 2.61793 | 0.0930249 | 7 | GGCCATTAAC | CAATTAA | - |
| HAP4#MA0315.1 | 0 | 0.00575231 | 2.7381 | 0.094185 | 10 | GGCCATTAAC | ACCAATCAGAGGCGA | + |
| OdsH#MA0455.1 | -2 | 0.00588363 | 2.80061 | 0.094185 | 7 | GGCCATTAAC | TAATTAG | - |
| OdsH#MA0455.1 | -2 | 0.00588363 | 2.80061 | 0.094185 | 7 | GGCCATTAAC | TAATTAG | - |
| repo#MA0240.1 | -2 | 0.0062931 | 2.99552 | 0.0989725 | 7 | GGCCATTAAC | TAATTAA | - |
| CG32105#MA0178.1 | -2 | 0.006728 | 3.20253 | 0.102225 | 7 | GGCCATTAAC | TAATTAA | - |
| CG4328#MA0182.1 | -2 | 0.006728 | 3.20253 | 0.102225 | 7 | GGCCATTAAC | CAATAAA | - |
| cad#MA0216.1 | -2 | 0.00718606 | 3.42056 | 0.107365 | 7 | GGCCATTAAC | CAATAAA | - |
| Pdx1#MA0132.1 | -3 | 0.00761691 | 3.62565 | 0.110887 | 6 | GGCCATTAAC | AATTAG | - |
| CG9876#MA0184.1 | -2 | 0.00766916 | 3.65052 | 0.110887 | 7 | GGCCATTAAC | TAATTAG | - |
| HOXA5#MA0158.1 | -3 | 0.0109897 | 5.23111 | 0.156338 | 7 | GGCCATTAAC | AATTAGTG | - |
| Abd-B#MA0165.1 | -2 | 0.0111614 | 5.31285 | 0.156338 | 7 | GGCCATTAAC | TCATAAA | - |
| ARID3A#MA0151.1 | -4 | 0.0113447 | 5.40006 | 0.15646 | 6 | GGCCATTAAC | ATTAAA | + |
| inv#MA0229.1 | -2 | 0.0116203 | 5.53125 | 0.157039 | 8 | GGCCATTAAC | TAATTAGA | - |
| ro#MA0241.1 | -2 | 0.0118535 | 5.64227 | 0.157039 | 7 | GGCCATTAAC | TAATTAG | - |
| HAP5#MA0316.1 | 0 | 0.0119122 | 5.67022 | 0.157039 | 10 | GGCCATTAAC | ACCAATCAGATCCCA | - |
| Pph13#MA0200.1 | -2 | 0.0149831 | 7.13198 | 0.194661 | 7 | GGCCATTAAC | TAATTAG | - |
| YOX1#MA0433.1 | -1 | 0.0199051 | 9.47484 | 0.254913 | 8 | GGCCATTAAC | TTAATTAA | - |
| Lim1#MA0194.1 | -2 | 0.0209333 | 9.96426 | 0.264304 | 7 | GGCCATTAAC | TAATTAA | - |
