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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0003682;chromatin binding;0.00591370900014409;20670,22589,15201!GO:0000785;chromatin;0.0163874003207195;20670,22589,15201!GO:0000792;heterochromatin;0.0163874003207195;22589,15201!GO:0031508;centric heterochromatin formation;0.0261974345576382;15201!GO:0031055;chromatin remodeling at centromere;0.0261974345576382;15201!GO:0044427;chromosomal part;0.0261974345576382;20670,22589,15201!GO:0005694;chromosome;0.0365932161652959;20670,22589,15201!GO:0043403;skeletal muscle regeneration;0.0479840728769563;20670!GO:0010216;maintenance of DNA methylation;0.0479840728769563;15201!GO:0005721;centric heterochromatin;0.0497174278804884;15201!GO:0006346;methylation-dependent chromatin silencing;0.0497174278804884;15201!GO:0004386;helicase activity;0.0497174278804884;22589,15201!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0120047796549953,0.0114766379188398,0.0159276159806855,0.000987681766957021,0.0033718531251697,0.0138810383015765,0.00845570672241536,0.00719463426217405,0.0209394120336682,0.0177530076361565,0.00377510974650583,0.00888323649869709,-0.0020136722985113,-0.00311730400141737,-0.00759631938372312,0.00318118423613094,-0.0108772681659274,0.00153163515775216,-0.00167461443287438,-0.0087984747355093,0.0221109433883359,0.013066840186241,0.0140976588292924,0.0133970174100512,0.0104474683120992,0.0132204603354115,0.011779834288835,0.01821279616487,-0.00167797645219229,0.00694081163800651,0.0224295937340957,0.00428447615570822,0.00894743562036298,-0.0285338362063746,-0.00243014887732551,-8.46411070259215e-05,0.00401196365751556,0.00519744313886316,-0.00976323721584499,-0.0038464858397784,0.00778347755343208,-0.00259458217672165,-0.00117787148629897,0.00355077511871249,0.016384420021647,0.0239185822981419,-0.00189053995569379,0.00593623869266383,0.0224537599873773,0.0279885067018117,0.00500410390844341,-0.00666977327053163,-0.00445064768054333,0.0097022615564807,0.00603357864248534,0.0139317429552306,-0.00360211384007071,0.0120615623557771,0.00784214184307024,0.00666270595046539,0.00406943022153207,0.00986600226028238,-0.0126247913352994,-0.000228533471541706,-0.00393232583812689,-0.00631743510707777,0.00912520770759196,0.00322249506429937,0.0118486320717636,0.0125754001897273,0.0101671678111351,0.0086119555395799,0.00664190070376995,0.00117284738965187,0.00393916565234989,-0.0109568410890573,-0.0124108922796159,0.00358813065213797,-0.00335430880719833,0.0127864629014256,0.0120964635283017,0.00915266431625471,0.00596818624597468,0.0040052173295163,0.00425210559038765,0.0195988608409571,0.0144241500270273,0.0184094347001654,0.0140606109916779,0.0083340297069734,0.0256073178392653,0.0134354890035942,0.0229082209097856,0.00574550863050777,-0.00172190429280745,0.0152660387773742,0.00722418740785895,0.00836621009456897,0.00441674872767396,-0.00484145178272217,0.00467710834283835,-0.00612406892609658,-0.00497093028558833,-0.0285338362063746,0.0248019311197186,0.0292153579411647,0.0235245289963551,0.0176587918100349,0.00896123995141214,0.0241431402335165,0.0180200671083721,0.0187510474485552,0.0245400340780766,0.0262464884903607,0.0343310302690982,0.0192883951830078,0.0624732898934843,0.00245890152036957,-0.00758458239395748,0.0136127735353638,0.001870794505029,0.000321666154207056,-0.0113978166974283,0.0154920132558035,0.0116562690110251,0.00512268346756063,0.00532324731650626,0.000733590781110878,0.00674030859367429,0.00730376198172476,0.00784743710110365,0.0102958310475732,-0.00428230309270415,-0.000201942265252696,0.00716560620920319,0.0117759027317898,0.00652711512536764,0.0157288030694362,0.0255293664081453,0.00463660930676744,0.0173187798321947,0.000970536979428301,0.0170244918720609,0.0099716858497612,0.0307618539676932,0.0274193821024719,0.0140895569950404,0.0206376205590001,0.0179730390423505,0.0145918535905008,0.0101500415298617,0.00544665755992394,0.00298434873787955,0.00701036794724867,0.0164515553252044,0.0240873053378922,-0.00381360302926703,-0.00083418485078674,-0.00199711293463661,0.0132462338265389,0.0127892995754773,0.0141544951060586,0.0159108805493728,0.0124688890495025,0.00694783341972238,0.0178895258108712,0.00205030921914483,0.0189670696120095,0.0161829002570132,0.0166896427599052,0.0157790000893379,0.0110609491984452,0.0170163747728049,0.0214630951311688,0.00863600897550445,0.0214545921584882,0.0107198302364069,0.00939448174895363,0.007196293768446,0.0110070842935584,0.00564391244996378,0.0199545762574689,0.0105572653028689,0.0109267083922394,0.0131797413315443,0.0180470851419498,0.0125089570768631,0.0102232493215898,0.012813684381321,0.0156878652396022,-0.00714535095497669,0.011024900362626,0.00724610000509323,0.0163031520155838,0.0139671218361912,0.0205932110513235,0.0264299112070174,0.0238575266540423,0.0202640350812439,0.0178567632998521,0.0182168260893052,0.0203475654477669,0.0209955313962779,0.0161826013962506,0.00662247010406395,0.00989162914787466,0.00716139128407818,0.00168433343776247,0.00695050696988649,0.000560357137384345,0.0155049026239119,0.0117287984310356,0.0373438002799392,0.0228786909725263,0.0178519993469682,0.00877012563098304,0.0107267873938758,0.0172074239783829,0.0125285045431078,0.00599533104877756,0.00828850950713695,0.0151659057779859,0.0168037070720646,0.0150609602912473,0.00732328023146365,0.0234100740292694,0.0187314465851948,0.0185344654393794,0.0151703265269287,0.00559908456463714,0.0158932139781874,0.0202701832087542,0.0106090393754422,0.000478532498504245,0.0204270371583057,0.0188630749768697,-0.00233207565496938,0.0064194352649847,0.000216958657838472,-0.00638369443029251,0.0101313676915578,0.0093449935840608,0.00249658109261387,0.0086825790564375,-0.0105439105534278,0.00563516186509757,0.0107578461197725,0.0148357055133643,0.00679763313621316,0.0130683891269318,0.0135578547557727,0.00621918761986976,0.00570347817335936,0.008863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|gostat_on_MCL_coexpression=GO:0003682;chromatin binding;0.00591370900014409;20670,22589,15201!GO:0000785;chromatin;0.0163874003207195;20670,22589,15201!GO:0000792;heterochromatin;0.0163874003207195;22589,15201!GO:0031508;centric heterochromatin formation;0.0261974345576382;15201!GO:0031055;chromatin remodeling at centromere;0.0261974345576382;15201!GO:0044427;chromosomal part;0.0261974345576382;20670,22589,15201!GO:0005694;chromosome;0.0365932161652959;20670,22589,15201!GO:0043403;skeletal muscle regeneration;0.0479840728769563;20670!GO:0010216;maintenance of DNA methylation;0.0479840728769563;15201!GO:0005721;centric heterochromatin;0.0497174278804884;15201!GO:0006346;methylation-dependent chromatin silencing;0.0497174278804884;15201!GO:0004386;helicase activity;0.0497174278804884;22589,15201!
}}

Revision as of 11:03, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:114739327..114739352,+p@chr11:114739327..114739352
+
Mm9::chr11:57645188..57645191,+p@chr11:57645188..57645191
+
Mm9::chr11:62325189..62325193,+p@chr11:62325189..62325193
+
Mm9::chr11:69469061..69469069,+p@chr11:69469061..69469069
+
Mm9::chr11:84714631..84714648,+p@chr11:84714631..84714648
+
Mm9::chr12:119478036..119478039,+p@chr12:119478036..119478039
+
Mm9::chr12:13000013..13000020,+p@chr12:13000013..13000020
+
Mm9::chr12:13000114..13000147,+p@chr12:13000114..13000147
+
Mm9::chr12:19960090..19960092,+p@chr12:19960090..19960092
+
Mm9::chr13:120217189..120217192,+p11@Paip1
Mm9::chr13:120217203..120217220,+p6@Paip1
Mm9::chr13:120217223..120217253,+p3@Paip1
Mm9::chr13:120217256..120217292,+p4@Paip1
Mm9::chr13:120218522..120218537,+p@chr13:120218522..120218537
+
Mm9::chr13:98252702..98252714,+p@chr13:98252702..98252714
+
Mm9::chr14:118623119..118623169,-p@chr14:118623119..118623169
-
Mm9::chr14:22300650..22300661,+p@chr14:22300650..22300661
+
Mm9::chr14:55557445..55557452,+p16@Cmtm5
Mm9::chr14:55557459..55557474,+p6@Cmtm5
Mm9::chr14:70591371..70591391,-p@chr14:70591371..70591391
-
Mm9::chr14:76879103..76879114,+p@chr14:76879103..76879114
+
Mm9::chr15:73098797..73098800,-p@chr15:73098797..73098800
-
Mm9::chr15:9399200..9399211,-p@chr15:9399200..9399211
-
Mm9::chr16:17253208..17253227,+p@chr16:17253208..17253227
+
Mm9::chr17:6988793..6988807,-p@chr17:6988793..6988807
-
Mm9::chr17:6989789..6989810,-p@chr17:6989789..6989810
-
Mm9::chr18:35047173..35047178,+p@chr18:35047173..35047178
+
Mm9::chr19:39005498..39005519,+p5@Hells
Mm9::chr1:163718620..163718627,-p5@Fasl
Mm9::chr1:163718631..163718637,-p4@Fasl
Mm9::chr2:10361502..10361506,+p@chr2:10361502..10361506
+
Mm9::chr2:122084320..122084337,+p@chr2:122084320..122084337
+
Mm9::chr2:165726392..165726402,-p@chr2:165726392..165726402
-
Mm9::chr2:172371713..172371724,+p@chr2:172371713..172371724
+
Mm9::chr2:172371729..172371732,+p@chr2:172371729..172371732
+
Mm9::chr3:145420223..145420231,+p@chr3:145420223..145420231
+
Mm9::chr3:41364609..41364613,+p@chr3:41364609..41364613
+
Mm9::chr3:51025111..51025122,+p@chr3:51025111..51025122
+
Mm9::chr3:51025125..51025133,+p@chr3:51025125..51025133
+
Mm9::chr3:51025153..51025167,+p@chr3:51025153..51025167
+
Mm9::chr4:104608878..104608883,+p@chr4:104608878..104608883
+
Mm9::chr4:104608897..104608911,+p@chr4:104608897..104608911
+
Mm9::chr4:149611832..149611846,+p3@LOC100045967
p3@LOC100503183
p4@Eno1
p4@Gm5506
Mm9::chr4:19225404..19225405,+p1@ENSMUST00000118921
Mm9::chr4:34328331..34328332,-p1@ENSMUST00000121657
Mm9::chr4:57302931..57302943,-p@chr4:57302931..57302943
-
Mm9::chr4:58657475..58657480,+p@chr4:58657475..58657480
+
Mm9::chr5:116474238..116474288,-p4@Prkab1
Mm9::chr5:33770454..33770461,+p@chr5:33770454..33770461
+
Mm9::chr5:34325739..34325749,+p6@Gm1673
Mm9::chr5:34326390..34326399,+p5@Gm1673
Mm9::chr5:66542427..66542436,-p12@Rbm47
Mm9::chr5:66542544..66542547,-p26@Rbm47
Mm9::chr5:66542571..66542582,-p13@Rbm47
Mm9::chr5:66542601..66542614,-p10@Rbm47
Mm9::chr5:67389856..67389879,+p@chr5:67389856..67389879
+
Mm9::chr6:124704032..124704035,-p@chr6:124704032..124704035
-
Mm9::chr6:124707257..124707284,-p@chr6:124707257..124707284
-
Mm9::chr7:3155374..3155377,-p@chr7:3155374..3155377
-
Mm9::chr7:3155548..3155553,-p@chr7:3155548..3155553
-
Mm9::chr7:89919526..89919566,+p@chr7:89919526..89919566
+
Mm9::chr8:109128151..109128162,+p5@Cdh1
Mm9::chr8:122090417..122090425,-p@chr8:122090417..122090425
-
Mm9::chr8:125978140..125978186,+p@chr8:125978140..125978186
+
Mm9::chr8:26201813..26201823,-p11@Plekha2
Mm9::chr8:26201836..26201844,-p12@Plekha2
Mm9::chr8:28582047..28582054,+p@chr8:28582047..28582054
+
Mm9::chr8:82163391..82163418,+p5@Otud4
Mm9::chr9:110751971..110751974,+p5@Prss46
Mm9::chr9:118387565..118387569,+p6@Eomes
Mm9::chr9:118387742..118387753,+p3@Eomes
Mm9::chrX:103123886..103123922,-p3@Atrx
Mm9::chrX:135868446..135868457,+p2@Trap1a
Mm9::chrX:135868692..135868701,+p@chrX:135868692..135868701
+
Mm9::chrX:135870030..135870033,+p@chrX:135870030..135870033
+
Mm9::chrX:135870382..135870395,+p@chrX:135870382..135870395
+
Mm9::chrX:135870429..135870440,+p@chrX:135870429..135870440
+
Mm9::chrX:135870446..135870470,+p@chrX:135870446..135870470
+
Mm9::chrX:34232525..34232558,-p@chrX:34232525..34232558
-
Mm9::chrX:7400016..7400027,+p@chrX:7400016..7400027
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003682chromatin binding0.00591370900014409
GO:0000785chromatin0.0163874003207195
GO:0000792heterochromatin0.0163874003207195
GO:0031508centric heterochromatin formation0.0261974345576382
GO:0031055chromatin remodeling at centromere0.0261974345576382
GO:0044427chromosomal part0.0261974345576382
GO:0005694chromosome0.0365932161652959
GO:0043403skeletal muscle regeneration0.0479840728769563
GO:0010216maintenance of DNA methylation0.0479840728769563
GO:0005721centric heterochromatin0.0497174278804884
GO:0006346methylation-dependent chromatin silencing0.0497174278804884
GO:0004386helicase activity0.0497174278804884



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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