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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0004587;ornithine-oxo-acid transaminase activity;0.00723129172825533;18242!GO:0042802;identical protein binding;0.00723129172825533;18826,12738!GO:0001891;phagocytic cup;0.00723129172825533;18826!GO:0016338;calcium-independent cell-cell adhesion;0.0162668407931358;12738!GO:0051017;actin filament bundle formation;0.0281850439083559;18826!GO:0005884;actin filament;0.0365582924213738;18826!GO:0051015;actin filament binding;0.0365582924213738;18826!GO:0008483;transaminase activity;0.0365582924213738;18242!GO:0001726;ruffle;0.0378956802185215;18826!GO:0016769;transferase activity, transferring nitrogenous groups;0.0378956802185215;18242!GO:0007015;actin filament organization;0.0393613436801453;18826!GO:0030170;pyridoxal phosphate binding;0.0414797678200668;18242!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004587;ornithine-oxo-acid transaminase activity;0.00723129172825533;18242!GO:0042802;identical protein binding;0.00723129172825533;18826,12738!GO:0001891;phagocytic cup;0.00723129172825533;18826!GO:0016338;calcium-independent cell-cell adhesion;0.0162668407931358;12738!GO:0051017;actin filament bundle formation;0.0281850439083559;18826!GO:0005884;actin filament;0.0365582924213738;18826!GO:0051015;actin filament binding;0.0365582924213738;18826!GO:0008483;transaminase activity;0.0365582924213738;18242!GO:0001726;ruffle;0.0378956802185215;18826!GO:0016769;transferase activity, transferring nitrogenous groups;0.0378956802185215;18242!GO:0007015;actin filament organization;0.0393613436801453;18826!GO:0030170;pyridoxal phosphate binding;0.0414797678200668;18242!
}}

Revision as of 11:26, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:75597728..75597749,+p12@Lcp1
Mm9::chr1:67158430..67158479,+p@chr1:67158430..67158479
+
Mm9::chr7:139768020..139768038,-p1@Oat
Mm9::chr7:139802368..139802383,+p2@Lhpp
Mm9::chrX:136342810..136342829,+p@chrX:136342810..136342829
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004587ornithine-oxo-acid transaminase activity0.00723129172825533
GO:0042802identical protein binding0.00723129172825533
GO:0001891phagocytic cup0.00723129172825533
GO:0016338calcium-independent cell-cell adhesion0.0162668407931358
GO:0051017actin filament bundle formation0.0281850439083559
GO:0005884actin filament0.0365582924213738
GO:0051015actin filament binding0.0365582924213738
GO:0008483transaminase activity0.0365582924213738
GO:0001726ruffle0.0378956802185215
GO:0016769transferase activity, transferring nitrogenous groups0.0378956802185215
GO:0007015actin filament organization0.0393613436801453
GO:0030170pyridoxal phosphate binding0.0414797678200668



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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