Personal tools

MCL coexpression mm9:608: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.150185588947388,-0.0684654944421168,-0.0494171415995565,-0.0423081883046501,-0.0754369563361844,0.143645032026257,0.154022763988534,-0.037036729265306,-0.0691988971511813,-0.0388688140304516,-0.0712522598160442,-0.0534561971417464,-0.0588387606579324,-0.048201251421754,-0.0797273407895629,-0.0778277470094667,-0.0901328331724756,-0.0802096363684505,-0.0688928243568343,-0.0901328331724756,0.390719321187656,-0.0901328331724756,-0.0901328331724756,0.071907826949374,0.0699013998903364,-0.0737104393128316,0.0130839604155104,0.0222401250565792,0.0803659122573005,0.0480306053111255,0.0365775388823162,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0644471465937447,-0.0515422292891475,-0.0512871456648792,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0712915120798412,-0.0758098595976897,0.186948994032465,0.180831669925082,0.000111039175103116,-0.0178905489614448,-0.0060827649527201,0.0620599832468164,0.079968325698158,-0.00286956435688746,-0.0256413009509192,-0.0697643770188171,-0.0576916286567724,-0.0901328331724756,-0.026312190643494,-0.0318276130964554,-0.000737851194874442,0.249327549284344,0.344140007103591,0.170071383812358,-0.0150180353823855,-0.0901328331724756,-0.0766867511754334,-0.0901328331724756,-0.0707063306980075,0.0313911810861241,0.114326086200009,0.0581215198576964,0.0243037173024345,0.0107090623091912,0.432190224551332,0.413912320795829,0.105793656176609,0.118402254915311,0.0844873230303849,0.708606883023986,0.846469109595158,0.86601110020844,0.280392391573231,0.33367980857151,0.362755750035392,0.750101136749255,0.880134510383059,0.915935365874699,0.60037121714621,0.630091594883248,0.338217434997058,0.202517892368602,0.327315663443704,0.0485381659805401,-0.0451975157256466,-0.0901328331724756,-0.0588933315024713,-0.0599958838021028,-0.0767347810094628,0.237706727804491,-0.046811699068772,-0.0749893927414261,-0.0682317028904956,0.220404730536724,-0.0142326579278258,-0.012072611856848,0.022277803532964,-0.0759480140280192,-0.0819598511887771,-0.0901328331724756,0.151144648665852,-0.0231543108218397,0.869543064480319,0.267042111070601,0.392767245649364,0.425737085994871,0.517908001770579,0.60158535711134,0.577375855232579,-0.0412670193990254,0.0209437007190391,-0.0532696971176563,-0.0174941935465359,-0.0185552362046644,-0.0265757635977176,0.142391346243777,0.623703329166659,0.569259179610193,0.135720127314185,-0.0782629586654786,-0.0731250348614052,-0.0858035850458814,0.956984359575686,0.887086041113455,0.417882722118321,0.666454034084265,0.641238820147555,0.873785842596394,0.809762459586927,0.0116996669146274,-0.00163238920696304,-0.0212968101450812,0.429046179942853,0.110214642954737,0.0142173958130232,0.0732929896028486,0.14417927445526,0.240253172779176,0.282849998481138,0.283799183745886,0.550064875726313,-0.0338200019002753,0.0730909889738206,0.0681466127317572,-0.00700026642152195,0.0584351054981794,-0.000429759344814516,0.0340403512428788,0.0233000465636509,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0508913825964508,0.0143042206928627,-0.02861553651888,-0.0393839553687822,-0.0420504846039857,-0.0295375863799603,-0.0274935148322673,-0.0421415612503982,-0.0311980297789955,-0.035155619503562,-0.029608987734698,-0.0519243895144918,-0.0286718082202324,-0.0673210046020077,-0.0484110262737617,0.693569435565854,0.306005126433404,0.103683810127969,0.110659956561053,0.0270490539208219,0.070507950419555,0.0793846117509708,0.167150647581669,0.129922623153326,0.168169666661929,0.190914433867255,0.174242816297881,0.203856544624804,0.223618601801668,0.220200231935079,0.147218185974214,0.153089042275145,0.155179666472804,-0.0126361899975449,0.135698959772307,0.0179640690684747,0.06643002708386,0.0551161340659804,0.0943470585736729,0.0346922530265688,0.0357031555065306,0.0133711272599972,0.0601655680964877,-0.0618317907129647,-0.0465215095624178,-0.0483690815744641,-0.0681110328750796,-0.0606043613526037,-0.0758868312374077,-0.0290983106029265,-0.0553815417124501,-0.0686461017317583,-0.0584518576171022,-0.0578847446632767,-0.0515494027443511,-0.0627534599193381,-0.0337989322420227,-0.0235327577930058,-0.0457131065414461,0.112950718939567,-0.00292380610139471,-0.0063467609765616,-0.00154737154288181,0.0157101142181787,0.00221263024672133,0.0584598726490202,0.0676227738922642,0.0126932097851133,0.00505305441348434,-0.00164732878678818,0.031654919290736,0.042645189583965,0.061592860795008,-0.0901328331724756,-0.0744144360019574,-0.0756578163547448,-0.0506670501780916,0.881656488999146,0.835564302512331,-0.062470983543336,-0.0500752789491315,0.137614478520203,0.143821058388709,0.265908260111571,0.17355724257325,0.221079099861524,0.216024763443499,0.150915050308469,0.300631887323667,0.316379983699086,0.840087836264558,0.0935990847398044,0.0166274512073503,0.0136531592357207,0.133043373650686,0.329947868231492,0.109682793816273,0.164792393591355,0.265822972701514,0.281584474983153,0.338928521060439,0.351428540471522,0.400165163288676,0.392493052055858,0.354885760716265,0.248506737227764,0.213009615621649,1.43673244254079,0.346387831122765,0.394738227807517,0.598689171230061,0.751085306478888,0.857084482014325,0.882565637612173,0.78964224383942,0.0193417627246167,-0.0387552830983027,0.10545685940539,0.00210441425657115,-0.010573245285128,-0.00121587665822125,-0.0148734320430837,-0.0219068762032468,0.212460972054843,0.886070699607521,-0.0730055818315405,0.0112399678611331,-0.0178439416439349,-0.0455579273903668,-0.0597101869488482,-0.0488971642761862,0.0109339452087371,0.0160777467675862,-0.0103259505518778,0.0545987524613738,-0.00267515381554126,0.0695995223497079,0.0557802660093853,0.103684418397363,0.0828994397178646,0.150252699338826,0.164881446465977,0.136692260915901,0.124056638439845,-0.0434127533951591,-0.0304537313537485,-0.0283566224480937,-0.0102965827666023,-0.00074597807662111,0.0114741682626497,0.00729137156074091,0.0117243095691426,-0.0114970391491801,-0.0103550920757081,-0.029164713253531,-0.00448435409203339,-0.0406824936951993,0.0498242479770462,0.0324437758692574,-0.0224872663773945,0.00579015661462979,-0.0396800582696718,-0.0378180104329942,-0.0476396591702189,-0.037202309093648,-0.0545810154760231,-0.066057755318059,-0.066738188238594,-0.0740698602145985,-0.0632530117390879,-0.0147605324824628,-0.0503983902724049,-0.0705024816371212,-0.0610621822551042,0.13919630794001,0.037101361615982,0.00554369952606903,-0.0325765930974211,-0.0104673750092354,0.666458012935588,0.644892925107141,0.569982442501083,0.535851390917073,0.616232018312266,0.652947899601044,0.59805926196688,0.664078734749049,0.721660538917014,0.702497340437823,0.00935391522236571,0.107554088357415,0.124095885848244,0.126694996876463,0.0994866657861021,0.136188094918142,0.225595802528821,0.245957896015281,0.296873352317229,0.244809818357822,0.256563152790485,0.18312909114765,0.233695056434266,0.212173334806721,0.202421824380448,0.226688833747038,0.170129653088936,0.21341014444364,0.202747324498313,0.215176460507977,0.237256177179413,0.194760036761341,0.223110635029364,0.193074754302434,0.227641792882492,0.200817258964249,0.224945695627527,0.200196440973617,0.225610192750958,0.256037680181856,0.18236190875484,0.193215003238456,0.225908880981401,0.208706010553967,0.112851695560489,0.234643384927172,0.182836326122597,0.198658027989675,0.148884728247323,0.152127558022628,0.0750628156119633
|coexpression_dpi_cluster_scores_mean=0.150185588947388,-0.0684654944421168,-0.0494171415995565,-0.0423081883046501,-0.0754369563361844,0.143645032026257,0.154022763988534,-0.037036729265306,-0.0691988971511813,-0.0388688140304516,-0.0712522598160442,-0.0534561971417464,-0.0588387606579324,-0.048201251421754,-0.0797273407895629,-0.0778277470094667,-0.0901328331724756,-0.0802096363684505,-0.0688928243568343,-0.0901328331724756,0.390719321187656,-0.0901328331724756,-0.0901328331724756,0.071907826949374,0.0699013998903364,-0.0737104393128316,0.0130839604155104,0.0222401250565792,0.0803659122573005,0.0480306053111255,0.0365775388823162,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0644471465937447,-0.0515422292891475,-0.0512871456648792,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0712915120798412,-0.0758098595976897,0.186948994032465,0.180831669925082,0.000111039175103116,-0.0178905489614448,-0.0060827649527201,0.0620599832468164,0.079968325698158,-0.00286956435688746,-0.0256413009509192,-0.0697643770188171,-0.0576916286567724,-0.0901328331724756,-0.026312190643494,-0.0318276130964554,-0.000737851194874442,0.249327549284344,0.344140007103591,0.170071383812358,-0.0150180353823855,-0.0901328331724756,-0.0766867511754334,-0.0901328331724756,-0.0707063306980075,0.0313911810861241,0.114326086200009,0.0581215198576964,0.0243037173024345,0.0107090623091912,0.432190224551332,0.413912320795829,0.105793656176609,0.118402254915311,0.0844873230303849,0.708606883023986,0.846469109595158,0.86601110020844,0.280392391573231,0.33367980857151,0.362755750035392,0.750101136749255,0.880134510383059,0.915935365874699,0.60037121714621,0.630091594883248,0.338217434997058,0.202517892368602,0.327315663443704,0.0485381659805401,-0.0451975157256466,-0.0901328331724756,-0.0588933315024713,-0.0599958838021028,-0.0767347810094628,0.237706727804491,-0.046811699068772,-0.0749893927414261,-0.0682317028904956,0.220404730536724,-0.0142326579278258,-0.012072611856848,0.022277803532964,-0.0759480140280192,-0.0819598511887771,-0.0901328331724756,0.151144648665852,-0.0231543108218397,0.869543064480319,0.267042111070601,0.392767245649364,0.425737085994871,0.517908001770579,0.60158535711134,0.577375855232579,-0.0412670193990254,0.0209437007190391,-0.0532696971176563,-0.0174941935465359,-0.0185552362046644,-0.0265757635977176,0.142391346243777,0.623703329166659,0.569259179610193,0.135720127314185,-0.0782629586654786,-0.0731250348614052,-0.0858035850458814,0.956984359575686,0.887086041113455,0.417882722118321,0.666454034084265,0.641238820147555,0.873785842596394,0.809762459586927,0.0116996669146274,-0.00163238920696304,-0.0212968101450812,0.429046179942853,0.110214642954737,0.0142173958130232,0.0732929896028486,0.14417927445526,0.240253172779176,0.282849998481138,0.283799183745886,0.550064875726313,-0.0338200019002753,0.0730909889738206,0.0681466127317572,-0.00700026642152195,0.0584351054981794,-0.000429759344814516,0.0340403512428788,0.0233000465636509,-0.0901328331724756,-0.0901328331724756,-0.0901328331724756,-0.0508913825964508,0.0143042206928627,-0.02861553651888,-0.0393839553687822,-0.0420504846039857,-0.0295375863799603,-0.0274935148322673,-0.0421415612503982,-0.0311980297789955,-0.035155619503562,-0.029608987734698,-0.0519243895144918,-0.0286718082202324,-0.0673210046020077,-0.0484110262737617,0.693569435565854,0.306005126433404,0.103683810127969,0.110659956561053,0.0270490539208219,0.070507950419555,0.0793846117509708,0.167150647581669,0.129922623153326,0.168169666661929,0.190914433867255,0.174242816297881,0.203856544624804,0.223618601801668,0.220200231935079,0.147218185974214,0.153089042275145,0.155179666472804,-0.0126361899975449,0.135698959772307,0.0179640690684747,0.06643002708386,0.0551161340659804,0.0943470585736729,0.0346922530265688,0.0357031555065306,0.0133711272599972,0.0601655680964877,-0.0618317907129647,-0.0465215095624178,-0.0483690815744641,-0.0681110328750796,-0.0606043613526037,-0.0758868312374077,-0.0290983106029265,-0.0553815417124501,-0.0686461017317583,-0.0584518576171022,-0.0578847446632767,-0.0515494027443511,-0.0627534599193381,-0.0337989322420227,-0.0235327577930058,-0.0457131065414461,0.112950718939567,-0.00292380610139471,-0.0063467609765616,-0.00154737154288181,0.0157101142181787,0.00221263024672133,0.0584598726490202,0.0676227738922642,0.0126932097851133,0.00505305441348434,-0.00164732878678818,0.031654919290736,0.042645189583965,0.061592860795008,-0.0901328331724756,-0.0744144360019574,-0.0756578163547448,-0.0506670501780916,0.881656488999146,0.835564302512331,-0.062470983543336,-0.0500752789491315,0.137614478520203,0.143821058388709,0.265908260111571,0.17355724257325,0.221079099861524,0.216024763443499,0.150915050308469,0.300631887323667,0.316379983699086,0.840087836264558,0.0935990847398044,0.0166274512073503,0.0136531592357207,0.133043373650686,0.329947868231492,0.109682793816273,0.164792393591355,0.265822972701514,0.281584474983153,0.338928521060439,0.351428540471522,0.400165163288676,0.392493052055858,0.354885760716265,0.248506737227764,0.213009615621649,1.43673244254079,0.346387831122765,0.394738227807517,0.598689171230061,0.751085306478888,0.857084482014325,0.882565637612173,0.78964224383942,0.0193417627246167,-0.0387552830983027,0.10545685940539,0.00210441425657115,-0.010573245285128,-0.00121587665822125,-0.0148734320430837,-0.0219068762032468,0.212460972054843,0.886070699607521,-0.0730055818315405,0.0112399678611331,-0.0178439416439349,-0.0455579273903668,-0.0597101869488482,-0.0488971642761862,0.0109339452087371,0.0160777467675862,-0.0103259505518778,0.0545987524613738,-0.00267515381554126,0.0695995223497079,0.0557802660093853,0.103684418397363,0.0828994397178646,0.150252699338826,0.164881446465977,0.136692260915901,0.124056638439845,-0.0434127533951591,-0.0304537313537485,-0.0283566224480937,-0.0102965827666023,-0.00074597807662111,0.0114741682626497,0.00729137156074091,0.0117243095691426,-0.0114970391491801,-0.0103550920757081,-0.029164713253531,-0.00448435409203339,-0.0406824936951993,0.0498242479770462,0.0324437758692574,-0.0224872663773945,0.00579015661462979,-0.0396800582696718,-0.0378180104329942,-0.0476396591702189,-0.037202309093648,-0.0545810154760231,-0.066057755318059,-0.066738188238594,-0.0740698602145985,-0.0632530117390879,-0.0147605324824628,-0.0503983902724049,-0.0705024816371212,-0.0610621822551042,0.13919630794001,0.037101361615982,0.00554369952606903,-0.0325765930974211,-0.0104673750092354,0.666458012935588,0.644892925107141,0.569982442501083,0.535851390917073,0.616232018312266,0.652947899601044,0.59805926196688,0.664078734749049,0.721660538917014,0.702497340437823,0.00935391522236571,0.107554088357415,0.124095885848244,0.126694996876463,0.0994866657861021,0.136188094918142,0.225595802528821,0.245957896015281,0.296873352317229,0.244809818357822,0.256563152790485,0.18312909114765,0.233695056434266,0.212173334806721,0.202421824380448,0.226688833747038,0.170129653088936,0.21341014444364,0.202747324498313,0.215176460507977,0.237256177179413,0.194760036761341,0.223110635029364,0.193074754302434,0.227641792882492,0.200817258964249,0.224945695627527,0.200196440973617,0.225610192750958,0.256037680181856,0.18236190875484,0.193215003238456,0.225908880981401,0.208706010553967,0.112851695560489,0.234643384927172,0.182836326122597,0.198658027989675,0.148884728247323,0.152127558022628,0.0750628156119633
|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0.0455894054315693,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209261875659622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0257492958628459,0.0195331918343453,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143010495079131,0.292573464967924,0,0,0,0,0,0,0,0,0.0357195305565455,0,0,0.327047589267698,0.216922868005625,0.0358137440153343,0.0929615792816322,0,0.574350919549834,0.646504800304045,0.67684044784567,0.19399561902547,0.238473616234711,0.310018887324488,0.650328383871865,0.693668769806024,0.740581929404724,0.439655572891753,0.442489026371126,0.224592141049884,0.0464738639419632,0.0887435625870942,0,0,0,0,0,0,0.0906685048347007,0,0,0,0.0682489587942478,0,0,0,0,0,0,0.0469568706916304,0,0.500385736409911,0.0694776635602275,0.11044491244481,0.127420627728404,0.197084727399314,0.257171692281448,0.256964827603646,0,0,0,0,0,0,0,0.466380979062789,0.373235061194224,0,0,0,0,0.835371466738859,0.67987711166762,0.325880148861757,0.533277536568332,0.483484199494435,0.624961581619767,0.595714639863037,0,0,0,0.1825495893409,0.0531247310291112,0,0.0324971260167613,0.0876889746819101,0.114668089983934,0.0990682757404326,0.137230643015465,0.308524606664259,0,0.0105689487782712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585052964060657,0.263019795791895,0,0,0,0.0282674442465581,0.0445316524101023,0.000459877853143873,0,0.066351260093781,0.0302671602728249,0.0223923201318767,0,0.0333048875319817,0,0,0,0.0576500510090373,0,0.0966880605202262,0,0.00468694010007767,0,0.0444282465314574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00693280127912,0.0346543345964761,0,0,0,0,0,0,0,0,0,0,0.613898892845109,0.674608964990375,0,0,0,0.0543840793652661,0.120160363876608,0,0.0105168579295663,0.054126280606808,0,0.111348509539896,0.198828220723233,0.598778096513299,0,0,0,0,0,0.0937073478628435,0.0179242725520468,0.0750375819757342,0.0096467313736675,0.116420155980149,0.0499142369709586,0.134665885471472,0.113580682702386,0.12656869291418,0,0,1.12774572121696,0.18458403607709,0.0999282245587464,0.351307281548276,0.398950504377068,0.605124271438614,0.641365795344849,0.571449301613195,0,0,0,0,0,0,0,0,0.0437331379432864,0.730052365404527,0,0,0,0,0,0,0,0,0,0,0,0,0.0222709268946923,0.0255369038072135,0,0.0386085227013551,0.008665220992094,0.0110525037048486,0,0,0,0,0,0,0.0263777085807213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0434752370430709,0,0,0,0,0.547787939524846,0.492495422594637,0.378112802477786,0.336196520417944,0.42991249686467,0.572267538161743,0.371076178555103,0.431320908178442,0.593523566358741,0.563537428784556,0,0.0316472924277447,0.125741715066384,0.00081368995821285,0.0278045626909125,0.0679933621478645,0.123437230911067,0.16602206578868,0.24754735497548,0.171910729672159,0.172425839867615,0.0606473800956341,0.0885202958423447,0.0724274703914441,0.0598894466328067,0.0602307747472013,0.0670763113574348,0.100499963787066,0.141858027010983,0.0596387295197733,0.0320266975187047,0.0735056695839027,0.162667891186694,0.0967268521752985,0.109763956337667,0.0988422351985795,0.117433454869724,0.101427320830301,0.0977994419593992,0.096721241723504,0.0486884105045233,0.0766218792953725,0.109547025835677,0.119899107413962,0,0.0968441960560167,0.091291089277545,0.0381936783899936,0.0760168881589905,0.122644697176553,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:44, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:87578204..87578234,+p2@Bzrap1
Mm9::chr17:8717717..8717743,-p@chr17:8717717..8717743
-
Mm9::chr1:79432827..79432840,-p@chr1:79432827..79432840
-
Mm9::chr1:79432904..79432923,-p@chr1:79432904..79432923
-
Mm9::chr1:79436578..79436589,-p3@Scg2
Mm9::chr1:79436590..79436610,-p1@Scg2
Mm9::chr1:79436614..79436655,-p2@Scg2
Mm9::chr3:154327125..154327176,+p1@4922501L14Rik
Mm9::chr3:65106677..65106687,-p3@uc008pkk.1
Mm9::chr8:71080916..71080951,-p@chr8:71080916..71080951
-
Mm9::chrX:100551830..100551852,+p2@Chic1
Mm9::chrX:70656436..70656464,+p1@Zfp92


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:608&oldid=2149894"