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MCL coexpression mm9:1508: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00161935608042667;231997,14231!GO:0016859;cis-trans isomerase activity;0.00161935608042667;231997,14231!GO:0006457;protein folding;0.0131540136734545;231997,14231!GO:0016853;isomerase activity;0.0131540136734545;231997,14231!GO:0004713;protein-tyrosine kinase activity;0.0131540136734545;14302,18214!GO:0044267;cellular protein metabolic process;0.0244500629994072;14302,18214,231997,14231!GO:0044260;cellular macromolecule metabolic process;0.0244500629994072;14302,18214,231997,14231!GO:0019538;protein metabolic process;0.0244500629994072;14302,18214,231997,14231!GO:0042127;regulation of cell proliferation;0.0293659329553675;14302,18214!
|gostat_on_MCL_coexpression=GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00161935608042667;231997,14231!GO:0016859;cis-trans isomerase activity;0.00161935608042667;231997,14231!GO:0006457;protein folding;0.0131540136734545;231997,14231!GO:0016853;isomerase activity;0.0131540136734545;231997,14231!GO:0004713;protein-tyrosine kinase activity;0.0131540136734545;14302,18214!GO:0044267;cellular protein metabolic process;0.0244500629994072;14302,18214,231997,14231!GO:0044260;cellular macromolecule metabolic process;0.0244500629994072;14302,18214,231997,14231!GO:0019538;protein metabolic process;0.0244500629994072;14302,18214,231997,14231!GO:0042127;regulation of cell proliferation;0.0293659329553675;14302,18214!
}}
}}

Revision as of 12:58, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:34203221..34203251,+p4@Frk
Mm9::chr15:99650503..99650585,-p1@Lima1
Mm9::chr1:172040875..172040954,-p1@Ddr2
Mm9::chr2:76511096..76511185,-p1@Fkbp7
Mm9::chr6:54543133..54543211,-p1@Fkbp14


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003755peptidyl-prolyl cis-trans isomerase activity0.00161935608042667
GO:0016859cis-trans isomerase activity0.00161935608042667
GO:0006457protein folding0.0131540136734545
GO:0016853isomerase activity0.0131540136734545
GO:0004713protein-tyrosine kinase activity0.0131540136734545
GO:0044267cellular protein metabolic process0.0244500629994072
GO:0044260cellular macromolecule metabolic process0.0244500629994072
GO:0019538protein metabolic process0.0244500629994072
GO:0042127regulation of cell proliferation0.0293659329553675



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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