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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0031424;keratinization;0.000267571399836991;20766,20759!GO:0009913;epidermal cell differentiation;0.000267571399836991;20766,20759!GO:0048730;epidermis morphogenesis;0.000352384153260059;20766,20759!GO:0048729;tissue morphogenesis;0.000623045745908666;20766,20759!GO:0008544;epidermis development;0.000755167530958234;20766,20759!GO:0007398;ectoderm development;0.000755167530958234;20766,20759!GO:0009888;tissue development;0.00500915138725218;20766,20759!GO:0005149;interleukin-1 receptor binding;0.0123193131643097;69677!GO:0001533;cornified envelope;0.01716202639937;20759!GO:0007566;embryo implantation;0.01716202639937;20759!GO:0030216;keratinocyte differentiation;0.01716202639937;20759!GO:0042698;menstrual cycle;0.025861003355431;20759!GO:0007565;female pregnancy;0.025861003355431;20759!GO:0009653;anatomical structure morphogenesis;0.0363269278815307;20766,20759!GO:0032504;multicellular organism reproduction;0.0363269278815307;20759!GO:0048609;reproductive process in a multicellular organism;0.0363269278815307;20759!GO:0048513;organ development;0.0440869861222759;20766,20759!
|gostat_on_MCL_coexpression=GO:0031424;keratinization;0.000267571399836991;20766,20759!GO:0009913;epidermal cell differentiation;0.000267571399836991;20766,20759!GO:0048730;epidermis morphogenesis;0.000352384153260059;20766,20759!GO:0048729;tissue morphogenesis;0.000623045745908666;20766,20759!GO:0008544;epidermis development;0.000755167530958234;20766,20759!GO:0007398;ectoderm development;0.000755167530958234;20766,20759!GO:0009888;tissue development;0.00500915138725218;20766,20759!GO:0005149;interleukin-1 receptor binding;0.0123193131643097;69677!GO:0001533;cornified envelope;0.01716202639937;20759!GO:0007566;embryo implantation;0.01716202639937;20759!GO:0030216;keratinocyte differentiation;0.01716202639937;20759!GO:0042698;menstrual cycle;0.025861003355431;20759!GO:0007565;female pregnancy;0.025861003355431;20759!GO:0009653;anatomical structure morphogenesis;0.0363269278815307;20766,20759!GO:0032504;multicellular organism reproduction;0.0363269278815307;20759!GO:0048609;reproductive process in a multicellular organism;0.0363269278815307;20759!GO:0048513;organ development;0.0440869861222759;20766,20759!
}}
}}

Revision as of 13:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:24008693..24008717,+p1@Il1f8
Mm9::chr3:92211905..92211919,+p1@Sprr2e
p1@Sprr2i
p2@Sprr2f
Mm9::chr3:92260779..92260806,-p@chr3:92260779..92260806
-
Mm9::chr3:92261412..92261436,-p@chr3:92261412..92261436
-
Mm9::chr7:50982397..50982411,+p@chr7:50982397..50982411
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0031424keratinization0.000267571399836991
GO:0009913epidermal cell differentiation0.000267571399836991
GO:0048730epidermis morphogenesis0.000352384153260059
GO:0048729tissue morphogenesis0.000623045745908666
GO:0008544epidermis development0.000755167530958234
GO:0007398ectoderm development0.000755167530958234
GO:0009888tissue development0.00500915138725218
GO:0005149interleukin-1 receptor binding0.0123193131643097
GO:0001533cornified envelope0.01716202639937
GO:0007566embryo implantation0.01716202639937
GO:0030216keratinocyte differentiation0.01716202639937
GO:0042698menstrual cycle0.025861003355431
GO:0007565female pregnancy0.025861003355431
GO:0009653anatomical structure morphogenesis0.0363269278815307
GO:0032504multicellular organism reproduction0.0363269278815307
GO:0048609reproductive process in a multicellular organism0.0363269278815307
GO:0048513organ development0.0440869861222759



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}