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MCL coexpression mm9:2853: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0042562;hormone binding;0.00657426176518929;68465!GO:0009755;hormone-mediated signaling;0.00657426176518929;68465!GO:0009725;response to hormone stimulus;0.0082178272064866;68465!GO:0019395;fatty acid oxidation;0.0082178272064866;68465!GO:0046982;protein heterodimerization activity;0.0197227852955679;68465!GO:0006631;fatty acid metabolic process;0.0388977154440366;68465!GO:0042802;identical protein binding;0.0388977154440366;68465!GO:0046983;protein dimerization activity;0.0388977154440366;68465!GO:0032787;monocarboxylic acid metabolic process;0.0388977154440366;68465!GO:0009719;response to endogenous stimulus;0.041089136032433;68465!
|gostat_on_MCL_coexpression=GO:0042562;hormone binding;0.00657426176518929;68465!GO:0009755;hormone-mediated signaling;0.00657426176518929;68465!GO:0009725;response to hormone stimulus;0.0082178272064866;68465!GO:0019395;fatty acid oxidation;0.0082178272064866;68465!GO:0046982;protein heterodimerization activity;0.0197227852955679;68465!GO:0006631;fatty acid metabolic process;0.0388977154440366;68465!GO:0042802;identical protein binding;0.0388977154440366;68465!GO:0046983;protein dimerization activity;0.0388977154440366;68465!GO:0032787;monocarboxylic acid metabolic process;0.0388977154440366;68465!GO:0009719;response to endogenous stimulus;0.041089136032433;68465!
}}
}}

Revision as of 13:19, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:49063373..49063398,-p2@Fam120a
Mm9::chr13:49063403..49063437,-p1@Fam120a
Mm9::chr6:119338689..119338757,-p2@Adipor2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042562hormone binding0.00657426176518929
GO:0009755hormone-mediated signaling0.00657426176518929
GO:0009725response to hormone stimulus0.0082178272064866
GO:0019395fatty acid oxidation0.0082178272064866
GO:0046982protein heterodimerization activity0.0197227852955679
GO:0006631fatty acid metabolic process0.0388977154440366
GO:0042802identical protein binding0.0388977154440366
GO:0046983protein dimerization activity0.0388977154440366
GO:0032787monocarboxylic acid metabolic process0.0388977154440366
GO:0009719response to endogenous stimulus0.041089136032433



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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