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MCL coexpression mm9:3009: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000466!4.61e-13!79;UBERON:0005256!4.61e-10!45;UBERON:0002107!9.03e-10!22;UBERON:0007499!9.03e-10!22;UBERON:0006925!9.03e-10!22;UBERON:0009497!9.03e-10!22;UBERON:0000015!9.03e-10!22;UBERON:0002423!9.03e-10!22;UBERON:0006235!9.03e-10!22;UBERON:0008835!9.03e-10!22;UBERON:0003894!9.03e-10!22;UBERON:0004161!9.03e-10!22;UBERON:0008836!9.03e-10!22;UBERON:0009854!2.06e-09!23;UBERON:0009856!2.06e-09!23;UBERON:0002365!6.31e-08!25;UBERON:0002330!6.31e-08!25;UBERON:0002100!6.66e-08!90;UBERON:0003914!1.54e-07!47;UBERON:0005177!3.70e-07!79;UBERON:0000991!5.70e-07!18;UBERON:0005564!5.70e-07!18;UBERON:0003101!6.27e-07!16;UBERON:0000079!6.27e-07!16;UBERON:0004176!6.29e-07!17;UBERON:0009196!6.29e-07!17;UBERON:0009117!6.29e-07!17;UBERON:0002553!6.38e-07!39;UBERON:0003886!7.22e-07!38;UBERON:0005156!9.98e-07!26;UBERON:0000990!9.98e-07!26
}}
}}

Revision as of 19:23, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:79728777..79728780,+p@chr15:79728777..79728780
+
Mm9::chr3:107820729..107820744,-p1@Gstm1
Mm9::chr5:117083614..117083616,-p1@ENSMUST00000168605


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
immaterial anatomical entity4.61e-1379
trunk mesenchyme4.61e-1045
liver9.03e-1022
epithelial sac9.03e-1022
digestive gland9.03e-1022
epithelium of foregut-midgut junction9.03e-1022
anatomical boundary9.03e-1022
hepatobiliary system9.03e-1022
foregut-midgut junction9.03e-1022
hepatic diverticulum9.03e-1022
liver primordium9.03e-1022
septum transversum9.03e-1022
liver bud9.03e-1022
digestive tract diverticulum2.06e-0923
sac2.06e-0923
exocrine gland6.31e-0825
exocrine system6.31e-0825
trunk6.66e-0890
epithelial tube1.54e-0747
trunk region element3.70e-0779
gonad5.70e-0718
gonad primordium5.70e-0718
male organism6.27e-0716
male reproductive system6.27e-0716
external genitalia6.29e-0717
indifferent external genitalia6.29e-0717
indifferent gonad6.29e-0717
anatomical cavity6.38e-0739
body cavity precursor7.22e-0738
reproductive structure9.98e-0726
reproductive system9.98e-0726


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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