FFCP PHASE1:Mm9::chr19:8553520..8553524,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=38|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:8553520..8553524,-|id=chr19:8553520..8553524,-|ontology_enrichment_celltype=CL:0000791!5.44e-08!9;CL:0000789!5.44e-08!9;CL:0002420!5.44e-08!9;CL:0002419!5.44e-08!9;CL:0000790!5.44e-08!9;CL:0000624!3.52e-07!8|ontology_enrichment_celltype_v019_2=CL:0002092,1.96e-19,3;CL:0002540,1.96e-19,3;CL:0000878,2.15e-12,2;CL:0000129,2.15e-12,2;CL:0000624,3.38e-12,8;CL:0000738,3.86e-12,17;CL:0002087,3.86e-12,17;CL:0000791,7.23e-11,9;CL:0000789,7.23e-11,9;CL:0002420,7.23e-11,9;CL:0002419,7.23e-11,9;CL:0000790,7.23e-11,9;CL:0002320,1.42e-09,46;CL:0000134,1.42e-09,46;CL:0000084,6.28e-09,11;CL:0000827,6.28e-09,11;CL:0000838,3.36e-08,12;CL:0002031,3.84e-08,25;CL:0000219,5.39e-08,54;CL:0000542,1.40e-07,13;CL:0000051,1.40e-07,13;CL:0000815,2.79e-07,1;CL:0000792,2.79e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.17e-07!45;UBERON:0003061!1.17e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.42e-09,46;UBERON:0002371,2.12e-09,16;UBERON:0002390,1.18e-07,45;UBERON:0003061,1.18e-07,45;UBERON:0000998,1.83e-07,1;UBERON:0007194,1.83e-07,1;UBERON:0006868,1.83e-07,1;UBERON:0002193,4.02e-07,48;UBERON:0002405,4.02e-07,48;UBERON:0001474,8.47e-07,22;UBERON:0004765,8.47e-07,22;UBERON:0001434,8.47e-07,22|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,0,0,2.06597317506522,0.422366166455,0.70219357896598,0.171217968225505,0.0797721589953364,1.36960583944965,1.39872643870396,0.333109761815663,0.404950534779652,0,0,0.274228867211478,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0.139986421625363,0,0,2.90144856804538,0.672187598284928,0,0.286533439938757,1.03134418455488,0,0,0,0,0,4.49949858640699,6.92206453796882,5.6838409195688,1.19840044207362,1.15265491596466,0.103689612308478,0.270011876663381,0,0,0,0,0,0,0,0.383062014255563,0,0,0.0914876436024097,0,0.279182999001381,1.12552522006336,0.30559649555362,0.294628585473668,0,0,0.075726193333184,0,0,0.860423876981386,0.679971333707751,0.539703191637817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0.304465478312141,0,0,0.23517741427141,0,0.741584903203122,0,0.884610551949874,0,0.220841518460394,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0.255715457330331,0,0.324482526135515,0,0,0.252722758433675,0,0,0,0,0,0.544291993210623,2.17793324484245,1.3118241438362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0.154267112887378,0,0,0.233530684734339,0,0,0,0.146199987425332,0.658650345873152,0.268412837520744,0.210289948564127,0.102904612379284,0,0.264450566663544,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0.126473074248515,0,0,0,0,0,0,0.224862112384854,0,0,0.50925170356284,0.863088412352432,0.324270453550071,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0.44292937929755,0.318909537314974,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,0,0,0.327869890753351,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0.178368817602071,0,0,0,0.42366414172764,0.441056796109924,0,0,0,0,0,0.291480836629851,0,0,0,0,0.376736914009382,0.683471138605126,1.14389086603261,0.169978429993855,0.139951452323658,0.276399947608848,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0.13020438484395,0.104859344425711,0.241584120826006,0,0.316011120628178,0,0,0,0,0.198681354781265,0.360586348559907,0,0.403865799792591,0.228620419965,0.201652370273681,0.779663045918019,0.384847366561318,0.818138315270983,0,0,0,0,0,0,0.183151624267265,0,3.51100472824754,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0.231867835620421|short_description=p@chr19:8553520..8553524,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=38 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:8553520..8553524,- | |||
|id=chr19:8553520..8553524,- | |||
|ontology_enrichment_celltype=CL:0000791!5.44e-08!9;CL:0000789!5.44e-08!9;CL:0002420!5.44e-08!9;CL:0002419!5.44e-08!9;CL:0000790!5.44e-08!9;CL:0000624!3.52e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002092,1.96e-19,3;CL:0002540,1.96e-19,3;CL:0000878,2.15e-12,2;CL:0000129,2.15e-12,2;CL:0000624,3.38e-12,8;CL:0000738,3.86e-12,17;CL:0002087,3.86e-12,17;CL:0000791,7.23e-11,9;CL:0000789,7.23e-11,9;CL:0002420,7.23e-11,9;CL:0002419,7.23e-11,9;CL:0000790,7.23e-11,9;CL:0002320,1.42e-09,46;CL:0000134,1.42e-09,46;CL:0000084,6.28e-09,11;CL:0000827,6.28e-09,11;CL:0000838,3.36e-08,12;CL:0002031,3.84e-08,25;CL:0000219,5.39e-08,54;CL:0000542,1.40e-07,13;CL:0000051,1.40e-07,13;CL:0000815,2.79e-07,1;CL:0000792,2.79e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.17e-07!45;UBERON:0003061!1.17e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.42e-09,46;UBERON:0002371,2.12e-09,16;UBERON:0002390,1.18e-07,45;UBERON:0003061,1.18e-07,45;UBERON:0000998,1.83e-07,1;UBERON:0007194,1.83e-07,1;UBERON:0006868,1.83e-07,1;UBERON:0002193,4.02e-07,48;UBERON:0002405,4.02e-07,48;UBERON:0001474,8.47e-07,22;UBERON:0004765,8.47e-07,22;UBERON:0001434,8.47e-07,22 | |||
|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,0,0,2.06597317506522,0.422366166455,0.70219357896598,0.171217968225505,0.0797721589953364,1.36960583944965,1.39872643870396,0.333109761815663,0.404950534779652,0,0,0.274228867211478,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0.139986421625363,0,0,2.90144856804538,0.672187598284928,0,0.286533439938757,1.03134418455488,0,0,0,0,0,4.49949858640699,6.92206453796882,5.6838409195688,1.19840044207362,1.15265491596466,0.103689612308478,0.270011876663381,0,0,0,0,0,0,0,0.383062014255563,0,0,0.0914876436024097,0,0.279182999001381,1.12552522006336,0.30559649555362,0.294628585473668,0,0,0.075726193333184,0,0,0.860423876981386,0.679971333707751,0.539703191637817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0.304465478312141,0,0,0.23517741427141,0,0.741584903203122,0,0.884610551949874,0,0.220841518460394,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0.255715457330331,0,0.324482526135515,0,0,0.252722758433675,0,0,0,0,0,0.544291993210623,2.17793324484245,1.3118241438362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0.154267112887378,0,0,0.233530684734339,0,0,0,0.146199987425332,0.658650345873152,0.268412837520744,0.210289948564127,0.102904612379284,0,0.264450566663544,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0.126473074248515,0,0,0,0,0,0,0.224862112384854,0,0,0.50925170356284,0.863088412352432,0.324270453550071,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0.44292937929755,0.318909537314974,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,0,0,0.327869890753351,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0.178368817602071,0,0,0,0.42366414172764,0.441056796109924,0,0,0,0,0,0.291480836629851,0,0,0,0,0.376736914009382,0.683471138605126,1.14389086603261,0.169978429993855,0.139951452323658,0.276399947608848,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0.234714477291508,0.13020438484395,0.104859344425711,0.241584120826006,0,0.316011120628178,0,0,0,0,0.198681354781265,0.360586348559907,0,0.403865799792591,0.228620419965,0.201652370273681,0.779663045918019,0.384847366561318,0.818138315270983,0,0,0,0,0,0,0.183151624267265,0,3.51100472824754,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0.231867835620421 | |||
|short_description=p@chr19:8553520..8553524,- | |||
}} |
Revision as of 18:26, 13 September 2013
Short description: | p@chr19:8553520..8553524, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:8553520..8553524, - |
Coexpression cluster: | MCL_coexpression_mm9:38 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow cell | 1.96e-19 | 3 |
mesenchymal stem cell of the bone marrow | 1.96e-19 | 3 |
central nervous system macrophage | 2.15e-12 | 2 |
microglial cell | 2.15e-12 | 2 |
CD4-positive, alpha-beta T cell | 3.38e-12 | 8 |
leukocyte | 3.86e-12 | 17 |
nongranular leukocyte | 3.86e-12 | 17 |
mature alpha-beta T cell | 7.23e-11 | 9 |
alpha-beta T cell | 7.23e-11 | 9 |
immature T cell | 7.23e-11 | 9 |
mature T cell | 7.23e-11 | 9 |
immature alpha-beta T cell | 7.23e-11 | 9 |
connective tissue cell | 1.42e-09 | 46 |
mesenchymal cell | 1.42e-09 | 46 |
T cell | 6.28e-09 | 11 |
pro-T cell | 6.28e-09 | 11 |
lymphoid lineage restricted progenitor cell | 3.36e-08 | 12 |
hematopoietic lineage restricted progenitor cell | 3.84e-08 | 25 |
motile cell | 5.39e-08 | 54 |
lymphocyte | 1.40e-07 | 13 |
common lymphoid progenitor | 1.40e-07 | 13 |
regulatory T cell | 2.79e-07 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.42e-09 | 46 |
bone marrow | 2.12e-09 | 16 |
hematopoietic system | 1.18e-07 | 45 |
blood island | 1.18e-07 | 45 |
seminal vesicle | 1.83e-07 | 1 |
vesicular gland | 1.83e-07 | 1 |
seminal fluid secreting gland | 1.83e-07 | 1 |
hemolymphoid system | 4.02e-07 | 48 |
immune system | 4.02e-07 | 48 |
bone element | 8.47e-07 | 22 |
skeletal element | 8.47e-07 | 22 |
skeletal system | 8.47e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.