FFCP PHASE1:Mm9::chr17:43013366..43013380,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=12488|HGNC=|MCL_coexpression_id=2212|UniProt=Q9JLQ0,B2RRE8|association_with_transcript=0bp_to_ENSMUST00000024709,NM_009847,uc008cot.1,uc012atp.1_5end|description=CAGE_peak_3_at_Cd2ap_5end|id=chr17:43013366..43013380,-|ontology_enrichment_celltype=CL:0002321!6.65e-13!70;CL:0000220!6.65e-13!70;CL:0000066!6.01e-10!25;CL:0000548!3.29e-09!115;CL:0000004!3.29e-09!115;CL:0000255!3.29e-09!115;CL:0000223!6.69e-08!20;CL:0002371!7.23e-08!118;CL:0002076!1.00e-07!15|ontology_enrichment_celltype_v019_2=CL:0002321,1.73e-14,70;CL:0000066,1.12e-11,25;CL:0000223,1.16e-09,20;CL:0002076,6.69e-09,15;CL:0000107,1.61e-07,9;CL:0000075,6.24e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.09e-08!15;UBERON:0001242!2.05e-07!13;UBERON:0000060!2.05e-07!13;UBERON:0001262!2.05e-07!13;UBERON:0004786!2.05e-07!13;UBERON:0004923!2.26e-07!24;UBERON:0000010!2.97e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.57e-10,15;UBERON:0000010,1.47e-08,11;UBERON:0001242,1.64e-08,13;UBERON:0001262,1.64e-08,13;UBERON:0004786,1.64e-08,13;UBERON:0002410,1.61e-07,9;UBERON:0004923,2.55e-07,24|phase1_expression=0.80074423552397,56.1850406299371,52.7799117691862,36.2957053568196,26.0465779572101,35.9261641891444,29.6688053556318,2.1950964985068,0.422366166455,3.97909694747389,0,1.83475965689274,0.342401459862411,5.94458736449182,1.66554880907831,0.404950534779652,0.699561878128147,0.946386496074713,1.7824876368746,1.69755860719212,7.56885282344521,0,0,31.0385300219209,29.8232065387321,34.4539178469012,50.8299155467708,35.9836958585435,26.9833255628051,34.2760976473506,23.281703618807,0,1.23012957516914,0,0.577703239502549,2.99222361645286,2.85837098767317,0,0,0,0,0,0,3.65100772129174,4.56196190487815,5.50640256485045,1.56478268869608,0.65407546914134,0.659058548203415,1.1665793944457,1.1198913730029,2.87505128729943,1.34226084846189,0,1.00828139742739,5.14518872071894,8.88253663810146,9.28209766099396,0.606949382578793,0.528990979272033,0,2.03306719241479,0,1.7997994345628,0,0,0.898800331555214,0.384218305321555,0.622137673850866,0.405017814995072,0,1.71390590642282,1.98781686856452,0.61245399607477,0.383381884072945,0.919218786610021,1.10115880999389,2.29837208553338,3.37934373163736,0.527545150920775,0.365950574409639,0,1.3959149950069,3.37657566019008,3.36156145108982,2.94628585473668,2.70506193518296,1.4911955666024,3.02904773332736,4.23200736597999,4.34796733052517,0,3.39985666853875,3.77792234146472,0,1.34408066129201,7.44355426698285,3.57903677413921,1.55871602761721,1.41335829804136,3.80277233397037,5.13305909657271,20.3844191765317,14.2213340630666,1.5154372870785,1.77351905832569,2.52762222507392,15.186456002635,2.84831672011889,0.148442139064825,0.520455980298408,0.304465478312141,1.38369298353635,0.60289056221049,1.41106448562846,0.502666365318702,2.47194967734374,0.578397427679647,0,0.970601099684455,0.883366073841574,0.484875253135222,1.86391761218122,0.292780797011547,0.41889341362691,0.766371165625774,0.239630249011841,0.599902730993408,0,0.149790639404823,1.37250180845588,0.125654352112864,0.695297280769106,0.511430914660661,0,0.486723789203273,1.32391173005411,0.622034853050465,1.0108910337347,0.631325567659422,0.130120442962704,0.689706313300419,0.900310649026746,0.60281927134286,0.272145996605311,0.896796041993948,0.749613796477831,0.776110112217047,0.215567992932842,0,0.703804496655795,0.43839146485515,0.278047249225598,1.0447564995665,0.61734640922383,0.398068533636986,0,0,0,0.414251545071004,0.234526059981096,0.720248245844059,0.946978942340841,0.787056926989615,1.07986979021165,1.39520366850245,0.536546802799238,1.28441876603886,0.493679549740441,0.164167464079095,1.05389452409612,1.31579988682799,0.439100230582101,0.805238512562231,0.420579897128254,0.102904612379284,1.65209391491899,1.58670339998127,0.213288250535234,0.464473343720877,1.41754207454303,0.605050573870028,1.33426826306922,1.90225626112559,2.37264530772256,0.494096864172033,1.50801125280162,1.1937388322469,2.14460495831032,0.898819408654221,1.29682829924817,1.39398891278057,0.189667900953082,1.02823661348756,0,2.24016460629846,0.775809948670503,2.17421041659988,2.15004226222475,1.18088118383682,1.56998727841375,1.1105744752962,1.48226313543574,0.667380422864376,0.393117990226406,0,0.405720242777006,0.964708639009667,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0.372140947668503,0.936113019343682,0,1.07638448113147,0.482443521363367,1.66277871149944,0.568474235311454,0,0.169745085775188,0.469380496577004,1.50755631697634,1.6663054862021,2.53673742215138,1.7339865851681,1.32878813789265,0.956728611944923,0.81931657357869,2.41758974612254,0.867894351489069,3.01582567878545,4.89515115436839,1.96705709207614,2.48343071674259,0.321101179975584,0.586058432961016,4.09837363441689,0,6.94118082715765,8.19921363022941,8.61693590931196,8.60287672629187,6.68396022247182,6.51076020814315,7.69140333182299,9.9366991689846,6.32460444714438,0.642642632843614,1.70328102249922,0.534196811001766,1.46598263418218,0.659880491890142,1.32745138339963,0.242780636154981,0.604647113929502,0.188605079755898,0.885905678642318,1.22974059177571,1.55056975900933,1.09060118843252,0.712994756769443,1.26414703174326,0,0,1.02131881726136,0.720244376125241,0.258717367565509,0.428674070063185,1.24138163549592,0.356737635204141,0.164549020602121,0.304464949114599,4.4587624532105,2.33015277950202,1.32317038832977,2.4732937941222,1.29171541356724,0.784068024066026,0.835606408021955,0.656563598980245,1.1659233465194,0.556275906031529,0.854354403989263,0.206386867963223,0.925972636848558,0.565105371014073,1.23024804948923,0.686334519619568,0,0,0,1.90934123603023,0.158167996790568,1.21991680276109,0.86404272657441,0.209088296014469,0,1.07891477107857,1.23980183588004,0.523511883968059,1.16653475962614,0.621339313086926,0,0.598066184175915,0.66183396182839,0.972255941720238,0.258319646955462,0.844780627453891,1.05621514781179,1.5624526181274,1.8874681996628,0.724752362478018,0.288030006257865,0.632022241256357,0.202725215290164,0.308132871494482,0.129920822977795,0.537080087002444,0.39736270956253,0.120195449519969,0.147689527174577,0.302899349844443,0.0762068066549998,0.403304740547362,0.0974578807397524,0.384847366561318,0.467507608726276,0,2.66383144048878,2.51198798506532,1.00730769818447,1.73870634628971,3.00291960721891,1.64836461840539,1.92931541171159,1.50471631210609,0.564751842617067,0,0,0.515559547031063,0,0,0,0.45032120322422,0,0.51776031175182,0.103787347584177,0,0.512200817262403,0.486213434136588,0.628839487883947,0.551530525350042,0.666740183404846,0.618105171716683,0.320919209591815,0.758091635291392,0.50695859978048,0.943131706930381,1.03005658216871,0.768301828858431,1.20614484806788,0.952587382566147,1.62238056322798,0.964546102318525,1.23625770240992,2.35518272215036,0,0.70990322463735,0.715308569841963,0.436039249896986,0.658765662907314,1.09998990259179,1.28049581010941,1.31534855718921,0.950628796921032,0,0.830445126869219,1.37906275325789,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,1.16965804222704,0.859484216193193,0.382576664137687,0.441182838239031,0.927471342481686|short_description=p3@Cd2ap}} | ||
|EntrezGene=12488 | |||
|HGNC= | |||
|MCL_coexpression_id=2212 | |||
|UniProt=Q9JLQ0,B2RRE8 | |||
|association_with_transcript=0bp_to_ENSMUST00000024709,NM_009847,uc008cot.1,uc012atp.1_5end | |||
|description=CAGE_peak_3_at_Cd2ap_5end | |||
|id=chr17:43013366..43013380,- | |||
|ontology_enrichment_celltype=CL:0002321!6.65e-13!70;CL:0000220!6.65e-13!70;CL:0000066!6.01e-10!25;CL:0000548!3.29e-09!115;CL:0000004!3.29e-09!115;CL:0000255!3.29e-09!115;CL:0000223!6.69e-08!20;CL:0002371!7.23e-08!118;CL:0002076!1.00e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.73e-14,70;CL:0000066,1.12e-11,25;CL:0000223,1.16e-09,20;CL:0002076,6.69e-09,15;CL:0000107,1.61e-07,9;CL:0000075,6.24e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.09e-08!15;UBERON:0001242!2.05e-07!13;UBERON:0000060!2.05e-07!13;UBERON:0001262!2.05e-07!13;UBERON:0004786!2.05e-07!13;UBERON:0004923!2.26e-07!24;UBERON:0000010!2.97e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.57e-10,15;UBERON:0000010,1.47e-08,11;UBERON:0001242,1.64e-08,13;UBERON:0001262,1.64e-08,13;UBERON:0004786,1.64e-08,13;UBERON:0002410,1.61e-07,9;UBERON:0004923,2.55e-07,24 | |||
|phase1_expression=0.80074423552397,56.1850406299371,52.7799117691862,36.2957053568196,26.0465779572101,35.9261641891444,29.6688053556318,2.1950964985068,0.422366166455,3.97909694747389,0,1.83475965689274,0.342401459862411,5.94458736449182,1.66554880907831,0.404950534779652,0.699561878128147,0.946386496074713,1.7824876368746,1.69755860719212,7.56885282344521,0,0,31.0385300219209,29.8232065387321,34.4539178469012,50.8299155467708,35.9836958585435,26.9833255628051,34.2760976473506,23.281703618807,0,1.23012957516914,0,0.577703239502549,2.99222361645286,2.85837098767317,0,0,0,0,0,0,3.65100772129174,4.56196190487815,5.50640256485045,1.56478268869608,0.65407546914134,0.659058548203415,1.1665793944457,1.1198913730029,2.87505128729943,1.34226084846189,0,1.00828139742739,5.14518872071894,8.88253663810146,9.28209766099396,0.606949382578793,0.528990979272033,0,2.03306719241479,0,1.7997994345628,0,0,0.898800331555214,0.384218305321555,0.622137673850866,0.405017814995072,0,1.71390590642282,1.98781686856452,0.61245399607477,0.383381884072945,0.919218786610021,1.10115880999389,2.29837208553338,3.37934373163736,0.527545150920775,0.365950574409639,0,1.3959149950069,3.37657566019008,3.36156145108982,2.94628585473668,2.70506193518296,1.4911955666024,3.02904773332736,4.23200736597999,4.34796733052517,0,3.39985666853875,3.77792234146472,0,1.34408066129201,7.44355426698285,3.57903677413921,1.55871602761721,1.41335829804136,3.80277233397037,5.13305909657271,20.3844191765317,14.2213340630666,1.5154372870785,1.77351905832569,2.52762222507392,15.186456002635,2.84831672011889,0.148442139064825,0.520455980298408,0.304465478312141,1.38369298353635,0.60289056221049,1.41106448562846,0.502666365318702,2.47194967734374,0.578397427679647,0,0.970601099684455,0.883366073841574,0.484875253135222,1.86391761218122,0.292780797011547,0.41889341362691,0.766371165625774,0.239630249011841,0.599902730993408,0,0.149790639404823,1.37250180845588,0.125654352112864,0.695297280769106,0.511430914660661,0,0.486723789203273,1.32391173005411,0.622034853050465,1.0108910337347,0.631325567659422,0.130120442962704,0.689706313300419,0.900310649026746,0.60281927134286,0.272145996605311,0.896796041993948,0.749613796477831,0.776110112217047,0.215567992932842,0,0.703804496655795,0.43839146485515,0.278047249225598,1.0447564995665,0.61734640922383,0.398068533636986,0,0,0,0.414251545071004,0.234526059981096,0.720248245844059,0.946978942340841,0.787056926989615,1.07986979021165,1.39520366850245,0.536546802799238,1.28441876603886,0.493679549740441,0.164167464079095,1.05389452409612,1.31579988682799,0.439100230582101,0.805238512562231,0.420579897128254,0.102904612379284,1.65209391491899,1.58670339998127,0.213288250535234,0.464473343720877,1.41754207454303,0.605050573870028,1.33426826306922,1.90225626112559,2.37264530772256,0.494096864172033,1.50801125280162,1.1937388322469,2.14460495831032,0.898819408654221,1.29682829924817,1.39398891278057,0.189667900953082,1.02823661348756,0,2.24016460629846,0.775809948670503,2.17421041659988,2.15004226222475,1.18088118383682,1.56998727841375,1.1105744752962,1.48226313543574,0.667380422864376,0.393117990226406,0,0.405720242777006,0.964708639009667,0.25462585178142,0.287696137450811,0.162135226775035,0.274561413188081,0,0.372140947668503,0.936113019343682,0,1.07638448113147,0.482443521363367,1.66277871149944,0.568474235311454,0,0.169745085775188,0.469380496577004,1.50755631697634,1.6663054862021,2.53673742215138,1.7339865851681,1.32878813789265,0.956728611944923,0.81931657357869,2.41758974612254,0.867894351489069,3.01582567878545,4.89515115436839,1.96705709207614,2.48343071674259,0.321101179975584,0.586058432961016,4.09837363441689,0,6.94118082715765,8.19921363022941,8.61693590931196,8.60287672629187,6.68396022247182,6.51076020814315,7.69140333182299,9.9366991689846,6.32460444714438,0.642642632843614,1.70328102249922,0.534196811001766,1.46598263418218,0.659880491890142,1.32745138339963,0.242780636154981,0.604647113929502,0.188605079755898,0.885905678642318,1.22974059177571,1.55056975900933,1.09060118843252,0.712994756769443,1.26414703174326,0,0,1.02131881726136,0.720244376125241,0.258717367565509,0.428674070063185,1.24138163549592,0.356737635204141,0.164549020602121,0.304464949114599,4.4587624532105,2.33015277950202,1.32317038832977,2.4732937941222,1.29171541356724,0.784068024066026,0.835606408021955,0.656563598980245,1.1659233465194,0.556275906031529,0.854354403989263,0.206386867963223,0.925972636848558,0.565105371014073,1.23024804948923,0.686334519619568,0,0,0,1.90934123603023,0.158167996790568,1.21991680276109,0.86404272657441,0.209088296014469,0,1.07891477107857,1.23980183588004,0.523511883968059,1.16653475962614,0.621339313086926,0,0.598066184175915,0.66183396182839,0.972255941720238,0.258319646955462,0.844780627453891,1.05621514781179,1.5624526181274,1.8874681996628,0.724752362478018,0.288030006257865,0.632022241256357,0.202725215290164,0.308132871494482,0.129920822977795,0.537080087002444,0.39736270956253,0.120195449519969,0.147689527174577,0.302899349844443,0.0762068066549998,0.403304740547362,0.0974578807397524,0.384847366561318,0.467507608726276,0,2.66383144048878,2.51198798506532,1.00730769818447,1.73870634628971,3.00291960721891,1.64836461840539,1.92931541171159,1.50471631210609,0.564751842617067,0,0,0.515559547031063,0,0,0,0.45032120322422,0,0.51776031175182,0.103787347584177,0,0.512200817262403,0.486213434136588,0.628839487883947,0.551530525350042,0.666740183404846,0.618105171716683,0.320919209591815,0.758091635291392,0.50695859978048,0.943131706930381,1.03005658216871,0.768301828858431,1.20614484806788,0.952587382566147,1.62238056322798,0.964546102318525,1.23625770240992,2.35518272215036,0,0.70990322463735,0.715308569841963,0.436039249896986,0.658765662907314,1.09998990259179,1.28049581010941,1.31534855718921,0.950628796921032,0,0.830445126869219,1.37906275325789,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,1.16965804222704,0.859484216193193,0.382576664137687,0.441182838239031,0.927471342481686 | |||
|short_description=p3@Cd2ap | |||
}} | |||
Revision as of 14:33, 13 September 2013
| Short description: | p3@Cd2ap |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Cd2ap_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2212 |
| Association with transcript: | 0bp_to_ENSMUST00000024709, NM_009847, uc008cot.1, uc012atp.1_5end |
| EntrezGene: | Cd2ap |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 1.73e-14 | 70 |
| epithelial cell | 1.12e-11 | 25 |
| endodermal cell | 1.16e-09 | 20 |
| endo-epithelial cell | 6.69e-09 | 15 |
| autonomic neuron | 1.61e-07 | 9 |
| columnar/cuboidal epithelial cell | 6.24e-07 | 7 |
| Ontology term | p-value | n |
|---|---|---|
| mucosa | 4.57e-10 | 15 |
| peripheral nervous system | 1.47e-08 | 11 |
| intestinal mucosa | 1.64e-08 | 13 |
| wall of intestine | 1.64e-08 | 13 |
| gastrointestinal system mucosa | 1.64e-08 | 13 |
| autonomic nervous system | 1.61e-07 | 9 |
| organ component layer | 2.55e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
