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MCL coexpression mm9:192: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04092832961407,0.982289148107163,0.653001046842843,1.17697688596655,1.238408602647,1.03151309513671,0.305463042258511,0,0,1.30531819610923,1.39476692648096,0,0,0,0.290060689914576,0.244546866100346,0.159405060846962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.914226519229116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354876380541933,0,0,0,0,0,0,0,0,0,0,0.523783089486183,1.58791787870668,0.0601091194109999,0,0,0,0,0,0,0,0.156487991687508,0.65690680954157,0,0.158869788505911,0.171689969376673,0.674662332002395,0,0,1.14286789038117,0,0,0,0,0,0,0,0,0,0,0,0.137740408373976,0,0.15255853577271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158091042771083,0,0,0,0.299127173522388,0.455020670504391,0,0,0,0,0,0,0.0843266682486015,0,0,0,0,0,0.0849828766602549,0.203420156066496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0652566657696677,0,0,0,0,0,0,0,0.342216589544714,0,0,0,0,0,0,0,0,0,0.0642538110976656,0.123108665731713,0.128841727545421,0.110353348438991,0,0,0.173700201812769,0.190856315052995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108524491213051,0,0,0.0663147875126409,0.36688061805648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0865478886078475,0,0,0,0,0,0,0,1.50959786988787,0,0.0368948187299337,0.308318262152934,0.49387771709439,0.54611802010215,0,0.056886356216389,0.105986777695408,0,0,0,0,0,0,0,0,0,0.0529304404135566,0.542247300302416,0,0,0,0,0,0,0,0,0,0,0,0.461808563544067,0,0,0,0,0,0,0,0.0208870423994129,0,0,0.0773372897074742,0.110130099743907,0.091228504856109,0,0,0,0,0.248649546054984,0.0747003483965965,0.0730404042754446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000553!3.86e-11!6;CL:0000556!3.86e-11!6;CL:0000050!4.70e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!2.39e-16!51;UBERON:0002193!5.20e-08!48;UBERON:0002405!5.20e-08!48;UBERON:0002106!7.48e-07!6;UBERON:0004457!7.48e-07!6;UBERON:0000042!7.48e-07!6;UBERON:0004854!7.48e-07!6;UBERON:0009034!7.48e-07!6;UBERON:0002095!7.48e-07!6;UBERON:0004782!7.48e-07!6;UBERON:0003281!7.48e-07!6;UBERON:0009664!7.48e-07!6;UBERON:0002296!7.48e-07!6;UBERON:0005602!7.48e-07!6;UBERON:0001179!7.48e-07!6;UBERON:0006293!7.48e-07!6
|tfbs_overrepresentation_for_novel_motifs=0.0151974,0.159739,0.0115341,0.457441,3.01183,0.492422,0.0497618,0.521509,0.26175,0.0074135,0.036867,1.07855,1.19415,0.0537631,0.90776,0,0.138669,1.68954,0.111626,0.269851,1.62772,0.0758792,0.197574,0.570867,0.16103,0.0633797,0.172596,0.0303155,0.00497482,0.146969,0.0270713,0.197802,0.04458,0.128673,0.00325416,0.00710192,0.00173006,0.0449101,0.602498,0.017898,0.368813,0.0282351,0.395217,1.2208,0.0218435,0.0204453,0.0987896,0.32186,0.725961,0.0289558,0.129394,0.0736078,0.0016811,0.293909,0.306656,0.0561765,0.0947048,0.0422054,0.244879,0.0554818,0.1854,0.0773893,0.0165687,0.123566,0.0600525,0.445486,2.78832,0.714043,1.0291,0.582319,0.00929745,0.0791327,1.35193e-06,0.331647,0.000100674,6.914e-05,0.321562,0.0936296,0.998736,3.02121,0.390073,0.14818,3.22043,0.0283202,0.248509,7.02765e-08,4.98404e-05,0.020023,0.101055,0.864265,0.469,0.251923,1.12153,1.13386,0.0270101,0.336233,0.226963,0.207688,0.0989069,0.0269749,0.712766,0.574233,0.281356,0.40648,0.405068,0.0281348,0.16203,0.134057,0.00836252,0.00764046,0.579317,0.282632,0.429279,0.0382686,2.07752,0.216574,4.71882e-06,0.0233416,0.139372,0.311895,0.33573,0.73414,0.0640471,0.641867,0.520643,0.177244,0.194386,0.201596,0.410666,0.0565327,0.269307,1.05274,0.387083,0.219779,0.493018,0.00141876,0.195082,0.525848,0.451982,1.21737,0.834426,0.415684,0.241814,0.20441,0.396428,0.117838,0.675013,1.1788,0.19821,0.00252527,0.0212097,4.39023e-07,0.295048,0.00592021,0.21881,0.356288,0.0740067,0.475166,2.08553,0.0164778,0.459848,1.98372,0.177511,0.172351,0.392045,0.802894,1.57412,1.51743,1.51672e-08
|tfbs_overrepresentation_jaspar=MA0003.1;1.15295e-12,MA0004.1;0.0226833,MA0006.1;0.00300774,MA0007.1;0.0879961,MA0009.1;0.214658,MA0014.1;4.30577e-11,MA0017.1;0.174421,MA0019.1;0.110663,MA0024.1;0.187051,MA0025.1;1.76795,MA0027.1;1.70825,MA0028.1;0.00354928,MA0029.1;0.173922,MA0030.1;0.177847,MA0031.1;2.12167,MA0038.1;0.491425,MA0040.1;1.18706,MA0041.1;0.0528265,MA0042.1;0.129556,MA0043.1;0.280639,MA0046.1;0.238407,MA0048.1;0.0278163,MA0050.1;0.302298,MA0051.1;0.0666585,MA0052.1;0.228144,MA0055.1;0.00317029,MA0056.1;0,MA0057.1;0.000117807,MA0058.1;0.00844533,MA0059.1;0.00977556,MA0060.1;0.000628204,MA0061.1;0.00837493,MA0063.1;0,MA0066.1;0.0594129,MA0067.1;0.473816,MA0068.1;0.000810173,MA0069.1;0.228369,MA0070.1;3.42435,MA0071.1;0.0310254,MA0072.1;0.216436,MA0073.1;2.26617e-15,MA0074.1;0.17954,MA0076.1;0.00591694,MA0077.1;2.46047,MA0078.1;3.27194,MA0081.1;0.162164,MA0083.1;0.280072,MA0084.1;0.763469,MA0087.1;0.697219,MA0088.1;0.0823483,MA0089.1;0,MA0090.1;0.0757495,MA0091.1;1.14721,MA0092.1;0.195477,MA0093.1;0.00402865,MA0095.1;0,MA0098.1;0,MA0100.1;0.0440101,MA0101.1;0.0534676,MA0103.1;0.548486,MA0105.1;0.00358782,MA0106.1;0.0828885,MA0107.1;0.0826454,MA0108.2;0.122018,MA0109.1;0,MA0111.1;0.411674,MA0113.1;0.25015,MA0114.1;0.074204,MA0115.1;0.772392,MA0116.1;0.00299767,MA0117.1;0.259864,MA0119.1;0.0109002,MA0122.1;0.273795,MA0124.1;0.429916,MA0125.1;0.3708,MA0130.1;0,MA0131.1;0.108468,MA0132.1;0,MA0133.1;0,MA0135.1;1.49908,MA0136.1;2.18141,MA0139.1;0.00237406,MA0140.1;2.54165,MA0141.1;0.00687691,MA0142.1;5.20839,MA0143.1;0.0779835,MA0144.1;0.0772316,MA0145.1;0.00255751,MA0146.1;5.83941e-09,MA0147.1;0.00155785,MA0148.1;2.05243,MA0149.1;0.0115146,MA0062.2;9.09421e-05,MA0035.2;2.57519,MA0039.2;4.04053e-12,MA0138.2;0.341255,MA0002.2;0.357615,MA0137.2;0.035531,MA0104.2;0.000446253,MA0047.2;2.34217,MA0112.2;1.8475e-06,MA0065.2;0.00716599,MA0150.1;0.0879214,MA0151.1;0,MA0152.1;0.226097,MA0153.1;0.319381,MA0154.1;0.0535013,MA0155.1;0.000330808,MA0156.1;0.575565,MA0157.1;2.58337,MA0158.1;0,MA0159.1;0.0122694,MA0160.1;0.112268,MA0161.1;0,MA0162.1;1.07638e-09,MA0163.1;8.28934e-07,MA0164.1;0.440571,MA0080.2;1.77307,MA0018.2;0.0573449,MA0099.2;0.333371,MA0079.2;0,MA0102.2;0.812014,MA0258.1;0.00627829,MA0259.1;0.00126366,MA0442.1;0
}}

Latest revision as of 14:51, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr12:114667319..114667344,-p1@ENSMUST00000103428
p1@uc007pgf.1
p1@uc007pgl.1
Mm9::chr12:114667701..114667713,-p1@uc007pgg.1
Mm9::chr12:114826932..114826945,-p1@ENSMUST00000103443
Mm9::chr12:114849854..114849859,-p1@ENSMUST00000103445
Mm9::chr12:114940862..114940873,-p1@ENSMUST00000103450
Mm9::chr12:114974852..114974870,-p1@ENSMUST00000103452
Mm9::chr12:115298526..115298533,-p1@ENSMUST00000103469
Mm9::chr12:115391925..115391935,-p1@ENSMUST00000103474
Mm9::chr12:115538629..115538664,-p1@ENSMUST00000103482
Mm9::chr12:115561055..115561071,-p1@ENSMUST00000103483
Mm9::chr12:115673515..115673530,-p1@ENSMUST00000103489
Mm9::chr12:115725826..115725833,-p1@ENSMUST00000103493
Mm9::chr12:115751996..115752009,-p2@ENSMUST00000103494
Mm9::chr12:115752018..115752033,-p1@ENSMUST00000103494
Mm9::chr12:115777181..115777193,-p1@ENSMUST00000103496
Mm9::chr12:115822226..115822233,-p2@ENSMUST00000103498
Mm9::chr12:115822245..115822274,-p1@ENSMUST00000103498
Mm9::chr12:116118581..116118586,-p1@ENSMUST00000103513
Mm9::chr12:116184624..116184649,-p1@ENSMUST00000103517
Mm9::chr12:116432330..116432337,-p2@ENSMUST00000103525
Mm9::chr12:116746225..116746245,-p1@ENSMUST00000103535
Mm9::chr12:117219387..117219399,-p1@ENSMUST00000103551
Mm9::chr16:19063331..19063342,-p@chr16:19063331..19063342
-
Mm9::chr16:23307778..23307797,+p@chr16:23307778..23307797
+
Mm9::chr6:67559705..67559711,+p1@ENSMUST00000103303
Mm9::chr6:68252402..68252404,+p1@ENSMUST00000103322
Mm9::chr6:68686778..68686794,-p1@ENSMUST00000103331
Mm9::chr6:68757732..68757753,-p1@ENSMUST00000103334
Mm9::chr6:68813035..68813042,-p1@ENSMUST00000103336
Mm9::chr6:68880751..68880775,-p@chr6:68880751..68880775
-
Mm9::chr6:68941317..68941341,-p1@ENSMUST00000103340
Mm9::chr6:68993528..68993550,-p1@ENSMUST00000103342
Mm9::chr6:69135402..69135410,-p1@ENSMUST00000103344
Mm9::chr6:69450809..69450835,-p1@ENSMUST00000103355
Mm9::chr6:69765117..69765137,-p1@ENSMUST00000103367
Mm9::chr6:69773933..69773965,-p1@ENSMUST00000103368
Mm9::chr6:70067625..70067651,-p1@ENSMUST00000103378
Mm9::chr6:70210953..70210958,-p1@ENSMUST00000103386
Mm9::chr6:70385497..70385502,-p1@ENSMUST00000103394
Mm9::chr6:70468234..70468246,+p1@ENSMUST00000103396
Mm9::chr6:70522578..70522598,+p1@ENSMUST00000103397
Mm9::chr6:70557385..70557408,+p1@ENSMUST00000103399
Mm9::chr6:70676424..70676466,+p1@ENSMUST00000103410
Mm9::chr6:70676471..70676482,+p@chr6:70676471..70676482
+
Mm9::chr6:70676489..70676500,+p@chr6:70676489..70676500
+
Mm9::chr6:70676512..70676515,+p@chr6:70676512..70676515
+
Mm9::chr6:70676604..70676613,+p@chr6:70676604..70676613
+
Mm9::chr6:70676615..70676621,+p@chr6:70676615..70676621
+
Mm9::chr6:70676630..70676641,+p@chr6:70676630..70676641
+
Mm9::chr6:70676654..70676671,+p@chr6:70676654..70676671
+
Mm9::chr6:70676690..70676695,+p@chr6:70676690..70676695
+
Mm9::chr6:70676787..70676796,+p@chr6:70676787..70676796
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte progenitor cell3.86e-116
megakaryocyte3.86e-116
megakaryocyte-erythroid progenitor cell4.70e-079

Uber Anatomy
Ontology termp-valuen
adult organism2.39e-1651
hemolymphoid system5.20e-0848
immune system5.20e-0848
spleen7.48e-076
cavity lining7.48e-076
serous membrane7.48e-076
gastrointestinal system mesentery7.48e-076
stomach region7.48e-076
mesentery7.48e-076
gastrointestinal system serosa7.48e-076
mesentery of stomach7.48e-076
gut mesentery7.48e-076
dorsal mesentery7.48e-076
dorsal mesogastrium7.48e-076
peritoneal cavity7.48e-076
spleen primordium7.48e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.15295e-12
MA0004.10.0226833
MA0006.10.00300774
MA0007.10.0879961
MA0009.10.214658
MA0014.14.30577e-11
MA0017.10.174421
MA0019.10.110663
MA0024.10.187051
MA0025.11.76795
MA0027.11.70825
MA0028.10.00354928
MA0029.10.173922
MA0030.10.177847
MA0031.12.12167
MA0038.10.491425
MA0040.11.18706
MA0041.10.0528265
MA0042.10.129556
MA0043.10.280639
MA0046.10.238407
MA0048.10.0278163
MA0050.10.302298
MA0051.10.0666585
MA0052.10.228144
MA0055.10.00317029
MA0056.10
MA0057.10.000117807
MA0058.10.00844533
MA0059.10.00977556
MA0060.10.000628204
MA0061.10.00837493
MA0063.10
MA0066.10.0594129
MA0067.10.473816
MA0068.10.000810173
MA0069.10.228369
MA0070.13.42435
MA0071.10.0310254
MA0072.10.216436
MA0073.12.26617e-15
MA0074.10.17954
MA0076.10.00591694
MA0077.12.46047
MA0078.13.27194
MA0081.10.162164
MA0083.10.280072
MA0084.10.763469
MA0087.10.697219
MA0088.10.0823483
MA0089.10
MA0090.10.0757495
MA0091.11.14721
MA0092.10.195477
MA0093.10.00402865
MA0095.10
MA0098.10
MA0100.10.0440101
MA0101.10.0534676
MA0103.10.548486
MA0105.10.00358782
MA0106.10.0828885
MA0107.10.0826454
MA0108.20.122018
MA0109.10
MA0111.10.411674
MA0113.10.25015
MA0114.10.074204
MA0115.10.772392
MA0116.10.00299767
MA0117.10.259864
MA0119.10.0109002
MA0122.10.273795
MA0124.10.429916
MA0125.10.3708
MA0130.10
MA0131.10.108468
MA0132.10
MA0133.10
MA0135.11.49908
MA0136.12.18141
MA0139.10.00237406
MA0140.12.54165
MA0141.10.00687691
MA0142.15.20839
MA0143.10.0779835
MA0144.10.0772316
MA0145.10.00255751
MA0146.15.83941e-09
MA0147.10.00155785
MA0148.12.05243
MA0149.10.0115146
MA0062.29.09421e-05
MA0035.22.57519
MA0039.24.04053e-12
MA0138.20.341255
MA0002.20.357615
MA0137.20.035531
MA0104.20.000446253
MA0047.22.34217
MA0112.21.8475e-06
MA0065.20.00716599
MA0150.10.0879214
MA0151.10
MA0152.10.226097
MA0153.10.319381
MA0154.10.0535013
MA0155.10.000330808
MA0156.10.575565
MA0157.12.58337
MA0158.10
MA0159.10.0122694
MA0160.10.112268
MA0161.10
MA0162.11.07638e-09
MA0163.18.28934e-07
MA0164.10.440571
MA0080.21.77307
MA0018.20.0573449
MA0099.20.333371
MA0079.20
MA0102.20.812014
MA0258.10.00627829
MA0259.10.00126366
MA0442.10
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