NonredundantMotifs:5: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;670.876482999999;270.139036;334.377107;295.430212!2;1533.64341;4.842939;29.500993;2.835496!3;1548.372072;0;22.450766;0!4;0;1538.601005;0;32.221833!5;1565.780585;2.161143;2.88111;0!6;1563.716702;4.135991;2.970145;0!7;0.795134;8.993964;0;1561.03374 | |||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:SOX5.p2~SOX(8,9,10).p2~SOX2.p2~HBP1_HMGB_SSRP1_UBTF.p2~SRY.p2~SOX17.p2 /JASPAR:MA0084.1;SRY~MA0087.1;Sox5~MA0078.1;Sox17~MA0077.1;SOX9 /HOMER:SOX6_Myotubes-Sox6-ChIP-Seq(GSE32627)~SOX3_NPC-Sox3-ChIP-Seq(GSE33059)~SOX2_mES-Sox2-ChIP-Seq /UNIPROBE:Sry_secondary;SCI09~Sox8_primary;SCI09~Sox30_primary;SCI09~Sox18_primary;SCI09~Sox15_primary;SCI09~Sox1_secondary;SCI09~Sox17_primary;SCI09~Sox4;CR09~Sox4_secondary;SCI09~Sox21_secondary;SCI09~Sox11_primary;SCI09~Sox11_secondary;SCI09~Sox13_primary;SCI09~Sox14_secondary;SCI09~Sox12_primary;SCI09~Sox4_primary;SCI09~Sox5_primary;SCI09~Sox7_primary;SCI09 /HOCOMOCO:SOX15_f1~SOX9_f1~SOX13_f1~SRY_f1~SOX5_f1 | ||
|name=known5 | |name=known5 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 10:45, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known5
- db :SWISSREGULON
- Id :SOX5.p2
- name :
- score :0.14579468830249348
- External refs:
- Internal refs:
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Sub Motif Members
