NonredundantMotifs:37: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;113.962554;227.411809;316.632650999999;48.177515!2;680.587961;0;25.596568;0!3;0;0;0;706.184529!4;0;0;705.508712;0.675817!5;706.184529;0;0;0!6;0;629.003408;0;77.181121 | |PWM=PO;A;C;G;T!1;113.962554;227.411809;316.632650999999;48.177515!2;680.587961;0;25.596568;0!3;0;0;0;706.184529!4;0;0;705.508712;0.675817!5;706.184529;0;0;0!6;0;629.003408;0;77.181121 | ||
|entrez_gene_id= | |entrez_gene_id=NFE2L1 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0067.1;Pax2~MA0089.1;NFE2L1::MafG /SWISSREGULON:PAX2.p2~PAX3,7.p2~NFE2L1.p2 /HOMER:PAX5_motifB;GM12878-PAX5-ChIP-Seq /HOCOMOCO:MAFG_si~NF2L1_f1~PAX2_si | ||
|name=known37 | |name=known37 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=NFE2L1.p2 | |representative_motif_id=NFE2L1.p2 | ||
|representative_motif_name= | |representative_motif_name=NFE2L1 | ||
|score=0.551767084385364 | |score=0.551767084385364 | ||
|uniprot_entry_name= | |uniprot_entry_name=NFE2L1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known37
- db :SWISSREGULON
- Id :NFE2L1.p2
- name :NFE2L1
- score :0.551767084385364
- External refs:
- Internal refs:
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Sub Motif Members
