FFCP PHASE1:Hg19::chr16:19429257..19429270,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79838|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=22999|TSSclassifier=N|UniProt=|association_with_transcript=239bp_to_ENST00000542583,uc010var.1_5end|coexpression_cluster_id=C2361|description=CAGE_peak_7_at_TMC5_5end|id=chr16:19429257..19429270,+|ontology_enrichment_celltype=CL:0000764!1.99e-07!2;CL:0000765!1.99e-07!2;CL:0000050!1.99e-07!2;CL:0000038!1.99e-07!2;CL:0000558!1.99e-07!2;CL:0000547!1.99e-07!2;CL:0000549!1.99e-07!2;CL:0000550!1.99e-07!2;CL:0000552!1.99e-07!2|ontology_enrichment_celltype_v019=CL:0000764;1.08e-13;2!CL:0000558;1.08e-13;2!CL:0000167;3.80e-08;1!CL:0000164;3.80e-08;1!CL:0000502;3.80e-08;1!CL:0000172;3.80e-08;1!CL:0000173;3.80e-08;1|ontology_enrichment_celltype_v019_2=CL:0000764,9.79e-14,2;CL:0000765,9.79e-14,2;CL:0000050,9.79e-14,2;CL:0000038,9.79e-14,2;CL:0000558,9.79e-14,2;CL:0000547,9.79e-14,2;CL:0000549,9.79e-14,2;CL:0000550,9.79e-14,2;CL:0000552,9.79e-14,2;CL:0000167,4.07e-08,1;CL:0000164,4.07e-08,1;CL:0000502,4.07e-08,1;CL:0000172,4.07e-08,1;CL:0000173,4.07e-08,1;CL:0002351,4.07e-08,1|ontology_enrichment_development_v019=CL:0002351;3.80e-08;1!UBERON:0006242;8.23e-08;1!UBERON:0001045;1.44e-07;1!UBERON:0006595;4.85e-07;86|ontology_enrichment_disease=DOID:3493!7.62e-08!2|ontology_enrichment_disease_v019=DOID:3493;1.35e-14;2!DOID:4430;3.80e-08;1!DOID:3111;5.90e-08;1!DOID:3603;5.90e-08;1|ontology_enrichment_disease_v019_2=DOID:3493,1.35e-14,2;DOID:4430,4.07e-08,1;DOID:3111,5.70e-08,1;DOID:3603,5.70e-08,1|ontology_enrichment_uberon=UBERON:0004921!2.07e-13!129;UBERON:0004185!2.07e-13!129;UBERON:0005409!7.91e-12!35;UBERON:0000160!1.83e-11!27;UBERON:0007023!3.45e-11!115;UBERON:0004119!4.49e-11!169;UBERON:0000925!4.49e-11!169;UBERON:0006595!4.49e-11!169;UBERON:0001007!6.76e-11!155;UBERON:0001555!6.76e-11!155;UBERON:0007026!6.76e-11!155;UBERON:0001155!1.11e-08!9;UBERON:0000077!4.40e-08!130;UBERON:0003127!1.40e-07!2;UBERON:0000341!4.19e-07!2;UBERON:0000059!5.02e-07!11|ontology_enrichment_uberon_v019=UBERON:0000160;1.39e-22;17!UBERON:0005409;4.68e-22;22!UBERON:0002108;6.40e-22;4!UBERON:0004921;1.40e-16;33!UBERON:0003127;5.09e-14;2!UBERON:0001155;6.17e-12;9!UBERON:0002114;7.81e-10;2!UBERON:0000059;8.67e-10;11!UBERON:0001301;5.90e-08;1!UBERON:0004913;5.90e-08;1!UBERON:0003703;5.90e-08;1!UBERON:0001174;5.90e-08;1!UBERON:0004914;5.90e-08;1!UBERON:0001154;1.44e-07;1!UBERON:0001153;1.44e-07;1!UBERON:0009854;1.44e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.46e-22,17;UBERON:0002108,6.76e-22,4;UBERON:0005409,2.50e-19,25;UBERON:0003127,4.77e-14,2;UBERON:0004921,2.02e-12,118;UBERON:0001155,6.27e-12,9;UBERON:0001007,7.65e-11,145;UBERON:0001555,7.65e-11,145;UBERON:0007026,7.65e-11,145;UBERON:0002114,8.16e-10,2;UBERON:0000059,8.78e-10,11;UBERON:0004119,1.70e-09,160;UBERON:0000925,1.70e-09,160;UBERON:0006595,1.70e-09,160;UBERON:0007023,2.40e-08,114;UBERON:0001301,6.10e-08,1;UBERON:0004913,6.52e-08,1;UBERON:0003703,6.52e-08,1;UBERON:0001174,6.52e-08,1;UBERON:0004914,6.52e-08,1;UBERON:0001154,1.87e-07,1;UBERON:0001153,1.87e-07,1;UBERON:0001045,1.87e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,2.19259876645935,1.5686127061494,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0,0,0,0,0,0,0,0,1.19548792950642,1.10513566212459,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0.0874599999961957,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0.179515288819544,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0.843992258112108,0,0.141353071433941,0,2.98578579323551,11.1456531274207,7.94339188413713,0,0,0,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4945333648406,0,0,0,0,0,0,0.90392296312213,0,0,0,0,0,2.77488893161158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0.684347351537318,0,2.88326013932776,5.65935498358797,0.414239055347196,0,0,1.09613338542806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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79838 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=239bp_to_ENST00000542583,uc010var.1_5end | |||
|coexpression_cluster_id=C2361 | |||
|description=CAGE_peak_7_at_TMC5_5end | |||
|id=chr16:19429257..19429270,+ | |||
|ontology_enrichment_celltype=CL:0000764!1.99e-07!2;CL:0000765!1.99e-07!2;CL:0000050!1.99e-07!2;CL:0000038!1.99e-07!2;CL:0000558!1.99e-07!2;CL:0000547!1.99e-07!2;CL:0000549!1.99e-07!2;CL:0000550!1.99e-07!2;CL:0000552!1.99e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000764;1.08e-13;2!CL:0000558;1.08e-13;2!CL:0000167;3.80e-08;1!CL:0000164;3.80e-08;1!CL:0000502;3.80e-08;1!CL:0000172;3.80e-08;1!CL:0000173;3.80e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,9.79e-14,2;CL:0000765,9.79e-14,2;CL:0000050,9.79e-14,2;CL:0000038,9.79e-14,2;CL:0000558,9.79e-14,2;CL:0000547,9.79e-14,2;CL:0000549,9.79e-14,2;CL:0000550,9.79e-14,2;CL:0000552,9.79e-14,2;CL:0000167,4.07e-08,1;CL:0000164,4.07e-08,1;CL:0000502,4.07e-08,1;CL:0000172,4.07e-08,1;CL:0000173,4.07e-08,1;CL:0002351,4.07e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;3.80e-08;1!UBERON:0006242;8.23e-08;1!UBERON:0001045;1.44e-07;1!UBERON:0006595;4.85e-07;86 | |||
|ontology_enrichment_disease=DOID:3493!7.62e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;1.35e-14;2!DOID:4430;3.80e-08;1!DOID:3111;5.90e-08;1!DOID:3603;5.90e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.35e-14,2;DOID:4430,4.07e-08,1;DOID:3111,5.70e-08,1;DOID:3603,5.70e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004921!2.07e-13!129;UBERON:0004185!2.07e-13!129;UBERON:0005409!7.91e-12!35;UBERON:0000160!1.83e-11!27;UBERON:0007023!3.45e-11!115;UBERON:0004119!4.49e-11!169;UBERON:0000925!4.49e-11!169;UBERON:0006595!4.49e-11!169;UBERON:0001007!6.76e-11!155;UBERON:0001555!6.76e-11!155;UBERON:0007026!6.76e-11!155;UBERON:0001155!1.11e-08!9;UBERON:0000077!4.40e-08!130;UBERON:0003127!1.40e-07!2;UBERON:0000341!4.19e-07!2;UBERON:0000059!5.02e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.39e-22;17!UBERON:0005409;4.68e-22;22!UBERON:0002108;6.40e-22;4!UBERON:0004921;1.40e-16;33!UBERON:0003127;5.09e-14;2!UBERON:0001155;6.17e-12;9!UBERON:0002114;7.81e-10;2!UBERON:0000059;8.67e-10;11!UBERON:0001301;5.90e-08;1!UBERON:0004913;5.90e-08;1!UBERON:0003703;5.90e-08;1!UBERON:0001174;5.90e-08;1!UBERON:0004914;5.90e-08;1!UBERON:0001154;1.44e-07;1!UBERON:0001153;1.44e-07;1!UBERON:0009854;1.44e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.46e-22,17;UBERON:0002108,6.76e-22,4;UBERON:0005409,2.50e-19,25;UBERON:0003127,4.77e-14,2;UBERON:0004921,2.02e-12,118;UBERON:0001155,6.27e-12,9;UBERON:0001007,7.65e-11,145;UBERON:0001555,7.65e-11,145;UBERON:0007026,7.65e-11,145;UBERON:0002114,8.16e-10,2;UBERON:0000059,8.78e-10,11;UBERON:0004119,1.70e-09,160;UBERON:0000925,1.70e-09,160;UBERON:0006595,1.70e-09,160;UBERON:0007023,2.40e-08,114;UBERON:0001301,6.10e-08,1;UBERON:0004913,6.52e-08,1;UBERON:0003703,6.52e-08,1;UBERON:0001174,6.52e-08,1;UBERON:0004914,6.52e-08,1;UBERON:0001154,1.87e-07,1;UBERON:0001153,1.87e-07,1;UBERON:0001045,1.87e-07,1 | |||
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|short_description=p7@TMC5 | |||
}} |
Revision as of 09:31, 11 September 2013
Short description: | p7@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_TMC5_5end |
Coexpression cluster: | C2361_small_somatostatinoma_colon_signet_trachea_lung_temporal |
Association with transcript: | 239bp_to_ENST00000542583, uc010var.1_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 9.79e-14 | 2 |
erythroblast | 9.79e-14 | 2 |
megakaryocyte-erythroid progenitor cell | 9.79e-14 | 2 |
erythroid progenitor cell | 9.79e-14 | 2 |
reticulocyte | 9.79e-14 | 2 |
proerythroblast | 9.79e-14 | 2 |
basophilic erythroblast | 9.79e-14 | 2 |
polychromatophilic erythroblast | 9.79e-14 | 2 |
orthochromatic erythroblast | 9.79e-14 | 2 |
peptide hormone secreting cell | 4.07e-08 | 1 |
enteroendocrine cell | 4.07e-08 | 1 |
type D enteroendocrine cell | 4.07e-08 | 1 |
somatostatin secreting cell | 4.07e-08 | 1 |
pancreatic D cell | 4.07e-08 | 1 |
progenitor cell of endocrine pancreas | 4.07e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.46e-22 | 17 |
small intestine | 6.76e-22 | 4 |
gastrointestinal system | 2.50e-19 | 25 |
open tracheal system trachea | 4.77e-14 | 2 |
subdivision of digestive tract | 2.02e-12 | 118 |
colon | 6.27e-12 | 9 |
digestive system | 7.65e-11 | 145 |
digestive tract | 7.65e-11 | 145 |
primitive gut | 7.65e-11 | 145 |
duodenum | 8.16e-10 | 2 |
large intestine | 8.78e-10 | 11 |
endoderm-derived structure | 1.70e-09 | 160 |
endoderm | 1.70e-09 | 160 |
presumptive endoderm | 1.70e-09 | 160 |
adult organism | 2.40e-08 | 114 |
epididymis | 6.10e-08 | 1 |
hepatopancreatic ampulla | 6.52e-08 | 1 |
extrahepatic bile duct | 6.52e-08 | 1 |
common bile duct | 6.52e-08 | 1 |
duodenal papilla | 6.52e-08 | 1 |
vermiform appendix | 1.87e-07 | 1 |
caecum | 1.87e-07 | 1 |
midgut | 1.87e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.35e-14 | 2 |
somatostatinoma | 4.07e-08 | 1 |
cystadenocarcinoma | 5.70e-08 | 1 |
mucinous cystadenocarcinoma | 5.70e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.