FFCP PHASE1:Hg19::chr17:48270182..48270219,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=W|UniProt=|association_with_transcript=-382bp_to_ENST00000504289_5end|coexpression_cluster_id=C59|description=CAGE_peak_52_at_COL1A1_5end|id=chr17:48270182..48270219,-|ontology_enrichment_celltype=CL:0000055!1.87e-42!180;CL:0000057!3.28e-26!75;CL:0000183!4.29e-19!59;CL:0000680!1.47e-18!57;CL:0000056!1.47e-18!57;CL:0000355!1.47e-18!57;CL:0000187!9.64e-18!54;CL:0000393!2.92e-14!60;CL:0000211!2.92e-14!60;CL:0000048!1.88e-13!430;CL:0000192!7.17e-13!42;CL:0000514!7.17e-13!42;CL:0000723!1.57e-12!436;CL:0000034!2.31e-11!444;CL:0002620!1.27e-09!23;CL:0000359!2.28e-08!32;CL:0002494!4.05e-08!16;CL:0000327!7.80e-08!14;CL:0000499!1.08e-07!27;CL:0002334!1.45e-07!12;CL:0002371!2.24e-07!591;CL:0000222!3.13e-07!119;CL:0000144!3.39e-07!625|ontology_enrichment_celltype_v019=CL:0000057;1.18e-08;73!CL:0000499;1.50e-08;28!CL:0002320;1.81e-08;188!CL:0000134;1.10e-07;55!CL:0000327;1.82e-07;15!CL:0002620;4.90e-07;23!CL:0000048;5.95e-07;58!CL:0002570;8.75e-07;8|ontology_enrichment_celltype_v019_2=CL:0000057,4.01e-22,76;CL:0000048,4.59e-13,427;CL:0000723,1.90e-12,433;CL:0000034,1.17e-11,441;CL:0002320,1.02e-09,361;CL:0000134,4.78e-09,354;CL:0000499,9.78e-09,28;CL:0000327,1.35e-07,15;CL:0000219,1.98e-07,386;CL:0002620,3.61e-07,23;CL:0002570,9.52e-07,8|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001134!8.15e-19!61;UBERON:0002036!8.15e-19!61;UBERON:0003082!8.15e-19!61;UBERON:0002385!1.94e-18!63;UBERON:0001015!1.94e-18!63;UBERON:0000383!1.94e-18!63;UBERON:0000914!2.22e-18!83;UBERON:0002329!2.22e-18!83;UBERON:0003077!2.22e-18!83;UBERON:0003059!2.22e-18!83;UBERON:0007282!2.22e-18!83;UBERON:0009618!2.22e-18!83;UBERON:0007285!2.22e-18!83;UBERON:0004290!2.70e-17!70;UBERON:0000486!1.70e-13!82;UBERON:0005256!1.21e-09!143;UBERON:0001013!5.66e-08!14;UBERON:0000948!6.38e-07!24;UBERON:0005498!6.38e-07!24;UBERON:0004140!6.38e-07!24;UBERON:0009881!6.38e-07!24;UBERON:0004141!6.38e-07!24;UBERON:0003084!6.38e-07!24;UBERON:0007005!6.38e-07!24;UBERON:0004139!6.38e-07!24;UBERON:0004291!6.38e-07!24;UBERON:0004872!9.40e-07!84|ontology_enrichment_uberon_v019=UBERON:0003688;2.69e-08;6!UBERON:0002358;2.69e-08;6!UBERON:0003684;2.69e-08;6!UBERON:0001178;2.69e-08;6!UBERON:0002384;6.17e-08;198!UBERON:0001013;6.04e-07;14!UBERON:0003104;9.86e-07;7!UBERON:0009142;9.86e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.54e-10,371;UBERON:0003688,2.44e-08,6;UBERON:0002358,2.44e-08,6;UBERON:0003684,2.44e-08,6;UBERON:0001178,2.44e-08,6;UBERON:0001013,6.24e-07,14|phase1_expression=2.72517568905835,3.42560838225573,6.48390258841467,4.00293193412522,3.5756887554183,5.23403114460221,2.53299878168311,0.631719873426831,0.261185628199839,0,0,0.873765488520689,1.58260186937072,0.74259811776028,0.662794751455832,0.672325146451775,0,0.730310090387373,0.487932798790507,0.61560529038394,2.04000691244253,2.5076377718247,0,0.410623275218653,0.502170558379211,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.01210257911091,1.66221330396589,6.50590474292219,5.0133791063589,2.462390822334,5.5670016293577,7.78615792484217,0.567208902984407,1.99556457716308,0.351339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.4182426957736,2.27934920996244,0.397227542439656,6.88407889797153,1.77334191099179,1.12135520028461,5.33744978648525,3.20667812942308,0.622422070799533,0.808264032418128,0.163461903113459,3.93529311876822,3.45705554687999,0.234321431833797,0,0.570471821544449,0.448346041655403,0.117434498643765,0.161872944368132,0.140450806702248,0.204154171254893,0.245668634623536,0.826606249406124,15.4440371446667,7.41800787835671,5.46096817162816,4.31170885089743,0,1.12606667884768,0.554128230968366,1.75591048352335,2.75839016219118,6.00952235626387,1.13432183160021,2.69084453533293,3.63047560991565,2.96704661623387,3.60109315301283,1.54578793857658,2.31876486041066,2.60563598864226,5.73839529620305,2.04617710838517,1.00973509697646,2.57739716198438,1.61646056818812,3.55009592516614,1.5112814734146,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.118306800039844,0,0,0,0,0,0,0,0,0,0,4.5273141246454,16.1709582524096,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,0,0.939269553886573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,1.56983518083505,0.87192013766656,0.5867062865676,1.55126058909333,3.57656445851882,0.845302752556,1.32969058292435,2.08014873822732,0.514414748524284,0,0.532844358032199,3.14551586047925,9.76718889704597,2.46972101034231,1.62868092146868,1.42156779497018,0,0,0,0.099972991182057,0,0,0,2.63587341040741,11.4861935834114,1.42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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-382bp_to_ENST00000504289_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_52_at_COL1A1_5end | |||
|id=chr17:48270182..48270219,- | |||
|ontology_enrichment_celltype=CL:0000055!1.87e-42!180;CL:0000057!3.28e-26!75;CL:0000183!4.29e-19!59;CL:0000680!1.47e-18!57;CL:0000056!1.47e-18!57;CL:0000355!1.47e-18!57;CL:0000187!9.64e-18!54;CL:0000393!2.92e-14!60;CL:0000211!2.92e-14!60;CL:0000048!1.88e-13!430;CL:0000192!7.17e-13!42;CL:0000514!7.17e-13!42;CL:0000723!1.57e-12!436;CL:0000034!2.31e-11!444;CL:0002620!1.27e-09!23;CL:0000359!2.28e-08!32;CL:0002494!4.05e-08!16;CL:0000327!7.80e-08!14;CL:0000499!1.08e-07!27;CL:0002334!1.45e-07!12;CL:0002371!2.24e-07!591;CL:0000222!3.13e-07!119;CL:0000144!3.39e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000057;1.18e-08;73!CL:0000499;1.50e-08;28!CL:0002320;1.81e-08;188!CL:0000134;1.10e-07;55!CL:0000327;1.82e-07;15!CL:0002620;4.90e-07;23!CL:0000048;5.95e-07;58!CL:0002570;8.75e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.01e-22,76;CL:0000048,4.59e-13,427;CL:0000723,1.90e-12,433;CL:0000034,1.17e-11,441;CL:0002320,1.02e-09,361;CL:0000134,4.78e-09,354;CL:0000499,9.78e-09,28;CL:0000327,1.35e-07,15;CL:0000219,1.98e-07,386;CL:0002620,3.61e-07,23;CL:0002570,9.52e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!8.15e-19!61;UBERON:0002036!8.15e-19!61;UBERON:0003082!8.15e-19!61;UBERON:0002385!1.94e-18!63;UBERON:0001015!1.94e-18!63;UBERON:0000383!1.94e-18!63;UBERON:0000914!2.22e-18!83;UBERON:0002329!2.22e-18!83;UBERON:0003077!2.22e-18!83;UBERON:0003059!2.22e-18!83;UBERON:0007282!2.22e-18!83;UBERON:0009618!2.22e-18!83;UBERON:0007285!2.22e-18!83;UBERON:0004290!2.70e-17!70;UBERON:0000486!1.70e-13!82;UBERON:0005256!1.21e-09!143;UBERON:0001013!5.66e-08!14;UBERON:0000948!6.38e-07!24;UBERON:0005498!6.38e-07!24;UBERON:0004140!6.38e-07!24;UBERON:0009881!6.38e-07!24;UBERON:0004141!6.38e-07!24;UBERON:0003084!6.38e-07!24;UBERON:0007005!6.38e-07!24;UBERON:0004139!6.38e-07!24;UBERON:0004291!6.38e-07!24;UBERON:0004872!9.40e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.69e-08;6!UBERON:0002358;2.69e-08;6!UBERON:0003684;2.69e-08;6!UBERON:0001178;2.69e-08;6!UBERON:0002384;6.17e-08;198!UBERON:0001013;6.04e-07;14!UBERON:0003104;9.86e-07;7!UBERON:0009142;9.86e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.54e-10,371;UBERON:0003688,2.44e-08,6;UBERON:0002358,2.44e-08,6;UBERON:0003684,2.44e-08,6;UBERON:0001178,2.44e-08,6;UBERON:0001013,6.24e-07,14 | |||
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| |||
|short_description=p52@COL1A1 | |||
}} |
Revision as of 14:27, 11 September 2013
Short description: | p52@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_52_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -382bp_to_ENST00000504289_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.01e-22 | 76 |
multi fate stem cell | 4.59e-13 | 427 |
somatic stem cell | 1.90e-12 | 433 |
stem cell | 1.17e-11 | 441 |
connective tissue cell | 1.02e-09 | 361 |
mesenchymal cell | 4.78e-09 | 354 |
stromal cell | 9.78e-09 | 28 |
extracellular matrix secreting cell | 1.35e-07 | 15 |
motile cell | 1.98e-07 | 386 |
skin fibroblast | 3.61e-07 | 23 |
mesenchymal stem cell of adipose | 9.52e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.54e-10 | 371 |
omentum | 2.44e-08 | 6 |
peritoneum | 2.44e-08 | 6 |
abdominal cavity | 2.44e-08 | 6 |
visceral peritoneum | 2.44e-08 | 6 |
adipose tissue | 6.24e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.