FFCP PHASE1:Hg19::chr18:55713191..55713198,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3731|description=CAGE_peak_at_chr18:55713191..55713198,+|id=chr18:55713191..55713198,+|ontology_enrichment_celltype=CL:0000047!2.27e-10!8;CL:0002319!2.35e-09!25;CL:0000133!2.84e-07!59;CL:0002605!3.30e-07!3|ontology_enrichment_celltype_v019=CL:0000148;2.78e-13;10!CL:0000540;2.40e-10;6!CL:0000404;2.40e-10;6!CL:0000147;1.17e-09;14!CL:0002319;1.07e-08;25!CL:0000047;1.29e-08;2!CL:0000710;6.42e-07;20|ontology_enrichment_celltype_v019_2=CL:0000047,9.19e-17,8;CL:0000148,3.30e-13,10;CL:0000541,3.30e-13,10;CL:0000133,6.71e-11,59;CL:0000540,1.90e-10,6;CL:0000031,1.90e-10,6;CL:0000404,1.90e-10,6;CL:0000147,1.32e-09,14;CL:0000221,6.83e-09,72;CL:0002319,8.76e-09,25;CL:0000710,6.98e-07,20|ontology_enrichment_development_v019=CL:0000031;2.40e-10;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.27e-36!82;UBERON:0005743!5.00e-36!86;UBERON:0000073!4.79e-33!94;UBERON:0001016!4.79e-33!94;UBERON:0002780!3.61e-31!41;UBERON:0001890!3.61e-31!41;UBERON:0006240!3.61e-31!41;UBERON:0003080!3.03e-30!42;UBERON:0000955!2.58e-29!69;UBERON:0006238!2.58e-29!69;UBERON:0001049!2.96e-29!57;UBERON:0005068!2.96e-29!57;UBERON:0006241!2.96e-29!57;UBERON:0007135!2.96e-29!57;UBERON:0001893!9.56e-28!34;UBERON:0000956!2.89e-27!25;UBERON:0000203!2.89e-27!25;UBERON:0001869!3.29e-27!32;UBERON:0002791!3.36e-26!33;UBERON:0002616!4.37e-26!59;UBERON:0002020!4.16e-25!34;UBERON:0003528!4.16e-25!34;UBERON:0002619!4.20e-22!22;UBERON:0003056!9.67e-22!61;UBERON:0001950!1.29e-21!20;UBERON:0003075!2.52e-20!86;UBERON:0007284!2.52e-20!86;UBERON:0002346!5.52e-19!90;UBERON:0004121!1.32e-16!169;UBERON:0000924!6.33e-16!173;UBERON:0006601!6.33e-16!173;UBERON:0007023!1.18e-15!115;UBERON:0000033!3.92e-15!123;UBERON:0000153!5.96e-14!129;UBERON:0007811!5.96e-14!129;UBERON:0001871!5.10e-09!7;UBERON:0000025!2.12e-08!194;UBERON:0000200!2.93e-08!6;UBERON:0001872!3.29e-07!5;UBERON:0002021!7.24e-07!5|ontology_enrichment_uberon_v019=UBERON:0001905;2.31e-08;2!UBERON:0002757;2.31e-08;2!UBERON:0010134;2.31e-08;2!UBERON:0005408;2.31e-08;2!UBERON:0001899;2.31e-08;2!UBERON:0000922;8.87e-08;49!UBERON:0001950;8.51e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.30e-10,81;UBERON:0001016,2.82e-09,89;UBERON:0001905,2.15e-08,2;UBERON:0002757,2.15e-08,2;UBERON:0010134,2.15e-08,2;UBERON:0005408,2.15e-08,2;UBERON:0001899,2.15e-08,2;UBERON:0001950,8.77e-07,20|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.547497700291537,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.698476837213859,0.763976851116555,1.17217447210047,0,0,1.20137223137567,1.14330573052231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,3.90419561572865,0.773288812777695,1.84267891867784,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0.211125408127993,0,0,0,0.409074730008619,0,0,0.0898683511473268,0,0,0,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.498635045700469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0.234264445725339,0,0,0,0,0,3.0607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0.788662062837943,0,0,0,0,0,0,0.0671834724867263,0,0,0.630265458457789,0.576911008668165,0.471824806979294,0,0,0,0.408610218334727,0,0.825236619583403,0,0,0,0.242998226632099,0,0.315222829196793,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0.213574825135389,1.10043013569766,0.414239055347196,0,0,0.121792598380896,0,0,0.5013797880454,0.306345576763462,0,0,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,1.93688088910723,0,0,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,2.52071696221718,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.620060389503552,0.19024743058172,3.28184885410932,0,0,0,0,1.60710550763486,0,0.606965604236632,0,0,0,0,0.203909198930495,0.263091094251396,0.118193840883968,0.111231401892069,0,0.157115589916002,0,0,0,0,1.1436247068265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.329821550236287,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0.339957450954573,2.61810414204226,0.5290268405154,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0|short_description=p@chr18:55713191..55713198,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3731 | |||
|description=CAGE_peak_at_chr18:55713191..55713198,+ | |||
|id=chr18:55713191..55713198,+ | |||
|ontology_enrichment_celltype=CL:0000047!2.27e-10!8;CL:0002319!2.35e-09!25;CL:0000133!2.84e-07!59;CL:0002605!3.30e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.78e-13;10!CL:0000540;2.40e-10;6!CL:0000404;2.40e-10;6!CL:0000147;1.17e-09;14!CL:0002319;1.07e-08;25!CL:0000047;1.29e-08;2!CL:0000710;6.42e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,9.19e-17,8;CL:0000148,3.30e-13,10;CL:0000541,3.30e-13,10;CL:0000133,6.71e-11,59;CL:0000540,1.90e-10,6;CL:0000031,1.90e-10,6;CL:0000404,1.90e-10,6;CL:0000147,1.32e-09,14;CL:0000221,6.83e-09,72;CL:0002319,8.76e-09,25;CL:0000710,6.98e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000031;2.40e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.27e-36!82;UBERON:0005743!5.00e-36!86;UBERON:0000073!4.79e-33!94;UBERON:0001016!4.79e-33!94;UBERON:0002780!3.61e-31!41;UBERON:0001890!3.61e-31!41;UBERON:0006240!3.61e-31!41;UBERON:0003080!3.03e-30!42;UBERON:0000955!2.58e-29!69;UBERON:0006238!2.58e-29!69;UBERON:0001049!2.96e-29!57;UBERON:0005068!2.96e-29!57;UBERON:0006241!2.96e-29!57;UBERON:0007135!2.96e-29!57;UBERON:0001893!9.56e-28!34;UBERON:0000956!2.89e-27!25;UBERON:0000203!2.89e-27!25;UBERON:0001869!3.29e-27!32;UBERON:0002791!3.36e-26!33;UBERON:0002616!4.37e-26!59;UBERON:0002020!4.16e-25!34;UBERON:0003528!4.16e-25!34;UBERON:0002619!4.20e-22!22;UBERON:0003056!9.67e-22!61;UBERON:0001950!1.29e-21!20;UBERON:0003075!2.52e-20!86;UBERON:0007284!2.52e-20!86;UBERON:0002346!5.52e-19!90;UBERON:0004121!1.32e-16!169;UBERON:0000924!6.33e-16!173;UBERON:0006601!6.33e-16!173;UBERON:0007023!1.18e-15!115;UBERON:0000033!3.92e-15!123;UBERON:0000153!5.96e-14!129;UBERON:0007811!5.96e-14!129;UBERON:0001871!5.10e-09!7;UBERON:0000025!2.12e-08!194;UBERON:0000200!2.93e-08!6;UBERON:0001872!3.29e-07!5;UBERON:0002021!7.24e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.31e-08;2!UBERON:0002757;2.31e-08;2!UBERON:0010134;2.31e-08;2!UBERON:0005408;2.31e-08;2!UBERON:0001899;2.31e-08;2!UBERON:0000922;8.87e-08;49!UBERON:0001950;8.51e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.30e-10,81;UBERON:0001016,2.82e-09,89;UBERON:0001905,2.15e-08,2;UBERON:0002757,2.15e-08,2;UBERON:0010134,2.15e-08,2;UBERON:0005408,2.15e-08,2;UBERON:0001899,2.15e-08,2;UBERON:0001950,8.77e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.547497700291537,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.698476837213859,0.763976851116555,1.17217447210047,0,0,1.20137223137567,1.14330573052231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,3.90419561572865,0.773288812777695,1.84267891867784,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0.211125408127993,0,0,0,0.409074730008619,0,0,0.0898683511473268,0,0,0,0,0,0.969332746095218,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.498635045700469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0.234264445725339,0,0,0,0,0,3.0607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0.788662062837943,0,0,0,0,0,0,0.0671834724867263,0,0,0.630265458457789,0.576911008668165,0.471824806979294,0,0,0,0.408610218334727,0,0.825236619583403,0,0,0,0.242998226632099,0,0.315222829196793,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0.213574825135389,1.10043013569766,0.414239055347196,0,0,0.121792598380896,0,0,0.5013797880454,0.306345576763462,0,0,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,1.93688088910723,0,0,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,2.52071696221718,0.276629009856872,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.620060389503552,0.19024743058172,3.28184885410932,0,0,0,0,1.60710550763486,0,0.606965604236632,0,0,0,0,0.203909198930495,0.263091094251396,0.118193840883968,0.111231401892069,0,0.157115589916002,0,0,0,0,1.1436247068265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.329821550236287,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0.339957450954573,2.61810414204226,0.5290268405154,0,0,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:55713191..55713198,+ | |||
}} |
Revision as of 17:50, 11 September 2013
Short description: | p@chr18:55713191..55713198, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:55713191..55713198, + |
Coexpression cluster: | C3731_temporal_Neural_parietal_Melanocyte_duodenum_occipital_Neurons |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 9.19e-17 | 8 |
melanocyte | 3.30e-13 | 10 |
melanoblast | 3.30e-13 | 10 |
neurectodermal cell | 6.71e-11 | 59 |
neuron | 1.90e-10 | 6 |
neuroblast | 1.90e-10 | 6 |
electrically signaling cell | 1.90e-10 | 6 |
pigment cell | 1.32e-09 | 14 |
ectodermal cell | 6.83e-09 | 72 |
neural cell | 8.76e-09 | 25 |
neurecto-epithelial cell | 6.98e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.30e-10 | 81 |
nervous system | 2.82e-09 | 89 |
pineal body | 2.15e-08 | 2 |
regional part of epithalamus | 2.15e-08 | 2 |
secretory circumventricular organ | 2.15e-08 | 2 |
circumventricular organ | 2.15e-08 | 2 |
epithalamus | 2.15e-08 | 2 |
neocortex | 8.77e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.