FFCP PHASE1:Hg19::chr19:49122427..49122447,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6141|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10310|TSSclassifier=S|UniProt=E7EW92,G3V203,F8VXR6,F8VWC5,Q07020|association_with_transcript=0bp_to_ENST00000450952,ENST00000547892,ENST00000549273,ENST00000549370,ENST00000550671,ENST00000551749,ENST00000552588,ENST00000552705,NM_000979,uc002pjq.1,uc010xzs.1_5end|coexpression_cluster_id=C884|description=CAGE_peak_1_at_RPL18_5end|id=chr19:49122427..49122447,-|ontology_enrichment_celltype=CL:0000003!8.46e-27!722;CL:0000144!3.58e-25!625;CL:0000012!3.73e-25!682;CL:0002371!1.41e-23!591;CL:0000548!2.45e-23!679;CL:0000004!2.45e-23!679;CL:0000255!2.45e-23!679;CL:0000183!1.40e-12!59;CL:0000187!3.33e-10!54;CL:0000393!1.21e-09!60;CL:0000211!1.21e-09!60;CL:0000680!1.75e-09!57;CL:0000056!1.75e-09!57;CL:0000355!1.75e-09!57;CL:0000034!2.10e-09!444;CL:0000192!4.14e-09!42;CL:0000514!4.14e-09!42;CL:0000063!5.19e-09!578;CL:0000723!1.04e-08!436;CL:0000048!1.61e-08!430;CL:0000222!1.88e-08!119;CL:0000838!3.65e-08!52;CL:0000542!5.86e-08!53;CL:0000051!5.86e-08!53;CL:0000359!2.16e-07!32|ontology_enrichment_celltype_v019=CL:0000359;8.22e-07;32|ontology_enrichment_celltype_v019_2=CL:0000187,8.00e-10,55;CL:0000034,2.52e-09,441;CL:0000393,2.64e-09,61;CL:0000211,2.64e-09,61;CL:0000680,3.89e-09,58;CL:0000056,3.89e-09,58;CL:0000355,3.89e-09,58;CL:0000192,1.07e-08,43;CL:0000514,1.07e-08,43;CL:0000723,1.23e-08,433;CL:0000222,1.50e-08,121;CL:0000048,1.91e-08,427;CL:0000838,3.65e-08,52;CL:0000542,5.86e-08,53;CL:0000051,5.86e-08,53;CL:0000359,2.16e-07,32|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004290!3.24e-10!70;UBERON:0000486!1.91e-09!82;UBERON:0002049!1.10e-08!79;UBERON:0007798!1.10e-08!79;UBERON:0000914!1.60e-08!83;UBERON:0002329!1.60e-08!83;UBERON:0003077!1.60e-08!83;UBERON:0003059!1.60e-08!83;UBERON:0007282!1.60e-08!83;UBERON:0009618!1.60e-08!83;UBERON:0007285!1.60e-08!83;UBERON:0001134!2.35e-08!61;UBERON:0002036!2.35e-08!61;UBERON:0003082!2.35e-08!61;UBERON:0000055!7.29e-08!69;UBERON:0002385!1.86e-07!63;UBERON:0001015!1.86e-07!63;UBERON:0000383!1.86e-07!63;UBERON:0001981!1.99e-07!60;UBERON:0007500!1.99e-07!60;UBERON:0004537!1.99e-07!60;UBERON:0006965!1.99e-07!60;UBERON:0001637!3.69e-07!42;UBERON:0003509!3.69e-07!42;UBERON:0004572!3.69e-07!42;UBERON:0004872!4.55e-07!84;UBERON:0000490!6.40e-07!138;UBERON:0004535!8.52e-07!110|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.75e-12,78;UBERON:0002329,6.78e-10,71;UBERON:0003059,6.78e-10,71;UBERON:0007282,6.78e-10,71;UBERON:0004290,6.78e-10,71;UBERON:0009618,6.78e-10,71;UBERON:0003077,2.84e-09,72;UBERON:0007285,2.84e-09,72;UBERON:0007524,3.07e-09,73;UBERON:0000486,3.56e-09,83;UBERON:0002049,5.19e-09,78;UBERON:0007798,5.19e-09,78;UBERON:0000490,3.12e-08,148;UBERON:0000055,3.41e-08,68;UBERON:0001134,4.69e-08,62;UBERON:0002036,4.69e-08,62;UBERON:0003082,4.69e-08,62;UBERON:0007500,8.99e-08,59;UBERON:0001981,8.99e-08,59;UBERON:0004537,8.99e-08,59;UBERON:0006965,8.99e-08,59;UBERON:0004872,2.44e-07,83;UBERON:0002385,3.45e-07,64;UBERON:0001015,3.45e-07,64;UBERON:0000383,3.45e-07,64;UBERON:0001637,3.69e-07,42;UBERON:0003509,3.69e-07,42;UBERON:0004572,3.69e-07,42;UBERON:0004535,5.10e-07,109|phase1_expression=256.348193150755,225.661952181096,202.692433090007,386.282931643083,456.794238504688,430.935230905582,808.026611356911,610.241397730319,1106.38232105452,614.334841253772,1989.43112988939,555.496409327028,687.640512241578,654.971539864567,707.5333971791,697.201176870491,647.293923097751,703.28861704304,562.098584206664,820.355609965638,1173.41197603694,1148.49809949571,546.138263446056,359.842863516613,367.588848733583,354.940269699234,310.340228120795,311.222429314288,274.961629517384,218.782756915411,587.836820231141,746.570034276889,804.219803137928,780.180961451922,795.123346756216,495.886282916126,840.871658255002,354.557061460402,257.900159446602,299.25799071716,251.680993045675,134.415871397877,188.030164372956,320.166921792601,375.608688026677,264.659210755907,361.194723351434,372.106938659752,335.411999679397,423.770893890528,459.808468219736,448.843272328535,337.50602144115,307.250709385901,383.256957061987,362.366503619514,418.365128038678,390.569415965557,419.334932548137,371.31488432704,384.880949731023,323.254274182982,411.493525673427,284.291908605307,400.488749307446,434.049696888722,312.656768995779,336.673211444036,396.848500917773,424.169813709093,319.650937390419,461.083600256431,431.338234081926,435.397145088912,549.156906809707,626.04071548801,493.684333888846,493.48126987719,258.928920168996,506.75265837194,598.341365014863,492.279894395688,540.308470496261,678.304155187567,613.761385165853,681.488165438712,720.712776664822,658.091543747883,750.285930610818,833.842981463908,577.181950676981,661.816312421048,617.75353665037,926.521013338971,703.998755104809,982.422636211037,630.848232755063,492.83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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6141 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10310 | |||
|TSSclassifier=S | |||
|UniProt=E7EW92,G3V203,F8VXR6,F8VWC5,Q07020 | |||
|association_with_transcript=0bp_to_ENST00000450952,ENST00000547892,ENST00000549273,ENST00000549370,ENST00000550671,ENST00000551749,ENST00000552588,ENST00000552705,NM_000979,uc002pjq.1,uc010xzs.1_5end | |||
|coexpression_cluster_id=C884 | |||
|description=CAGE_peak_1_at_RPL18_5end | |||
|id=chr19:49122427..49122447,- | |||
|ontology_enrichment_celltype=CL:0000003!8.46e-27!722;CL:0000144!3.58e-25!625;CL:0000012!3.73e-25!682;CL:0002371!1.41e-23!591;CL:0000548!2.45e-23!679;CL:0000004!2.45e-23!679;CL:0000255!2.45e-23!679;CL:0000183!1.40e-12!59;CL:0000187!3.33e-10!54;CL:0000393!1.21e-09!60;CL:0000211!1.21e-09!60;CL:0000680!1.75e-09!57;CL:0000056!1.75e-09!57;CL:0000355!1.75e-09!57;CL:0000034!2.10e-09!444;CL:0000192!4.14e-09!42;CL:0000514!4.14e-09!42;CL:0000063!5.19e-09!578;CL:0000723!1.04e-08!436;CL:0000048!1.61e-08!430;CL:0000222!1.88e-08!119;CL:0000838!3.65e-08!52;CL:0000542!5.86e-08!53;CL:0000051!5.86e-08!53;CL:0000359!2.16e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.22e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,8.00e-10,55;CL:0000034,2.52e-09,441;CL:0000393,2.64e-09,61;CL:0000211,2.64e-09,61;CL:0000680,3.89e-09,58;CL:0000056,3.89e-09,58;CL:0000355,3.89e-09,58;CL:0000192,1.07e-08,43;CL:0000514,1.07e-08,43;CL:0000723,1.23e-08,433;CL:0000222,1.50e-08,121;CL:0000048,1.91e-08,427;CL:0000838,3.65e-08,52;CL:0000542,5.86e-08,53;CL:0000051,5.86e-08,53;CL:0000359,2.16e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019= | |||
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| |||
|short_description=p1@RPL18 | |||
}} |
Revision as of 21:38, 11 September 2013
Short description: | p1@RPL18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RPL18_5end |
Coexpression cluster: | C884_Mesenchymal_Alveolar_Smooth_Renal_Pericytes_Fibroblast_Hepatic |
Association with transcript: | 0bp_to_ENST00000450952, ENST00000547892, ENST00000549273, ENST00000549370, ENST00000550671, ENST00000551749, ENST00000552588, ENST00000552705, NM_000979, uc002pjq.1, uc010xzs.1_5end |
EntrezGene: | RPL18 |
HGNC: | 10310 |
UniProt: | E7EW92G3V203F8VXR6F8VWC5Q07020 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 8.00e-10 | 55 |
stem cell | 2.52e-09 | 441 |
electrically responsive cell | 2.64e-09 | 61 |
electrically active cell | 2.64e-09 | 61 |
muscle precursor cell | 3.89e-09 | 58 |
myoblast | 3.89e-09 | 58 |
multi-potent skeletal muscle stem cell | 3.89e-09 | 58 |
smooth muscle cell | 1.07e-08 | 43 |
smooth muscle myoblast | 1.07e-08 | 43 |
somatic stem cell | 1.23e-08 | 433 |
mesodermal cell | 1.50e-08 | 121 |
multi fate stem cell | 1.91e-08 | 427 |
lymphoid lineage restricted progenitor cell | 3.65e-08 | 52 |
lymphocyte | 5.86e-08 | 53 |
common lymphoid progenitor | 5.86e-08 | 53 |
vascular associated smooth muscle cell | 2.16e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.75e-12 | 78 |
somite | 6.78e-10 | 71 |
presomitic mesoderm | 6.78e-10 | 71 |
presumptive segmental plate | 6.78e-10 | 71 |
dermomyotome | 6.78e-10 | 71 |
trunk paraxial mesoderm | 6.78e-10 | 71 |
paraxial mesoderm | 2.84e-09 | 72 |
presumptive paraxial mesoderm | 2.84e-09 | 72 |
dense mesenchyme tissue | 3.07e-09 | 73 |
multilaminar epithelium | 3.56e-09 | 83 |
vasculature | 5.19e-09 | 78 |
vascular system | 5.19e-09 | 78 |
unilaminar epithelium | 3.12e-08 | 148 |
vessel | 3.41e-08 | 68 |
skeletal muscle tissue | 4.69e-08 | 62 |
striated muscle tissue | 4.69e-08 | 62 |
myotome | 4.69e-08 | 62 |
epithelial tube open at both ends | 8.99e-08 | 59 |
blood vessel | 8.99e-08 | 59 |
blood vasculature | 8.99e-08 | 59 |
vascular cord | 8.99e-08 | 59 |
splanchnic layer of lateral plate mesoderm | 2.44e-07 | 83 |
muscle tissue | 3.45e-07 | 64 |
musculature | 3.45e-07 | 64 |
musculature of body | 3.45e-07 | 64 |
artery | 3.69e-07 | 42 |
arterial blood vessel | 3.69e-07 | 42 |
arterial system | 3.69e-07 | 42 |
cardiovascular system | 5.10e-07 | 109 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.