FFCP PHASE1:Hg19::chr2:177001268..177001287,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3232|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5137|TSSclassifier=S|UniProt=|association_with_transcript=-52bp_to_ENST00000459979,uc002ukr.2_5end|description=CAGE_peak_3_at_HOXD3_5end|id=chr2:177001268..177001287,+|ontology_enrichment_celltype=CL:0002620!1.36e-07!23|ontology_enrichment_celltype_v019=CL:0002618;8.94e-09;3|ontology_enrichment_celltype_v019_2=CL:0002618,1.49e-08,3|ontology_enrichment_development_v019=UBERON:0006241;7.11e-09;3!UBERON:0003057;7.11e-09;3!UBERON:0007297;3.70e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000059!1.04e-08!11;UBERON:0005156!3.61e-08!59;UBERON:0000990!3.61e-08!59;UBERON:0000489!2.23e-07!32;UBERON:0003133!2.53e-07!48;UBERON:0001155!3.12e-07!9;UBERON:0002097!6.22e-07!40;UBERON:0003064!8.28e-07!37|ontology_enrichment_uberon_v019=UBERON:0005904;3.20e-12;4!UBERON:0006947;5.36e-10;3!UBERON:0004054;5.36e-10;3!UBERON:0002240;7.11e-09;3!UBERON:0005174;7.11e-09;3!UBERON:0001137;7.11e-09;3!UBERON:0004175;2.46e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0005904,2.60e-12,4;UBERON:0006947,5.77e-10,3;UBERON:0004054,5.77e-10,3;UBERON:0002240,4.06e-09,3;UBERON:0005174,4.06e-09,3;UBERON:0001137,4.06e-09,3;UBERON:0004876,1.15e-08,11;UBERON:0000080,1.07e-07,9;UBERON:0002120,1.07e-07,9;UBERON:0004875,1.07e-07,9;UBERON:0005721,1.07e-07,9;UBERON:0005754,1.07e-07,9;UBERON:0007297,1.07e-07,9|phase1_expression=0.908391896352783,0.642301571672949,0.140954404095971,0,0,0.872338524100369,0,1.89515962028049,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,0.289693037921647,0,0.486634870302636,0,0,0,1.17881167947941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,1.8089173141853,2.13459757612026,0.66944122552934,0.402829317109147,0,0.24406205754817,0.367663080345869,0,2.14319347881791,1.57170560838319,1.0135033243499,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0.822041490506354,0.647491777472526,1.12360645361799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61450672119976,0.427114777637135,0,0.900273288253207,0.309157587715317,3.60696756063881,0.37223371266318,1.35021065793013,0.584622030967192,1.00973509697646,0.552299391853796,0,1.77504796258307,1.0075209822764,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,1.38134921352481,0,0,0.236613600079688,0,0,0.441175890929576,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0.577465791044295,0.925971025153221,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.380987365753014,1.14596527667483,2.34434894420094,0,0.411309970813294,0.901029173531752,0.857479297891735,0,0,0,0.129271715757778,0,0,0.797814349754612,1.04007436911366,0.257207374262142,0,0.532844358032199,0,0,1.64648067356154,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.601892199455438,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.992431231275107,0.460385919864187,0.561320188866147,0.256278298511402,0.511707249066704,0,0,0,0,0,0,0.116210378459959,1.20859449591622,0.40101294060657,0.184161977871793,0,0,0.262248829918848,0.902399225814824,0.231046011313244,0,0,0.211103257785751,1.13733384070897,1.70093705276516,0.215915916102139,0,0.541892875087706,2.00675909541941,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0.618246069886334,0.183138929636687,0.165018999841176,0.574265537996172,0,1.6068392984416,0.193341436584244,0.308097234229289,0.307007349452259,0.551346289938122,0.966782203814463,0.435050081742686,0.426133137080504,0.267096106940212,0,0,0,0,0,0,0,0.924100740528266,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.823611089208164,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,1.68886108238131,0.329294892959902,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0,0,0,0,2.39097585901284,0.828851746593443,0,0.102268682502155,0,0,0,0,0,0.789147245095469,0,0,0,0,0,0,0,3.62499787717397,0,0,1.18193840883968,0.344743373241465,1.74962768029953,1.04174996959975,0,0,0,0,0,0,0,0.139423744278603,1.61595542857974,0,0,0,1.19512109114209,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0.816164040795739,0.141353071433941,8.22276831019946,11.9431431729421,1.76915129006678,8.55442202907076,0,0,0,0,1.60515529459758,0,0,0,0,8.2862724598372,0,0,0.252746318513952,0.150323419414493,0.72581733978073,0,0,0,0,0.569219092059585,1.10939738410511,0.520679215005393,0,0.0870592065804026,4.36816670605075,0.343972064943233,0,0,0,0.290967049465258,1.588610280447,0.225980740780532,0,0,0,1.17330829640882,0,0.213452994739353,0,0.4322712514623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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3232 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5137 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-52bp_to_ENST00000459979,uc002ukr.2_5end | |||
|description=CAGE_peak_3_at_HOXD3_5end | |||
|id=chr2:177001268..177001287,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.36e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002618;8.94e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,1.49e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;7.11e-09;3!UBERON:0003057;7.11e-09;3!UBERON:0007297;3.70e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000059!1.04e-08!11;UBERON:0005156!3.61e-08!59;UBERON:0000990!3.61e-08!59;UBERON:0000489!2.23e-07!32;UBERON:0003133!2.53e-07!48;UBERON:0001155!3.12e-07!9;UBERON:0002097!6.22e-07!40;UBERON:0003064!8.28e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0005904;3.20e-12;4!UBERON:0006947;5.36e-10;3!UBERON:0004054;5.36e-10;3!UBERON:0002240;7.11e-09;3!UBERON:0005174;7.11e-09;3!UBERON:0001137;7.11e-09;3!UBERON:0004175;2.46e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005904,2.60e-12,4;UBERON:0006947,5.77e-10,3;UBERON:0004054,5.77e-10,3;UBERON:0002240,4.06e-09,3;UBERON:0005174,4.06e-09,3;UBERON:0001137,4.06e-09,3;UBERON:0004876,1.15e-08,11;UBERON:0000080,1.07e-07,9;UBERON:0002120,1.07e-07,9;UBERON:0004875,1.07e-07,9;UBERON:0005721,1.07e-07,9;UBERON:0005754,1.07e-07,9;UBERON:0007297,1.07e-07,9 | |||
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| |||
|short_description=p3@HOXD3 | |||
}} |
Revision as of 14:50, 12 September 2013
Short description: | p3@HOXD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -52bp_to_ENST00000459979, uc002ukr.2_5end |
EntrezGene: | HOXD3 |
HGNC: | 5137 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 1.49e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
duct of male reproductive system | 2.60e-12 | 4 |
male genital duct | 5.77e-10 | 3 |
internal male genitalia | 5.77e-10 | 3 |
spinal cord | 4.06e-09 | 3 |
dorsal region element | 4.06e-09 | 3 |
dorsum | 4.06e-09 | 3 |
urogenital ridge | 1.15e-08 | 11 |
mesonephros | 1.07e-07 | 9 |
pronephros | 1.07e-07 | 9 |
nephrogenic cord | 1.07e-07 | 9 |
pronephric mesoderm | 1.07e-07 | 9 |
rostral part of nephrogenic cord | 1.07e-07 | 9 |
presumptive pronephric mesoderm | 1.07e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.