FFCP PHASE1:Hg19::chr20:48099013..48099034,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3745|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6231|TSSclassifier=S|UniProt=Q14721|association_with_transcript=146bp_to_NM_004975_5end|coexpression_cluster_id=C73|description=CAGE_peak_5_at_KCNB1_5end|id=chr20:48099013..48099034,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;9.46e-18;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002780!4.02e-52!41;UBERON:0001890!4.02e-52!41;UBERON:0006240!4.02e-52!41;UBERON:0002791!4.03e-52!33;UBERON:0000955!7.48e-51!69;UBERON:0006238!7.48e-51!69;UBERON:0003080!8.20e-51!42;UBERON:0002020!1.29e-50!34;UBERON:0003528!1.29e-50!34;UBERON:0001893!1.59e-50!34;UBERON:0001869!5.22e-48!32;UBERON:0002619!1.74e-47!22;UBERON:0005743!3.41e-47!86;UBERON:0001017!8.42e-46!82;UBERON:0001950!4.54e-45!20;UBERON:0001049!1.48e-44!57;UBERON:0005068!1.48e-44!57;UBERON:0006241!1.48e-44!57;UBERON:0007135!1.48e-44!57;UBERON:0002616!6.39e-43!59;UBERON:0000073!2.55e-42!94;UBERON:0001016!2.55e-42!94;UBERON:0003056!1.02e-41!61;UBERON:0000956!1.11e-41!25;UBERON:0000203!1.11e-41!25;UBERON:0007023!1.01e-37!115;UBERON:0003075!2.18e-37!86;UBERON:0007284!2.18e-37!86;UBERON:0002346!1.59e-35!90;UBERON:0000033!1.14e-31!123;UBERON:0000153!5.70e-30!129;UBERON:0007811!5.70e-30!129;UBERON:0004121!1.67e-21!169;UBERON:0000924!6.87e-21!173;UBERON:0006601!6.87e-21!173;UBERON:0002771!1.56e-18!3;UBERON:0001871!2.93e-18!7;UBERON:0000200!3.56e-16!6;UBERON:0000369!9.02e-14!4;UBERON:0002435!9.02e-14!4;UBERON:0000204!9.02e-14!4;UBERON:0010082!9.02e-14!4;UBERON:0001905!9.52e-14!2;UBERON:0002757!9.52e-14!2;UBERON:0010134!9.52e-14!2;UBERON:0002784!9.52e-14!2;UBERON:0005408!9.52e-14!2;UBERON:0001899!9.52e-14!2;UBERON:0002021!1.67e-11!5;UBERON:0001872!1.85e-11!5;UBERON:0000349!3.38e-11!5;UBERON:0002420!1.37e-10!9;UBERON:0007245!1.37e-10!9;UBERON:0010009!1.37e-10!9;UBERON:0010011!1.37e-10!9;UBERON:0000454!1.37e-10!9;UBERON:0002308!1.52e-10!9;UBERON:0000125!1.52e-10!9;UBERON:0000025!4.82e-10!194;UBERON:0005383!1.39e-08!3;UBERON:0005382!1.39e-08!3;UBERON:0000988!1.82e-08!3;UBERON:0004111!3.75e-08!241;UBERON:0009663!4.44e-08!7;UBERON:0000475!5.70e-08!365;UBERON:0001000!1.74e-07!1;UBERON:0005352!1.74e-07!1;UBERON:0001882!1.85e-07!1;UBERON:0005403!1.85e-07!1;UBERON:0003112!1.97e-07!1;UBERON:0000032!1.97e-07!1;UBERON:0005253!1.97e-07!1;UBERON:0003128!1.97e-07!1;UBERON:0002241!1.97e-07!1;UBERON:0001703!1.97e-07!1;UBERON:0004761!1.97e-07!1;UBERON:0009617!1.97e-07!1;UBERON:0000064!2.01e-07!219;UBERON:0002902!2.09e-07!1;UBERON:0009899!2.09e-07!1;UBERON:0002581!2.37e-07!1;UBERON:0002022!2.67e-07!1;UBERON:0003296!2.76e-07!4;UBERON:0010133!2.76e-07!4;UBERON:0001874!3.62e-07!1;UBERON:0006834!5.84e-07!1;UBERON:0000477!6.00e-07!286;UBERON:0002336!7.40e-07!1;UBERON:0001018!7.40e-07!1;UBERON:0002473!7.40e-07!1;UBERON:0005340!7.40e-07!1;UBERON:0002316!7.40e-07!1;UBERON:0003544!7.40e-07!1;UBERON:0001020!7.40e-07!1;UBERON:0005970!7.40e-07!1;UBERON:0002437!7.40e-07!1;UBERON:0000483!7.70e-07!309;UBERON:0000119!1.00e-06!312|ontology_enrichment_uberon_v019=UBERON:0001905;5.68e-99;2!UBERON:0002757;5.68e-99;2!UBERON:0010134;5.68e-99;2!UBERON:0005408;5.68e-99;2!UBERON:0001899;5.68e-99;2!UBERON:0003296;3.11e-50;4!UBERON:0010133;3.11e-50;4!UBERON:0002784;3.11e-50;4!UBERON:0001894;2.74e-29;7!UBERON:0000966;3.26e-11;5!UBERON:0005388;3.26e-11;5!UBERON:0001802;3.26e-11;5!UBERON:0000970;6.30e-11;20!UBERON:0002104;1.86e-10;21!UBERON:0000020;1.22e-09;23!UBERON:0001032;2.78e-09;24!UBERON:0004456;2.78e-09;24|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.68e-99,2;UBERON:0002757,5.68e-99,2;UBERON:0010134,5.68e-99,2;UBERON:0005408,5.68e-99,2;UBERON:0001899,5.68e-99,2;UBERON:0003296,3.11e-50,4;UBERON:0010133,3.11e-50,4;UBERON:0002784,3.11e-50,4;UBERON:0001894,2.74e-29,7;UBERON:0006222,2.74e-29,7;UBERON:0000970,1.86e-10,21;UBERON:0002104,1.86e-10,21;UBERON:0000966,1.44e-09,6;UBERON:0005388,1.44e-09,6;UBERON:0001802,1.44e-09,6;UBERON:0000020,2.78e-09,24;UBERON:0001032,2.78e-09,24;UBERON:0004456,2.78e-09,24;UBERON:0003056,4.28e-08,61;UBERON:0002368,9.98e-07,35|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6231 | |||
|TSSclassifier=S | |||
|UniProt=Q14721 | |||
|association_with_transcript=146bp_to_NM_004975_5end | |||
|coexpression_cluster_id=C73 | |||
|description=CAGE_peak_5_at_KCNB1_5end | |||
|id=chr20:48099013..48099034,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;9.46e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!4.02e-52!41;UBERON:0001890!4.02e-52!41;UBERON:0006240!4.02e-52!41;UBERON:0002791!4.03e-52!33;UBERON:0000955!7.48e-51!69;UBERON:0006238!7.48e-51!69;UBERON:0003080!8.20e-51!42;UBERON:0002020!1.29e-50!34;UBERON:0003528!1.29e-50!34;UBERON:0001893!1.59e-50!34;UBERON:0001869!5.22e-48!32;UBERON:0002619!1.74e-47!22;UBERON:0005743!3.41e-47!86;UBERON:0001017!8.42e-46!82;UBERON:0001950!4.54e-45!20;UBERON:0001049!1.48e-44!57;UBERON:0005068!1.48e-44!57;UBERON:0006241!1.48e-44!57;UBERON:0007135!1.48e-44!57;UBERON:0002616!6.39e-43!59;UBERON:0000073!2.55e-42!94;UBERON:0001016!2.55e-42!94;UBERON:0003056!1.02e-41!61;UBERON:0000956!1.11e-41!25;UBERON:0000203!1.11e-41!25;UBERON:0007023!1.01e-37!115;UBERON:0003075!2.18e-37!86;UBERON:0007284!2.18e-37!86;UBERON:0002346!1.59e-35!90;UBERON:0000033!1.14e-31!123;UBERON:0000153!5.70e-30!129;UBERON:0007811!5.70e-30!129;UBERON:0004121!1.67e-21!169;UBERON:0000924!6.87e-21!173;UBERON:0006601!6.87e-21!173;UBERON:0002771!1.56e-18!3;UBERON:0001871!2.93e-18!7;UBERON:0000200!3.56e-16!6;UBERON:0000369!9.02e-14!4;UBERON:0002435!9.02e-14!4;UBERON:0000204!9.02e-14!4;UBERON:0010082!9.02e-14!4;UBERON:0001905!9.52e-14!2;UBERON:0002757!9.52e-14!2;UBERON:0010134!9.52e-14!2;UBERON:0002784!9.52e-14!2;UBERON:0005408!9.52e-14!2;UBERON:0001899!9.52e-14!2;UBERON:0002021!1.67e-11!5;UBERON:0001872!1.85e-11!5;UBERON:0000349!3.38e-11!5;UBERON:0002420!1.37e-10!9;UBERON:0007245!1.37e-10!9;UBERON:0010009!1.37e-10!9;UBERON:0010011!1.37e-10!9;UBERON:0000454!1.37e-10!9;UBERON:0002308!1.52e-10!9;UBERON:0000125!1.52e-10!9;UBERON:0000025!4.82e-10!194;UBERON:0005383!1.39e-08!3;UBERON:0005382!1.39e-08!3;UBERON:0000988!1.82e-08!3;UBERON:0004111!3.75e-08!241;UBERON:0009663!4.44e-08!7;UBERON:0000475!5.70e-08!365;UBERON:0001000!1.74e-07!1;UBERON:0005352!1.74e-07!1;UBERON:0001882!1.85e-07!1;UBERON:0005403!1.85e-07!1;UBERON:0003112!1.97e-07!1;UBERON:0000032!1.97e-07!1;UBERON:0005253!1.97e-07!1;UBERON:0003128!1.97e-07!1;UBERON:0002241!1.97e-07!1;UBERON:0001703!1.97e-07!1;UBERON:0004761!1.97e-07!1;UBERON:0009617!1.97e-07!1;UBERON:0000064!2.01e-07!219;UBERON:0002902!2.09e-07!1;UBERON:0009899!2.09e-07!1;UBERON:0002581!2.37e-07!1;UBERON:0002022!2.67e-07!1;UBERON:0003296!2.76e-07!4;UBERON:0010133!2.76e-07!4;UBERON:0001874!3.62e-07!1;UBERON:0006834!5.84e-07!1;UBERON:0000477!6.00e-07!286;UBERON:0002336!7.40e-07!1;UBERON:0001018!7.40e-07!1;UBERON:0002473!7.40e-07!1;UBERON:0005340!7.40e-07!1;UBERON:0002316!7.40e-07!1;UBERON:0003544!7.40e-07!1;UBERON:0001020!7.40e-07!1;UBERON:0005970!7.40e-07!1;UBERON:0002437!7.40e-07!1;UBERON:0000483!7.70e-07!309;UBERON:0000119!1.00e-06!312 | |||
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|short_description=p5@KCNB1 | |||
}} |
Revision as of 08:58, 12 September 2013
Short description: | p5@KCNB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_KCNB1_5end |
Coexpression cluster: | C73_pineal_eye_retina_caudate_cerebellum_left_parietal |
Association with transcript: | 146bp_to_NM_004975_5end |
EntrezGene: | KCNB1 |
HGNC: | 6231 |
UniProt: | Q14721 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.68e-99 | 2 |
regional part of epithalamus | 5.68e-99 | 2 |
secretory circumventricular organ | 5.68e-99 | 2 |
circumventricular organ | 5.68e-99 | 2 |
epithalamus | 5.68e-99 | 2 |
gland of diencephalon | 3.11e-50 | 4 |
neuroendocrine gland | 3.11e-50 | 4 |
regional part of diencephalon | 3.11e-50 | 4 |
diencephalon | 2.74e-29 | 7 |
future diencephalon | 2.74e-29 | 7 |
eye | 1.86e-10 | 21 |
visual system | 1.86e-10 | 21 |
retina | 1.44e-09 | 6 |
photoreceptor array | 1.44e-09 | 6 |
posterior segment of eyeball | 1.44e-09 | 6 |
sense organ | 2.78e-09 | 24 |
sensory system | 2.78e-09 | 24 |
entire sense organ system | 2.78e-09 | 24 |
pre-chordal neural plate | 4.28e-08 | 61 |
endocrine gland | 9.98e-07 | 35 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.