FFCP PHASE1:Hg19::chr6:1389824..1389840,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2295|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3810|TSSclassifier=S|UniProt=Q12947|association_with_transcript=-228bp_to_ENST00000259806,NM_001452,uc003mtm.2,uc003mtn.2_5end|coexpression_cluster_id=C2845|description=CAGE_peak_3_at_FOXF2_5end|id=chr6:1389824..1389840,+|ontology_enrichment_celltype=CL:0000057!8.36e-13!75;CL:0000055!6.22e-12!180;CL:0002556!6.81e-07!6|ontology_enrichment_celltype_v019=CL:0002556;7.35e-13;6!CL:0002552;7.25e-11;5|ontology_enrichment_celltype_v019_2=CL:0002556,7.87e-13,6;CL:0002552,6.42e-11,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!3.01e-10!155;UBERON:0001555!3.01e-10!155;UBERON:0007026!3.01e-10!155;UBERON:0000481!6.55e-10!347;UBERON:0000033!1.34e-09!123;UBERON:0000153!2.52e-09!129;UBERON:0007811!2.52e-09!129;UBERON:0000475!8.42e-09!365;UBERON:0004119!1.41e-08!169;UBERON:0000925!1.41e-08!169;UBERON:0006595!1.41e-08!169;UBERON:0000064!1.89e-07!219;UBERON:0001758!6.81e-07!6;UBERON:0003672!6.81e-07!6|ontology_enrichment_uberon_v019=UBERON:0001758;7.35e-13;6!UBERON:0003672;7.35e-13;6!UBERON:0001555;2.35e-11;54!UBERON:0000075;3.67e-11;16!UBERON:0003129;7.27e-11;7!UBERON:0011137;7.51e-09;11!UBERON:0010323;7.51e-09;11!UBERON:0000165;3.52e-08;28!UBERON:0000160;1.61e-07;17!UBERON:0005409;7.70e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.19e-16,145;UBERON:0001555,8.19e-16,145;UBERON:0007026,8.19e-16,145;UBERON:0004119,9.56e-16,160;UBERON:0000925,9.56e-16,160;UBERON:0006595,9.56e-16,160;UBERON:0001758,7.87e-13,6;UBERON:0003672,7.87e-13,6;UBERON:0000075,4.22e-11,16;UBERON:0003129,7.69e-11,7;UBERON:0001004,8.33e-10,74;UBERON:0000165,2.40e-09,29;UBERON:0000930,2.40e-09,29;UBERON:0004921,2.69e-09,118;UBERON:0010323,7.83e-09,11;UBERON:0011216,1.13e-08,223;UBERON:0011137,1.52e-08,14;UBERON:0000160,1.80e-07,17;UBERON:0005178,2.60e-07,34;UBERON:0002224,2.60e-07,34;UBERON:0005181,5.21e-07,35;UBERON:0000033,5.22e-07,56;UBERON:0000065,5.53e-07,54;UBERON:0008947,8.42e-07,38;UBERON:0003258,8.42e-07,38;UBERON:0000153,9.26e-07,62;UBERON:0007811,9.26e-07,62|phase1_expression=0.363356758541113,0.642301571672949,0.422863212287913,0,0.446961094427288,0.872338524100369,0,0,0,1.72013755551056,2.79120467188971,0,0,2.10402800032079,2.31978163009541,0,0,1.46062018077475,0.975865597581014,0.123121058076788,0.204000691244253,0.940364164434263,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,1.50401373190767,1.15877215168659,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0.860509862246441,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,3.32986340818849,1.72852777344,1.40592859100278,0.936480230490962,1.1409436430889,0.448346041655403,0.117434498643765,0,0.140450806702248,2.44985005505872,7.49289335601785,10.6425554611038,16.6320400019487,7.66527480763526,0,0.718618141816238,7.07011678607078,9.00853343078142,4.15596173226274,17.9980824561144,5.51678032438235,7.36166488642324,0,0.358779271377724,0.213557388818567,0.635795703478686,0,0.309157587715317,0,0.18611685633159,0.506328996723799,0.292311015483596,0.252433774244115,0.368199594569197,1.2931684545505,0.355009592516614,0.201504196455281,3.05209066158878,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,1.0647612003586,2.36018566109342,0.482022059766964,2.42646740011267,1.96091499683166,1.66089433377768,0.539325232640658,0.98110732562673,0.38474715694639,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,1.62904152655162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.761974731506028,1.14596527667483,2.34434894420094,3.4214489204541,1.13110241973656,0.300343057843917,0.571652865261156,1.79409734952577,1.74384027533312,1.24675085895615,0,0,1.690605505112,0,0,0,0,0,0.57191197463259,0,0.823240336780769,0,0.710783897485092,0,0.602878754119172,0.871533458600294,0,0,0,0,1.4377491329495,1.14861935834114,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,2.69921281782108,0.500170521059677,0.542530047399471,0.415941723061614,1.60586089917446,1.57702415033935,0.35142424497814,0,0,0,0,0.368738337083406,6.69003831404238,0.587403472388222,2.05886054286514,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0.841980283299221,0.640695746278505,0,0.804269605718038,0,0.616838775210622,0,0.657017248110473,0,1.04589340613963,0,0,0,2.98517565227978,0,2.36023946926963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75169719801128,1.00726411300178,0.082509499920588,0,0,0,0.193341436584244,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0.869932992075073,0,0,0.744316738719335,0,0,3.07077349573601,3.85145089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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2295 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3810 | |||
|TSSclassifier=S | |||
|UniProt=Q12947 | |||
|association_with_transcript=-228bp_to_ENST00000259806,NM_001452,uc003mtm.2,uc003mtn.2_5end | |||
|coexpression_cluster_id=C2845 | |||
|description=CAGE_peak_3_at_FOXF2_5end | |||
|id=chr6:1389824..1389840,+ | |||
|ontology_enrichment_celltype=CL:0000057!8.36e-13!75;CL:0000055!6.22e-12!180;CL:0002556!6.81e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002556;7.35e-13;6!CL:0002552;7.25e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002556,7.87e-13,6;CL:0002552,6.42e-11,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!3.01e-10!155;UBERON:0001555!3.01e-10!155;UBERON:0007026!3.01e-10!155;UBERON:0000481!6.55e-10!347;UBERON:0000033!1.34e-09!123;UBERON:0000153!2.52e-09!129;UBERON:0007811!2.52e-09!129;UBERON:0000475!8.42e-09!365;UBERON:0004119!1.41e-08!169;UBERON:0000925!1.41e-08!169;UBERON:0006595!1.41e-08!169;UBERON:0000064!1.89e-07!219;UBERON:0001758!6.81e-07!6;UBERON:0003672!6.81e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;7.35e-13;6!UBERON:0003672;7.35e-13;6!UBERON:0001555;2.35e-11;54!UBERON:0000075;3.67e-11;16!UBERON:0003129;7.27e-11;7!UBERON:0011137;7.51e-09;11!UBERON:0010323;7.51e-09;11!UBERON:0000165;3.52e-08;28!UBERON:0000160;1.61e-07;17!UBERON:0005409;7.70e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.19e-16,145;UBERON:0001555,8.19e-16,145;UBERON:0007026,8.19e-16,145;UBERON:0004119,9.56e-16,160;UBERON:0000925,9.56e-16,160;UBERON:0006595,9.56e-16,160;UBERON:0001758,7.87e-13,6;UBERON:0003672,7.87e-13,6;UBERON:0000075,4.22e-11,16;UBERON:0003129,7.69e-11,7;UBERON:0001004,8.33e-10,74;UBERON:0000165,2.40e-09,29;UBERON:0000930,2.40e-09,29;UBERON:0004921,2.69e-09,118;UBERON:0010323,7.83e-09,11;UBERON:0011216,1.13e-08,223;UBERON:0011137,1.52e-08,14;UBERON:0000160,1.80e-07,17;UBERON:0005178,2.60e-07,34;UBERON:0002224,2.60e-07,34;UBERON:0005181,5.21e-07,35;UBERON:0000033,5.22e-07,56;UBERON:0000065,5.53e-07,54;UBERON:0008947,8.42e-07,38;UBERON:0003258,8.42e-07,38;UBERON:0000153,9.26e-07,62;UBERON:0007811,9.26e-07,62 | |||
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| |||
|short_description=p3@FOXF2 | |||
}} |
Revision as of 18:21, 13 September 2013
Short description: | p3@FOXF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_FOXF2_5end |
Coexpression cluster: | C2845_Fibroblast_retina_normal_colon_Smooth_rectum_synovial |
Association with transcript: | -228bp_to_ENST00000259806, NM_001452, uc003mtm.2, uc003mtn.2_5end |
EntrezGene: | FOXF2 |
HGNC: | 3810 |
UniProt: | Q12947 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of periodontium | 7.87e-13 | 6 |
fibroblast of gingiva | 6.42e-11 | 5 |
Ontology term | p-value | n |
---|---|---|
digestive system | 8.19e-16 | 145 |
digestive tract | 8.19e-16 | 145 |
primitive gut | 8.19e-16 | 145 |
endoderm-derived structure | 9.56e-16 | 160 |
endoderm | 9.56e-16 | 160 |
presumptive endoderm | 9.56e-16 | 160 |
periodontium | 7.87e-13 | 6 |
dentition | 7.87e-13 | 6 |
subdivision of skeletal system | 4.22e-11 | 16 |
skull | 7.69e-11 | 7 |
respiratory system | 8.33e-10 | 74 |
mouth | 2.40e-09 | 29 |
stomodeum | 2.40e-09 | 29 |
subdivision of digestive tract | 2.69e-09 | 118 |
cranial skeletal system | 7.83e-09 | 11 |
organ system subdivision | 1.13e-08 | 223 |
axial skeletal system | 1.52e-08 | 14 |
intestine | 1.80e-07 | 17 |
thoracic cavity element | 2.60e-07 | 34 |
thoracic cavity | 2.60e-07 | 34 |
thoracic segment organ | 5.21e-07 | 35 |
head | 5.22e-07 | 56 |
respiratory tract | 5.53e-07 | 54 |
respiratory primordium | 8.42e-07 | 38 |
endoderm of foregut | 8.42e-07 | 38 |
anterior region of body | 9.26e-07 | 62 |
craniocervical region | 9.26e-07 | 62 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.