FFCP PHASE1:Hg19::chrX:17755563..17755618,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6322|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10580|TSSclassifier=S|UniProt=Q9UN30|association_with_transcript=0bp_to_ENST00000380041,ENST00000380043,ENST00000380045,ENST00000398080,NM_001037535,NM_001037536,NM_001037540,NM_006746,uc004cyb.2,uc004cyc.2,uc004cyd.2,uc004cye.2_5end|description=CAGE_peak_1_at_SCML1_5end|id=chrX:17755563..17755618,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!9.38e-10!155;UBERON:0001555!9.38e-10!155;UBERON:0007026!9.38e-10!155;UBERON:0004921!4.56e-08!129;UBERON:0004185!4.56e-08!129;UBERON:0004119!1.17e-07!169;UBERON:0000925!1.17e-07!169;UBERON:0006595!1.17e-07!169;UBERON:0000062!1.86e-07!511|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0011216,2.36e-14,223;UBERON:0001007,3.27e-11,145;UBERON:0001555,3.27e-11,145;UBERON:0007026,3.27e-11,145;UBERON:0004921,1.68e-09,118;UBERON:0004119,9.45e-09,160;UBERON:0000925,9.45e-09,160;UBERON:0006595,9.45e-09,160|phase1_expression=2.18014055124668,5.35251309727458,3.94672331468719,1.0007329835313,2.68176656656373,3.48935409640147,2.53299878168311,3.15859936713415,4.17897005119742,1.96587149201207,0,1.74753097704138,0.527533956456907,0.74259811776028,3.31397375727916,1.34465029290355,3.01347264011988,0.730310090387373,0.975865597581014,1.96993692922861,3.06001036866379,2.19418305034661,5.43848375549008,2.46373965131192,6.40267461933494,6.87720651731561,5.09023654589664,6.53299484903538,0.393364276848904,1.15148819429164,1.39334510984468,4.59710612239464,1.50602959389125,3.69754010166788,0,0,0,6.09394949385065,3.60980005446255,5.64228263861215,1.79132379391939,2.26725566213286,0.77272670290256,0.436194716338694,1.51150377475524,1.69808842831471,1.39457422143411,3.28934310417461,4.33588919253145,2.01384674625505,2.0492856522328,1.6553756092201,1.37898272294647,4.51839278508678,5.41705946377367,1.12945403725563,2.18324920046277,2.69668181334102,2.14258724659632,3.53021929783703,4.47535988059329,0.989553900560148,3.39088217956774,3.83602275479425,2.32167390902867,1.70215567407342,4.35975574296902,2.51248665256743,2.60741459210101,4.56096573880745,3.63239701580021,5.52416453981347,6.64571013625857,1.05627643155971,1.27562579979026,0.838634582033504,1.01095768031846,0.901061357049038,1.12507910687956,0.570025487482497,0.59675003159727,2.00930569141097,3.51992488922645,4.91524750135918,2.66852776159066,3.41384178053206,1.60158394814405,1.72425731986345,3.30522436392431,2.86216126360609,6.26134266020393,8.80855784056408,6.49864487812889,2.64342657158052,7.8471198817415,1.05353633910031,22.8183333332046,18.0784950864616,14.3921049299656,0,16.2961133316795,9.9424039204294,9.74133642039557,0,0.294605907474837,1.10766947291811,0,0,0,0.657751618414705,0,1.15921234294021,27.2847276218191,16.5875313415622,15.6803285707465,0.113309342697566,3.83220493601921,3.4362744548263,3.28925599625354,5.41561204350964,5.20866763085135,5.70271226669025,11.1425588117552,6.14335733541208,1.24930726552346,6.15620855314444,2.46338399076314,9.67712367478716,4.54648332831962,16.2203332348735,7.31420598941885,2.01210257911091,1.79007586580942,11.2046137239216,3.00802746381534,3.18662341713812,5.5670016293577,4.86634870302636,3.59232305223458,1.55210578223795,3.07421749925941,7.85874452986276,0.364295288292542,2.59549109949101,2.27183175558278,0.870648686496336,1.19662164466979,3.10037811596945,4.0039643754609,2.97166001063652,2.38514888840046,1.72046919021225,4.51282652089873,2.26123176769604,1.67799774483962,3.85165258716094,3.76190939766259,3.87625138753993,5.33649394030065,3.01248551488203,3.22263453687318,2.28081631715554,1.22031028774085,3.30896772311282,0.81014194788176,7.14397826272638,7.63399866928977,8.89630695818246,3.06633274931766,5.69559395740877,5.1296488300514,1.31780417436063,0,2.61656431285521,4.96971951695318,2.15271869829786,5.82600395578163,5.73673241497627,3.54668382198357,1.68203280042692,1.06748995729705,1.48000529050296,3.42332138939743,3.63718814588158,3.26923806226917,3.17850598054356,1.72852777344,1.17160715916898,2.49728061464256,3.99330275081114,3.13842229158782,8.57271840099484,8.7411389958791,8.9888516289439,5.10385428137233,10.3180826541885,5.16628905878827,3.56400857184616,2.71993622206413,2.73048408581408,0.718618141816238,7.57512512793298,9.63412603014124,11.3596287348515,7.46261955497424,3.98434134538726,6.76071265079686,2.83580457900053,7.35497506324334,7.26095121983129,4.4505699243508,6.00182192168805,4.43125875725287,4.89517026086695,2.97786970130544,4.89451363499672,3.11798416515836,2.52433774244115,3.22174645248048,7.43571861366535,4.61512470271599,4.63459651847145,2.20428770003634,1.54608682530637,5.45492241181669,4.87567812161307,0.853815942907168,0.927708378250397,2.5562667431294,3.83545903556871,1.0092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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6322 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10580 | |||
|TSSclassifier=S | |||
|UniProt=Q9UN30 | |||
|association_with_transcript=0bp_to_ENST00000380041,ENST00000380043,ENST00000380045,ENST00000398080,NM_001037535,NM_001037536,NM_001037540,NM_006746,uc004cyb.2,uc004cyc.2,uc004cyd.2,uc004cye.2_5end | |||
|description=CAGE_peak_1_at_SCML1_5end | |||
|id=chrX:17755563..17755618,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!9.38e-10!155;UBERON:0001555!9.38e-10!155;UBERON:0007026!9.38e-10!155;UBERON:0004921!4.56e-08!129;UBERON:0004185!4.56e-08!129;UBERON:0004119!1.17e-07!169;UBERON:0000925!1.17e-07!169;UBERON:0006595!1.17e-07!169;UBERON:0000062!1.86e-07!511 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,2.36e-14,223;UBERON:0001007,3.27e-11,145;UBERON:0001555,3.27e-11,145;UBERON:0007026,3.27e-11,145;UBERON:0004921,1.68e-09,118;UBERON:0004119,9.45e-09,160;UBERON:0000925,9.45e-09,160;UBERON:0006595,9.45e-09,160 | |||
|phase1_expression=2.18014055124668,5.35251309727458,3.94672331468719,1.0007329835313,2.68176656656373,3.48935409640147,2.53299878168311,3.15859936713415,4.17897005119742,1.96587149201207,0,1.74753097704138,0.527533956456907,0.74259811776028,3.31397375727916,1.34465029290355,3.01347264011988,0.730310090387373,0.975865597581014,1.96993692922861,3.06001036866379,2.19418305034661,5.43848375549008,2.46373965131192,6.40267461933494,6.87720651731561,5.09023654589664,6.53299484903538,0.393364276848904,1.15148819429164,1.39334510984468,4.59710612239464,1.50602959389125,3.69754010166788,0,0,0,6.09394949385065,3.60980005446255,5.64228263861215,1.79132379391939,2.26725566213286,0.77272670290256,0.436194716338694,1.51150377475524,1.69808842831471,1.39457422143411,3.28934310417461,4.33588919253145,2.01384674625505,2.0492856522328,1.6553756092201,1.37898272294647,4.51839278508678,5.41705946377367,1.12945403725563,2.18324920046277,2.69668181334102,2.14258724659632,3.53021929783703,4.47535988059329,0.989553900560148,3.39088217956774,3.83602275479425,2.32167390902867,1.70215567407342,4.35975574296902,2.51248665256743,2.60741459210101,4.56096573880745,3.63239701580021,5.52416453981347,6.64571013625857,1.05627643155971,1.27562579979026,0.838634582033504,1.01095768031846,0.901061357049038,1.12507910687956,0.570025487482497,0.59675003159727,2.00930569141097,3.51992488922645,4.91524750135918,2.66852776159066,3.41384178053206,1.60158394814405,1.72425731986345,3.30522436392431,2.86216126360609,6.26134266020393,8.80855784056408,6.49864487812889,2.64342657158052,7.8471198817415,1.05353633910031,22.8183333332046,18.0784950864616,14.3921049299656,0,16.2961133316795,9.9424039204294,9.74133642039557,0,0.294605907474837,1.10766947291811,0,0,0,0.657751618414705,0,1.15921234294021,27.2847276218191,16.5875313415622,15.6803285707465,0.113309342697566,3.83220493601921,3.4362744548263,3.28925599625354,5.41561204350964,5.20866763085135,5.70271226669025,11.1425588117552,6.14335733541208,1.24930726552346,6.15620855314444,2.46338399076314,9.67712367478716,4.54648332831962,16.2203332348735,7.31420598941885,2.01210257911091,1.79007586580942,11.2046137239216,3.00802746381534,3.18662341713812,5.5670016293577,4.86634870302636,3.59232305223458,1.55210578223795,3.07421749925941,7.85874452986276,0.364295288292542,2.59549109949101,2.27183175558278,0.870648686496336,1.19662164466979,3.10037811596945,4.0039643754609,2.97166001063652,2.38514888840046,1.72046919021225,4.51282652089873,2.26123176769604,1.67799774483962,3.85165258716094,3.76190939766259,3.87625138753993,5.33649394030065,3.01248551488203,3.22263453687318,2.28081631715554,1.22031028774085,3.30896772311282,0.81014194788176,7.14397826272638,7.63399866928977,8.89630695818246,3.06633274931766,5.69559395740877,5.1296488300514,1.31780417436063,0,2.61656431285521,4.96971951695318,2.15271869829786,5.82600395578163,5.73673241497627,3.54668382198357,1.68203280042692,1.06748995729705,1.48000529050296,3.42332138939743,3.63718814588158,3.26923806226917,3.17850598054356,1.72852777344,1.17160715916898,2.49728061464256,3.99330275081114,3.13842229158782,8.57271840099484,8.7411389958791,8.9888516289439,5.10385428137233,10.3180826541885,5.16628905878827,3.56400857184616,2.71993622206413,2.73048408581408,0.718618141816238,7.57512512793298,9.63412603014124,11.3596287348515,7.46261955497424,3.98434134538726,6.76071265079686,2.83580457900053,7.35497506324334,7.26095121983129,4.4505699243508,6.00182192168805,4.43125875725287,4.89517026086695,2.97786970130544,4.89451363499672,3.11798416515836,2.52433774244115,3.22174645248048,7.43571861366535,4.61512470271599,4.63459651847145,2.20428770003634,1.54608682530637,5.45492241181669,4.87567812161307,0.853815942907168,0.927708378250397,2.5562667431294,3.83545903556871,1.00928340350251,1.09493207722749,3.12899064659632,1.28648187638577,2.76269842704961,5.10804720835177,7.21879481669586,7.92655560266954,7.58631105351458,7.23033089650446,8.60292987312673,6.10062443458737,7.35538919244399,9.70785418753184,7.45641567476315,5.77120735419586,3.69077727312324,0,2.4694440679884,0,10.1404027857465,7.86261773342101,10.6342183202653,0,9.47010976781974,2.57351715447788,2.30475599358114,1.1240175325762,6.93649909640253,5.18495292887766,1.62904152655162,0,0,3.24605133930215,4.10930429825376,1.87676382089396,0.462985512576611,2.47330397904978,0,0.858486162094873,0.246217006087397,2.34004265139238,0.594524649154913,0,3.86358894857377,3.26082723657489,4.92571874865666,8.13775027839093,3.83382679165211,4.43396914106349,1.23267807618516,6.01251535068239,11.097236413106,8.33200060614108,6.54028311209341,1.14596527667483,0,3.4214489204541,5.34702962057282,1.8020583470635,3.42991719156694,4.03671903643299,4.3596006883328,6.1604160089598,2.32689088364,3.57656445851882,5.071816515336,3.19125739901845,2.08014873822732,3.08648849114571,5.67396528093113,2.66422179016099,9.29356958777959,0.542621605391443,0.823240336780769,8.14340460734338,11.0171504110189,3.95975936466715,6.02878754119172,2.61460037580088,6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| |||
|short_description=p1@SCML1 | |||
}} |
Revision as of 11:30, 14 September 2013
Short description: | p1@SCML1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SCML1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000380041, ENST00000380043, ENST00000380045, ENST00000398080, NM_001037535, NM_001037536, NM_001037540, NM_006746, uc004cyb.2, uc004cyc.2, uc004cyd.2, uc004cye.2_5end |
EntrezGene: | SCML1 |
HGNC: | 10580 |
UniProt: | Q9UN30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 2.36e-14 | 223 |
digestive system | 3.27e-11 | 145 |
digestive tract | 3.27e-11 | 145 |
primitive gut | 3.27e-11 | 145 |
subdivision of digestive tract | 1.68e-09 | 118 |
endoderm-derived structure | 9.45e-09 | 160 |
endoderm | 9.45e-09 | 160 |
presumptive endoderm | 9.45e-09 | 160 |
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