FFCP PHASE1:Hg19::chrX:133119601..133119627,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2719|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4451|TSSclassifier=S|UniProt=P51654,Q2L880,Q2L882|association_with_transcript=38bp_to_uc004exe.1,uc010nrn.1,uc010nro.1,uc010nrp.1,uc011mvh.1_5end|coexpression_cluster_id=C786|description=CAGE_peak_1_at_GPC3_5end|id=chrX:133119601..133119627,-|ontology_enrichment_celltype=CL:0000136!2.83e-07!15|ontology_enrichment_celltype_v019=CL:0000136;1.18e-09;13|ontology_enrichment_celltype_v019_2=CL:0000136,7.73e-08,15|ontology_enrichment_development_v019=UBERON:0003104;2.78e-11;31!UBERON:0009117;5.22e-07;10!UBERON:0005564;5.22e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.41e-21!115;UBERON:0000062!1.98e-08!511;UBERON:0000468!2.21e-08!659;UBERON:0000064!2.47e-08!219;UBERON:0000475!4.52e-08!365;UBERON:0000481!8.67e-08!347;UBERON:0004121!1.58e-07!169;UBERON:0005743!4.07e-07!86;UBERON:0000924!4.42e-07!173;UBERON:0006601!4.42e-07!173;UBERON:0002417!4.53e-07!61;UBERON:0000916!4.53e-07!61;UBERON:0009569!9.52e-07!113|ontology_enrichment_uberon_v019=UBERON:0000922;5.51e-12;49!UBERON:0003135;5.70e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.51e-17,114;UBERON:0003103,4.14e-08,68;UBERON:0001007,4.23e-07,145;UBERON:0001555,4.23e-07,145;UBERON:0007026,4.23e-07,145;UBERON:0009569,4.47e-07,112;UBERON:0004119,4.88e-07,160;UBERON:0000925,4.88e-07,160;UBERON:0006595,4.88e-07,160;UBERON:0003135,5.46e-07,11;UBERON:0005631,7.50e-07,14;UBERON:0000158,7.50e-07,14|phase1_expression=29.2502190625596,27.4048670580458,19.59266216934,4.00293193412522,6.25745532198203,0,27.8629865985142,4.42203911398782,16.19350894839,1.47440361900905,0.697801167972428,3.27662058195258,2.37390280405608,0,0,0,0,0,0,0,0,0,0.572471974262113,0.136874425072884,0.376627918784408,0,0,0,0,0,28.0217183202098,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5565855763677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0,0.205601498999509,0,0.32592226663359,0,1.94826728407911,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0.289803085735052,0.593146252648242,0.802622484269139,1.04535523804977,0.226618685395132,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0,2.43806866313962,2.01210257911091,10.612592633013,0,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.351339142772504,18.7954973339218,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,1.77334191099179,11.2135520028461,0,0,7.46906484959439,0,0,0.454072282934794,1.15235184896,0.468642863667593,0,0,0,0.352303495931295,1.13311061057692,0.421352420106746,0,0.245668634623536,0,11.8800285728205,15.5778165445491,0,0,2.02003336744879,3.87867411603089,0.277064115484183,5.70670907145089,1.83892677479412,13.3711872426871,0,0,3.41691822109708,0,0,0,0,0,0,0,0,0.368199594569197,10.0220555227663,0,0,0.508681776931463,0,0,0,83.6739624049024,91.5780699101463,90.9798572668329,155.906226743117,152.906435630631,148.910762502939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,4.115740113314,0,0,0.982827216677626,5.31710916013264,1.32438929824395,537.951430187579,0.171567810298526,0,0,0,0.648119116109707,1.3032332212413,0,0,2.20267769452646,0,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0,0.283550194484773,0,0,1.15014803749563,0,0,0,0.144119953416961,0.12624243342638,0,0,0,23.9501424431787,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,4.28933980974443,3.25572963234866,0.823240336780769,0.325736184293735,1.42156779497018,0.791951872933429,0.301439377059586,0,1.3996218765488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,1.30139853857622,0,0.335032530668698,1.91381625495949,0,0,0,0,1.00034104211935,0,0,0,0,0,0,0,16.5556914068008,0,1.10621501125022,0.173767228936166,0,0,0.206768026122887,0,0.106727557803444,2.12189300012382,1.66435439510497,54.7326430926721,6.4508030032882,5.21770709179412,10.9457436828899,3.58789617915963,0,0.482561763430822,0,0,0,0,0,0,261.781567815454,0,0.0920809889358963,0,0,0,1.80479845162965,6.08421163124877,1.56869953835371,0,0.527758144464379,0,0,0.215915916102139,0,1.35473218771926,1.50506932156456,0.764628819135115,1.66215201785745,0.447749509444357,0,0,1.79515087581472,4.92021968549559,0,294.079047242599,0.183138929636687,0.330037999682352,0,0,0,0,0.154048617114644,1.38153307253517,0.137836572484531,0.107420244868274,0.145016693914229,0.340906509664404,0.979352392114111,0,0.192190067365106,0,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,1.02359116524534,0.42793898803392,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9676842561399,0,1.8589409885985,0,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0.329294892959902,0.379473173765715,0.699869440489966,0.0962221127255121,1.34060455107157,0,293.540370821997,0,0,0,0,0,0,0,0,0,0,0,0,348.88741630232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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2719 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4451 | |||
|TSSclassifier=S | |||
|UniProt=P51654,Q2L880,Q2L882 | |||
|association_with_transcript=38bp_to_uc004exe.1,uc010nrn.1,uc010nro.1,uc010nrp.1,uc011mvh.1_5end | |||
|coexpression_cluster_id=C786 | |||
|description=CAGE_peak_1_at_GPC3_5end | |||
|id=chrX:133119601..133119627,- | |||
|ontology_enrichment_celltype=CL:0000136!2.83e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.18e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,7.73e-08,15 | |||
|ontology_enrichment_development_v019=UBERON:0003104;2.78e-11;31!UBERON:0009117;5.22e-07;10!UBERON:0005564;5.22e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.41e-21!115;UBERON:0000062!1.98e-08!511;UBERON:0000468!2.21e-08!659;UBERON:0000064!2.47e-08!219;UBERON:0000475!4.52e-08!365;UBERON:0000481!8.67e-08!347;UBERON:0004121!1.58e-07!169;UBERON:0005743!4.07e-07!86;UBERON:0000924!4.42e-07!173;UBERON:0006601!4.42e-07!173;UBERON:0002417!4.53e-07!61;UBERON:0000916!4.53e-07!61;UBERON:0009569!9.52e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.51e-12;49!UBERON:0003135;5.70e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.51e-17,114;UBERON:0003103,4.14e-08,68;UBERON:0001007,4.23e-07,145;UBERON:0001555,4.23e-07,145;UBERON:0007026,4.23e-07,145;UBERON:0009569,4.47e-07,112;UBERON:0004119,4.88e-07,160;UBERON:0000925,4.88e-07,160;UBERON:0006595,4.88e-07,160;UBERON:0003135,5.46e-07,11;UBERON:0005631,7.50e-07,14;UBERON:0000158,7.50e-07,14 | |||
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| |||
|short_description=p1@GPC3 | |||
}} |
Revision as of 10:47, 14 September 2013
Short description: | p1@GPC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GPC3_5end |
Coexpression cluster: | C786_liver_hepatocellular_placenta_hepatoblastoma_normal_Intestinal_Wilms |
Association with transcript: | 38bp_to_uc004exe.1, uc010nrn.1, uc010nro.1, uc010nrp.1, uc011mvh.1_5end |
EntrezGene: | GPC3 |
HGNC: | 4451 |
UniProt: | P51654Q2L880Q2L882 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 7.73e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.51e-17 | 114 |
compound organ | 4.14e-08 | 68 |
digestive system | 4.23e-07 | 145 |
digestive tract | 4.23e-07 | 145 |
primitive gut | 4.23e-07 | 145 |
subdivision of trunk | 4.47e-07 | 112 |
endoderm-derived structure | 4.88e-07 | 160 |
endoderm | 4.88e-07 | 160 |
presumptive endoderm | 4.88e-07 | 160 |
male reproductive organ | 5.46e-07 | 11 |
extraembryonic membrane | 7.50e-07 | 14 |
membranous layer | 7.50e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.