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hs12340.11523-119I2','Hepatocyte%2c%20donor2.CNhs12349.11603-120I1','Hepatocyte%2c%20donor3.CNhs12626.11684-122I1','Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3','Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4','Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9','Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3','Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8','Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8','Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9','Keratocytes%2c%20donor1.CNhs11337.11527-119I6','Keratocytes%2c%20donor2.CNhs12095.11607-120I5','Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8','Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7','Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4','Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8','Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8','Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3','Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9','Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3','Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4','Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4','Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9','Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9','Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2','Mast%20cell%2c%20donor1.CNhs12566.11563-120D6','Mast%20cell%2c%20donor2.CNhs12594.11565-120D8','Mast%20cell%2c%20donor3.CNhs12593.11566-120D9','Mast%20cell%2c%20donor4.CNhs12592.11567-120E1','Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7','Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5','Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1','Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1','Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4','Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3','Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2','Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8','Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7','Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7','Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5','Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8','Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2','Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3','Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8','Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5','Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5','Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9','Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20c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var h_sample = ['Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8','Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4','Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6','Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7','Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8','Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9','Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8','Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4','Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4','Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7','Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6','Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3','Amniotic%20Epithelial%20Cells%2c%20donor3.CNhs12125.11694-123A2','Anulus%20Pulposus%20Cell%2c%20donor1.CNhs10876.11248-116E6','Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5','Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep1%20%28LK1%29.CNhs13339.12642-134G5','Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4','Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6','Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5','Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6','Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5','Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5','Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2','Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2','Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6','B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2','B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3','B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4','Basophils%2c%20donor1.CNhs12546.12241-129G9','Basophils%2c%20donor2.CNhs12563.12242-129H1','Basophils%2c%20donor3.CNhs12575.12243-129H2','Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4','Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8','Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3','Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8','Burkitt%27s%20lymphoma%20cell%20line%3aRAJI.CNhs11268.10476-106I8','CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1','CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9','CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9','CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4','CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5','CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5','CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9','CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9','CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1','CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2','CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6','CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7','CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8','CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6','CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7','CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8','CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5','CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6','CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7','CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4','CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5','CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6','CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1','CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2','CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3','CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7','CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8','CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-he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hs12340.11523-119I2','Hepatocyte%2c%20donor2.CNhs12349.11603-120I1','Hepatocyte%2c%20donor3.CNhs12626.11684-122I1','Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3','Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4','Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9','Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3','Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8','Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8','Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9','Keratocytes%2c%20donor1.CNhs11337.11527-119I6','Keratocytes%2c%20donor2.CNhs12095.11607-120I5','Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8','Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7','Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4','Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8','Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8','Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3','Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9','Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3','Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4','Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4','Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9','Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9','Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2','Mast%20cell%2c%20donor1.CNhs12566.11563-120D6','Mast%20cell%2c%20donor2.CNhs12594.11565-120D8','Mast%20cell%2c%20donor3.CNhs12593.11566-120D9','Mast%20cell%2c%20donor4.CNhs12592.11567-120E1','Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7','Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5','Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1','Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1','Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4','Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3','Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2','Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8','Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7','Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7','Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5','Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8','Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2','Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3','Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8','Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5','Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5','Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9','Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20c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return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" , "aTargets": [1],"fnRender": function (obj) {                   
                  var num =obj.aData[obj.iDataColumn];
                  return exp_converter(num,2,"e") ;
} }],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "asc" ]],
});
});
Line 43: Line 59:
}
}


     $('#m_pval_table').dataTable({
     var oTable = $('#m_pval_table').dataTable({
"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
"bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": false,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
"aaData": m_data,
"aaData": m_data,
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt", "aTargets": [1],"fnRender": function (obj) {                   
                  var num =obj.aData[obj.iDataColumn];
                  return exp_converter(num,2,"e") ;
} }],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "asc" ]],
});
});
var oTableTools = new TableTools( oTable, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"}, {"sExtends": "tsv", "mColumns": "visible"}, {"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]});
$('#export_tool').before( oTableTools.dom.container );
// GREAT table for human start
$('#great_table_human').dataTable({
"sScrollY": "300px",
"bScrollCollapse": true,
"bPaginate": true,
"bFilter": true,
"bInfo": true,
                "iDisplayLength": 10,
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
"aaSorting": [[ 2, "asc" ]],
"aoColumnDefs": [{ "bSortable": false, "aTargets": [0,1] },{ "sType": "numeric", "sWidth": "80pt", "aTargets": [2],"fnRender": function (obj) {                   
                  var num =obj.aData[obj.iDataColumn];
                  return exp_converter(num,2,"e") ;
} }]
});
// GREAT table for human end
// GREAT table for mouse start
$('#great_table_mouse').dataTable({
"sScrollY": "300px",
"bScrollCollapse": true,
"bPaginate": true,
"bFilter": true,
"bInfo": true,
                "iDisplayLength": 10,
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
"aaSorting": [[ 2, "asc" ]],
"aoColumnDefs": [{ "bSortable": false, "aTargets": [0,1] },{ "sType": "numeric", "sWidth": "80pt", "aTargets": [2], "fnRender": function (obj) {                   
                  var num =obj.aData[obj.iDataColumn];
                  return exp_converter(num,2,"e") ;
} }]
});
// GREAT table for mouse end
});
});
</script>
</script>
</html>
</html><html>
* Name:[[name::{{{name}}}]]
<div class="container">
== P-values for the human samples ==
  <div class="content">
{{#info:<br>Analyst: Michiel de Hoon}}
    <table class="details">
 
      <tr><th scope="row" align="right">name:</th><td></html>[[name::{{{name}}}]]<html></td></tr> 
    </table>
    </div>
  <div class="content">
        <img src="/resource_browser/seqlogos/novel/</html>{{PAGENAME}}<html>.png">
  </div>
</div></html>
{{Fontsize|3|Association to promoter expression in human samples}}{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon
<br><br>
link to source dataset <br>
[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt data]
}}
----
<table id="h_pval_table"></table>
<table id="h_pval_table"></table>
<br><br>
{{Fontsize|3|Association to promoter expression in mouse samples}}
{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon
<br><br>
link to source dataset <br>
[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt data]
}}
----
<!--
<span id="export_tool"></span>
-->
<table id="m_pval_table"></table>
<br><br>
{{Fontsize|3|GREAT analysis results for human}}
{{#info:<b>Summary:</b>Genomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon
<br><br>
link to source dataset <br>
[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/hg19.table.txt data]
}}
----
<table id="great_table_human">
<html><thead></html>
<th>GO ID</th><th>GO Term</th><th>p-value</th>
<html></thead><tbody></html>{{#arraydefine:tmp_go_stat_human|{{{great_results_human}}}|!}}
<!--{{#arraymap:{{{great_results_human}}}|!|$|<tr><td>{{#replace:$|;|</td><td>}}</td></tr>|}}-->
{{#loop:p
  | 0         
  | {{#arraysize:tmp_go_stat_human}}
  | <nowiki/><tr>{{#arraydefine:tmp_go_stat_human{{#var:p}}|{{#arrayindex:tmp_go_stat_human|{{#var:p}}}}|;}}{{#loop:j
  | 0         
  | {{#arraysize:tmp_go_stat_human{{#var:p}}}}
  | <nowiki/>
  {{#vardefine:inner_el_human|{{#arrayindex:tmp_go_stat_human{{#var:p}}|{{#var:j}} }}  }}
  <td>{{#ifeq:{{#sub:{{#var:inner_el_human}}|0|3}}|GO:|[http://amigo.geneontology.org/cgi-bin/amigo/term_details?term={{#var:inner_el_human}} {{#var:inner_el_human}}]|{{#var:inner_el_human}} }}</td>}}</tr>}}
<html></tbody></html>
<table>
<br><br>
{{Fontsize|3|GREAT analysis results for mouse}}{{#info:Genomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon <br><br>
link to source dataset <br>
[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/mm9.table.txt data]
}}
----
{{#if:{{{great_results_mouse}}}|
<table id="great_table_mouse">
<html><thead></html>
<th>GO ID</th><th>GO Term</th><th>p-value</th>{{#arraydefine:tmp_go_stat_mouse|{{{great_results_mouse}}}|!}}
<html></thead><tbody></html><!--{{#arraymap:{{{great_results_mouse}}}|!|$|<tr><td>{{#replace:$|;|</td><td>}}</td></tr>|}}-->
{{#loop:p
  | 0         
  | {{#arraysize:tmp_go_stat_mouse}}
  | <nowiki/><tr>{{#arraydefine:tmp_go_stat_mouse{{#var:p}}|{{#arrayindex:tmp_go_stat_mouse|{{#var:p}}}}|;}}{{#loop:j
  | 0         
  | {{#arraysize:tmp_go_stat_mouse{{#var:p}}}}
  | <nowiki/>
  {{#vardefine:inner_el_mouse|{{#arrayindex:tmp_go_stat_mouse{{#var:p}}|{{#var:j}} }}  }}
  <td>{{#ifeq:{{#sub:{{#var:inner_el_mouse}}|0|3}}|GO:|[http://amigo.geneontology.org/cgi-bin/amigo/term_details?term={{#var:inner_el_mouse}} {{#var:inner_el_mouse}}]|{{#var:inner_el_mouse}} }}</td>}}</tr>}}
<html></tbody></html>
<table>
|no results for this motif
}}


== P-values for the mouse samples ==
{{#info:<br>Analyst: Michiel de Hoon}}
<table id="m_pval_table"></table>




Line 77: Line 206:
{{#arraymap:{{{novel_motifs_human_sample_pval}}}|,|$
{{#arraymap:{{{novel_motifs_human_sample_pval}}}|,|$
|{{#set:novel_motifs_sample_pval=$}}
|{{#set:novel_motifs_sample_pval=$}}
}}
{{#arraymap:{{{novel_motifs_human_sample_pval}}}|,|$
|{{#set:motifs_sample_human_pval=$ }}
}}
{{#arraymap:{{{novel_motifs_mouse_sample_pval}}}|,|$
|{{#set:motifs_sample_mouse_pval=$ }}
}}
}}


Revision as of 10:47, 8 April 2014

name:{{{name}}}

Association to promoter expression in human samples<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data



Association to promoter expression in mouse samples <b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data



GREAT analysis results for human <b>Summary:</b>Genomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon<br><br>link to source dataset <br>data

GO IDGO Termp-value
{{{great_results_human}}}


GREAT analysis results for mouseGenomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon <br><br>link to source dataset <br>data

GO IDGO Termp-value
{{{great_results_mouse}}}
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