FFCP PHASE1:Hg19::chr3:63638339..63638365,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=132203 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33706 | |||
|TSSclassifier=strong | |||
|UniProt=A6NMZ2,C9JRU3 | |||
|association_with_transcript=0bp_to_ENST00000343837,ENST00000469440,NM_001080537,uc003dlr.2_5end | |||
|coexpression_cluster_id=C81 | |||
|description=CAGE_peak_1_at_SNTN_5end | |||
|id=chr3:63638339..63638365,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.26e-11;29!UBERON:0007297;3.82e-08;2!UBERON:0006965;6.58e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!3.30e-26!8;UBERON:0007023!4.17e-21!115;UBERON:0001896!1.13e-18!3;UBERON:0005290!1.13e-18!3;UBERON:0010096!1.13e-18!3;UBERON:0003076!1.31e-18!15;UBERON:0003057!1.31e-18!15;UBERON:0000988!3.36e-18!3;UBERON:0004733!2.53e-17!12;UBERON:0002028!2.53e-17!12;UBERON:0007277!2.53e-17!12;UBERON:0004732!5.91e-16!13;UBERON:0003127!5.87e-14!2;UBERON:0000341!8.58e-14!2;UBERON:0002148!7.96e-13!2;UBERON:0009662!7.96e-13!2;UBERON:0001049!2.13e-10!57;UBERON:0005068!2.13e-10!57;UBERON:0006241!2.13e-10!57;UBERON:0007135!2.13e-10!57;UBERON:0006331!7.60e-09!3;UBERON:0002616!3.47e-08!59;UBERON:0001301!7.03e-08!1;UBERON:0002171!8.54e-08!1;UBERON:0006518!8.54e-08!1;UBERON:0008949!8.54e-08!1;UBERON:0000101!8.54e-08!1;UBERON:0002167!8.54e-08!1;UBERON:0002336!2.66e-07!1;UBERON:0001018!2.66e-07!1;UBERON:0002473!2.66e-07!1;UBERON:0005340!2.66e-07!1;UBERON:0002316!2.66e-07!1;UBERON:0003544!2.66e-07!1;UBERON:0001020!2.66e-07!1;UBERON:0005970!2.66e-07!1;UBERON:0002437!2.66e-07!1;UBERON:0004913!3.40e-07!1;UBERON:0003703!3.40e-07!1;UBERON:0001174!3.40e-07!1;UBERON:0004914!3.40e-07!1;UBERON:0001882!4.90e-07!1;UBERON:0005403!4.90e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;6.20e-28;2!UBERON:0000341;1.49e-27;2!UBERON:0001301;5.42e-15;1!UBERON:0002171;7.63e-15;1!UBERON:0006518;7.63e-15;1!UBERON:0008949;7.63e-15;1!UBERON:0000101;7.63e-15;1!UBERON:0002167;7.63e-15;1!UBERON:0000974;7.59e-10;6!UBERON:0003126;1.13e-08;7!UBERON:0001005;1.13e-08;7!UBERON:0005178;5.15e-08;34!UBERON:0002224;5.15e-08;34!UBERON:0000007;8.32e-08;2!UBERON:0005181;5.78e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,6.20e-28,2;UBERON:0000341,1.40e-27,2;UBERON:0001301,5.42e-15,1;UBERON:0002171,8.17e-15,1;UBERON:0006518,8.17e-15,1;UBERON:0008949,8.17e-15,1;UBERON:0000101,8.17e-15,1;UBERON:0002167,8.17e-15,1;UBERON:0007023,1.63e-10,114;UBERON:0005178,6.56e-10,34;UBERON:0002224,6.56e-10,34;UBERON:0005181,1.27e-09,35;UBERON:0008947,7.38e-09,38;UBERON:0003258,7.38e-09,38;UBERON:0003126,1.13e-08,7;UBERON:0001005,1.13e-08,7;UBERON:0000007,9.19e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916853528483988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06082023295445,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.5751836122853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15425387755696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.5990334829929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,11.3194657321756,14.1483874589699,11.1844544943743,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.37061217822721,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,1.13831095675649,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66713136080127,0.267964130156178,0,0,7.67642334843531,10.4748349844046,0.0645889098360061,0,0,0,0,0,0,0,44.539489548852,9.64715033983439,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p1@SNTN | |||
}} |
Revision as of 19:34, 21 January 2014
Short description: | p1@SNTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_1_at_SNTN_5end |
Coexpression cluster: | C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid |
Association with transcript: | 0bp_to_ENST00000343837, ENST00000469440, NM_001080537, uc003dlr.2_5end |
EntrezGene: | SNTN |
HGNC: | 33706 |
UniProt: | A6NMZ2C9JRU3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 6.20e-28 | 2 |
throat | 1.40e-27 | 2 |
epididymis | 5.42e-15 | 1 |
lower lobe of right lung | 8.17e-15 | 1 |
right lung lobe | 8.17e-15 | 1 |
lower lobe of lung | 8.17e-15 | 1 |
lobe of lung | 8.17e-15 | 1 |
right lung | 8.17e-15 | 1 |
adult organism | 1.63e-10 | 114 |
thoracic cavity element | 6.56e-10 | 34 |
thoracic cavity | 6.56e-10 | 34 |
thoracic segment organ | 1.27e-09 | 35 |
respiratory primordium | 7.38e-09 | 38 |
endoderm of foregut | 7.38e-09 | 38 |
trachea | 1.13e-08 | 7 |
respiratory airway | 1.13e-08 | 7 |
pituitary gland | 9.19e-08 | 2 |