FFCP PHASE1:Hg19::chrX:51638616..51638639,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=9500 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6813 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-112bp_to_ENST00000482599_5end | |||
|coexpression_cluster_id=C4875 | |||
|description=CAGE_peak_4_at_MAGED1_5end | |||
|id=chrX:51638616..51638639,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.96e-29!180;CL:0000057!2.45e-15!75;CL:0000183!3.17e-13!59;CL:0000393!1.03e-12!60;CL:0000211!1.03e-12!60;CL:0000680!2.40e-12!57;CL:0000056!2.40e-12!57;CL:0000355!2.40e-12!57;CL:0000187!5.42e-12!54;CL:0002321!1.67e-11!248;CL:0000220!1.83e-11!246;CL:0000192!3.04e-11!42;CL:0000514!3.04e-11!42;CL:0000222!2.47e-10!119;CL:0000359!1.10e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000723;9.91e-09;61!CL:0000134;1.07e-08;55!CL:0000048;4.16e-08;58!CL:0000359;1.00e-07;32!CL:0000192;2.41e-07;43!CL:0000034;9.48e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.86e-14,76;CL:0000680,3.47e-10,58;CL:0000056,3.47e-10,58;CL:0000355,3.47e-10,58;CL:0000393,4.37e-10,61;CL:0000211,4.37e-10,61;CL:0000192,5.81e-10,43;CL:0000514,5.81e-10,43;CL:0000187,1.07e-09,55;CL:0000359,8.94e-08,32;CL:0000034,1.21e-07,441;CL:0000048,1.80e-07,427;CL:0000723,2.29e-07,433;CL:0002334,9.11e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;2.41e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.09e-13!143;UBERON:0000914!2.77e-13!83;UBERON:0002329!2.77e-13!83;UBERON:0003077!2.77e-13!83;UBERON:0003059!2.77e-13!83;UBERON:0007282!2.77e-13!83;UBERON:0009618!2.77e-13!83;UBERON:0007285!2.77e-13!83;UBERON:0004290!9.78e-12!70;UBERON:0000475!2.35e-11!365;UBERON:0001134!6.36e-11!61;UBERON:0002036!6.36e-11!61;UBERON:0003082!6.36e-11!61;UBERON:0000486!3.40e-10!82;UBERON:0002385!9.19e-10!63;UBERON:0001015!9.19e-10!63;UBERON:0000383!9.19e-10!63;UBERON:0002100!6.76e-09!216;UBERON:0000490!1.48e-08!138;UBERON:0002049!1.66e-08!79;UBERON:0007798!1.66e-08!79;UBERON:0004872!3.71e-08!84;UBERON:0000119!4.45e-07!312;UBERON:0000483!5.81e-07!309;UBERON:0003914!6.29e-07!118;UBERON:0000481!7.46e-07!347;UBERON:0001637!8.26e-07!42;UBERON:0003509!8.26e-07!42;UBERON:0004572!8.26e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005256,5.42e-11,122;UBERON:0007524,9.30e-11,73;UBERON:0007503,2.13e-10,78;UBERON:0003077,2.57e-10,72;UBERON:0007285,2.57e-10,72;UBERON:0002329,3.81e-10,71;UBERON:0003059,3.81e-10,71;UBERON:0007282,3.81e-10,71;UBERON:0004290,3.81e-10,71;UBERON:0009618,3.81e-10,71;UBERON:0003104,4.27e-10,160;UBERON:0009142,4.27e-10,160;UBERON:0001134,1.19e-09,62;UBERON:0002036,1.19e-09,62;UBERON:0003082,1.19e-09,62;UBERON:0002385,5.91e-09,64;UBERON:0001015,5.91e-09,64;UBERON:0000383,5.91e-09,64;UBERON:0000486,8.55e-08,83;UBERON:0004573,2.62e-07,33;UBERON:0004571,2.62e-07,33;UBERON:0001637,3.33e-07,42;UBERON:0003509,3.33e-07,42;UBERON:0004572,3.33e-07,42;UBERON:0004872,3.62e-07,83;UBERON:0002049,9.24e-07,78;UBERON:0007798,9.24e-07,78 | |||
|phase1_expression=1.45342703416445,5.35251309727458,2.53717927372748,5.00366491765652,1.34088328328186,6.10636966870258,0,1.26343974685366,0.261185628199839,0.982935746006035,0.697801167972428,0.873765488520689,1.58260186937072,2.97039247104112,1.98838425436749,3.36162573225888,4.82155622419182,5.11217063271161,4.39139518911456,0.61560529038394,4.48801520737357,2.19418305034661,0,2.6006140763848,1.50651167513763,0.993374274723366,0.57470412614962,0.629686250509434,0,0.383829398097213,0,0,0,0.739508020333575,0,0.142169232487422,0,0,0,0,0,0,0.257575567634187,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0.22465726229299,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0.393010762749165,0,0.167186495390678,0,0.473447805734733,0,0.445641827540694,0.294605907474837,0,0.812411591295047,0.768547918354051,0,0.328875809207352,0,0,0.14828656316206,0,0,0.113309342697566,0,0.34362744548263,0.253019692019503,0,0,0,0,0.255973222308837,0,0,0,0,0,0.144824403882799,2.43806866313962,0.670700859703636,0.639312809217652,0.722878304769133,2.00535164254356,2.31754430337318,0,5.35298357332899,1.13441780596881,3.54767035940102,2.28370442802128,0.392937226493138,0.364295288292542,0,0,0.174129737299267,0.26591592103773,0.476981248610684,0,0,0.198762407366705,0,0,0,0,1.6507082516404,1.04497483268405,0.775250277507987,0.71153252537342,0.33472061276467,0.805658634218294,1.52054421143703,1.46437234528902,0.367663080345869,4.86085168729056,1.3394959242612,1.12264686313085,0.337834441449967,0,0.949265659568129,0.549605231791222,0,0,0,1.49091585508596,2.27934920996244,2.1185468930115,3.72887606973458,4.25602058638028,3.36406560085384,1.06748995729705,3.94668077467456,0,1.0776853765575,1.14423332179421,1.05950199351452,1.15235184896,0.468642863667593,2.18512053781224,0.570471821544449,0.747243402759005,1.87895197830024,0.485618833104395,1.12360645361799,0.61246251376468,2.7023549808589,0.826606249406124,1.18800285728205,4.20353779773547,1.82032272387605,7.18618141816238,1.5150250255866,1.62654075833553,0.277064115484183,2.63386572528503,3.0648779579902,0.901428353439581,0.567160915800105,6.09924761342131,0.427114777637135,1.05965950579781,4.80145753735044,2.16410311400722,6.44101350114073,1.67505170698431,0.843881661206331,1.46155507741798,4.03894038790583,0.920498986422993,1.93975268182574,7.10019185033229,3.62707553619505,0.67824236924195,0.193260853163297,0.545492241181669,0.286804595389004,1.21973706129595,0.265059536642971,2.78865462886844,1.24393266018445,1.7662459561294,0.36497735907583,3.12899064659632,7.07565032012174,0,3.71494342425583,1.44375896333917,0,0.337169380156203,0.723033089650446,0.110293972732394,0.435758888184812,0,0.674156540800822,0,0,2.95262181849859,1.40241773803446,1.6462960453256,1.47008711385542,2.53510069643662,0,1.18157981336281,0.882926198829301,0.860919069801795,1.02940686179115,0.98775256867763,0,0.402115889646523,0.833296006426766,0.325808305310325,2.07986957055916,1.44331342025273,0.34779121492523,0.821860859650752,0.721832238805369,0,0.380508304469197,0,0,0.246217006087397,0.234004265139238,0.297262324577456,0,0.839910640994298,0.567100388969546,0.0895585227028483,0,0.383382679165211,0,0,0.829312462163088,0,0,0.190493682876507,0.381988425558278,1.17217447210047,3.4214489204541,1.13110241973656,1.8020583470635,0.571652865261156,0.448524337381443,0.87192013766656,0.8800594298514,1.42198887333556,0,3.381211010224,0.531876233169741,3.12022310734098,1.02882949704857,1.41849132023278,1.5985330740966,2.43062589218851,6.51145926469732,4.11620168390384,0.325736184293735,0.710783897485092,1.58390374586686,0.904318131178758,0,1.89948683245908,0,0,0,1.4377491329495,2.29723871668228,0,1.73737568001095,4.9314317412092,0.179060963239896,0.224170287987055,0,0.215627574859517,0,2.54094624222463,1.30139853857622,1.54657762555539,1.34013012267479,1.27587750330633,0,0,0,2.4538298343828,2.50085260529839,1.08506009479894,2.28767947683888,7.85087550707512,1.73472656537328,0.819989904948992,1.80567659836631,4.5481500811197,1.03473071292505,1.99267679560631,1.29058417979192,1.39013783148933,2.34961388955289,3.0882908142977,0,0,0.106727557803444,0,6.65741758041988,2.41912234663744,1.73675465473144,1.38115775959256,6.73584226639377,2.56278298511402,3.58195074346692,3.05622450172854,1.48418066444991,3.85524234506639,3.01854933032316,0.821271560138091,3.63478100428535,3.25389059687886,1.45031339509947,3.60911646545913,0.736647911487171,1.49258782613989,4.00600569614778,4.98272776845812,0,0.308061348417659,0,0,0.211103257785751,1.13733384070897,1.02056223165909,1.0795795805107,0,1.35473218771926,1.50506932156456,0.509752546090077,1.66215201785745,0.895499018888713,0,0,0.512900250232778,0.328014645699706,0,0.206082023295445,1.19040304263846,0.247528499761764,0,1.95018073810956,6.42735719376638,0.386682873168488,1.84858340537573,2.6095624703442,0.964856007391714,2.14840489736547,5.075584286998,1.02271952899321,0.801288320820636,0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| |||
|short_description=p4@MAGED1 | |||
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Revision as of 05:44, 23 January 2014
Short description: | p4@MAGED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_4_at_MAGED1_5end |
Coexpression cluster: | C4875_leiomyoma_Olfactory_Hair_smallcell_medial_tenocyte_Preadipocyte |
Association with transcript: | -112bp_to_ENST00000482599_5end |
EntrezGene: | MAGED1 |
HGNC: | 6813 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.86e-14 | 76 |
muscle precursor cell | 3.47e-10 | 58 |
myoblast | 3.47e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.47e-10 | 58 |
electrically responsive cell | 4.37e-10 | 61 |
electrically active cell | 4.37e-10 | 61 |
smooth muscle cell | 5.81e-10 | 43 |
smooth muscle myoblast | 5.81e-10 | 43 |
muscle cell | 1.07e-09 | 55 |
vascular associated smooth muscle cell | 8.94e-08 | 32 |
stem cell | 1.21e-07 | 441 |
multi fate stem cell | 1.80e-07 | 427 |
somatic stem cell | 2.29e-07 | 433 |
preadipocyte | 9.11e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 5.42e-11 | 122 |
dense mesenchyme tissue | 9.30e-11 | 73 |
epithelial vesicle | 2.13e-10 | 78 |
paraxial mesoderm | 2.57e-10 | 72 |
presumptive paraxial mesoderm | 2.57e-10 | 72 |
somite | 3.81e-10 | 71 |
presomitic mesoderm | 3.81e-10 | 71 |
presumptive segmental plate | 3.81e-10 | 71 |
dermomyotome | 3.81e-10 | 71 |
trunk paraxial mesoderm | 3.81e-10 | 71 |
mesenchyme | 4.27e-10 | 160 |
entire embryonic mesenchyme | 4.27e-10 | 160 |
skeletal muscle tissue | 1.19e-09 | 62 |
striated muscle tissue | 1.19e-09 | 62 |
myotome | 1.19e-09 | 62 |
muscle tissue | 5.91e-09 | 64 |
musculature | 5.91e-09 | 64 |
musculature of body | 5.91e-09 | 64 |
multilaminar epithelium | 8.55e-08 | 83 |
systemic artery | 2.62e-07 | 33 |
systemic arterial system | 2.62e-07 | 33 |
artery | 3.33e-07 | 42 |
arterial blood vessel | 3.33e-07 | 42 |
arterial system | 3.33e-07 | 42 |
splanchnic layer of lateral plate mesoderm | 3.62e-07 | 83 |
vasculature | 9.24e-07 | 78 |
vascular system | 9.24e-07 | 78 |