CL:0002552: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=fibroblast of gingiva | |name=fibroblast of gingiva | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-02-28T05:09:12Z | |obo_creation_date=2011-02-28T05:09:12Z | ||
|part_of=UBERON:0001828 | |part_of=UBERON:0001828 | ||
Latest revision as of 16:44, 12 September 2014
| Name: | fibroblast of gingiva |
|---|---|
| Namespace: | FANTOM |
| Created by: | tmeehan |
| Creation date: | 2011-02-28T05:09:12Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000057(fibroblast) |
|---|---|
| part_of: | UBERON:0001828(gingiva) |
Children
| derives from: | FF:0000063 (human fibroblast of gingiva sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
- 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
- 11924-125H7 (Fibroblast - Gingival, donor7 (control))
- 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))
... further results Mouse (Mus musculus)
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
- 11923-125H6 (Fibroblast - Gingival, donor7 (aggressive periodontitis))
- 11924-125H7 (Fibroblast - Gingival, donor7 (control))
- 11925-125H8 (Fibroblast - Gingival, donor8 (chronic periodontitis))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002552 (fibroblast of gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.29e-97 | FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_8a48b27a3b4473101d148dc9aeeb6373 | p@chr1:75599672..75599682, - |
| 1.29e-97 | FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_8a48b27a3b4473101d148dc9aeeb6373 | p@chr1:75599672..75599682, - |
| 3.0e-76 | FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_9c2ed40beef3d176071aad2f500e32fe | p1@ENST00000427892, p1@uc001dgp.1 |
| 3.0e-76 | FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_9c2ed40beef3d176071aad2f500e32fe | p1@ENST00000427892, p1@uc001dgp.1 |
| 2.01e-53 | FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_bcda8bc3e8d3e5784d730db3f6943090 | p@chr1:75599683..75599699, - |
| 2.01e-53 | FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_bcda8bc3e8d3e5784d730db3f6943090 | p@chr1:75599683..75599699, - |
| 2.19e-53 | FFCP PHASE2:Hg19::chr9:94586900..94586909,-#_e45cdb0d8792dbe870190a02ebbe36f2 | p@chr9:94586900..94586909, - |
| 2.19e-53 | FFCP PHASE1:Hg19::chr9:94586900..94586909,-#_e45cdb0d8792dbe870190a02ebbe36f2 | p@chr9:94586900..94586909, - |
| 8.55e-45 | FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_e19e0453d6829417dba760390d9cd689 | p@chr1:241577071..241577081, + |
| 8.55e-45 | FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_e19e0453d6829417dba760390d9cd689 | p@chr1:241577071..241577081, + |
| 2.63e-43 | FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_569e2654d605c39d35d34966eb4fe9b3 | p@chr2:172953513..172953549, - |
| 2.63e-43 | FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_569e2654d605c39d35d34966eb4fe9b3 | p@chr2:172953513..172953549, - |
| 2.93e-43 | FFCP PHASE1:Hg19::chr16:70597904..70597915,+#_dbdca5e1c81c4fafbf46d11d75eaa3e0 | p5@SF3B3 |
| 2.93e-43 | FFCP PHASE2:Hg19::chr16:70597904..70597915,+#_dbdca5e1c81c4fafbf46d11d75eaa3e0 | p5@SF3B3 |
| 2.71e-40 | FFCP PHASE1:Hg19::chr12:85306433..85306434,-#_90ab00c015cd14a84a03b3733cc4fba5 | p5@SLC6A15 |
| 2.71e-40 | FFCP PHASE2:Hg19::chr12:85306433..85306434,-#_90ab00c015cd14a84a03b3733cc4fba5 | p5@SLC6A15 |
| 6.5e-40 | FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_0c98927c1d1148139b2809952c888cd0 | p4@LHX8 |
| 6.5e-40 | FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_0c98927c1d1148139b2809952c888cd0 | p4@LHX8 |
| 1.75e-39 | FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_e0b386f48d4ad2cfa081158df97b2b23 | p2@LHX8 |
| 1.75e-39 | FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_e0b386f48d4ad2cfa081158df97b2b23 | p2@LHX8 |
| 5.92e-38 | FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_a5e606764cbe97e1564ecc138f06bfe1 | p@chr1:83982415..83982420, + |
| 5.92e-38 | FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_a5e606764cbe97e1564ecc138f06bfe1 | p@chr1:83982415..83982420, + |
| 9.52e-38 | FFCP PHASE1:Hg19::chr6:1389690..1389700,-#_fd418cb7dfcfded5737f335ba09d421b | p@chr6:1389690..1389700, - |
| 9.52e-38 | FFCP PHASE2:Hg19::chr6:1389690..1389700,-#_fd418cb7dfcfded5737f335ba09d421b | p@chr6:1389690..1389700, - |
| 3.25e-36 | FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_ba569d1126bbbc5c2dc93db6b285d31d | p18@SH3D19 |
| 3.25e-36 | FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_ba569d1126bbbc5c2dc93db6b285d31d | p18@SH3D19 |
| 3.45e-36 | FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_42a43a0c3920a8d7fd84c1af078a5d47 | p1@LHX8 |
| 3.45e-36 | FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_42a43a0c3920a8d7fd84c1af078a5d47 | p1@LHX8 |
| 2.13e-34 | FFCP PHASE1:Hg19::chr6:148761357..148761368,+#_6541d22138b92d22916ad240377f1df2 | p21@SASH1 |
| 2.13e-34 | FFCP PHASE2:Hg19::chr6:148761357..148761368,+#_6541d22138b92d22916ad240377f1df2 | p21@SASH1 |
| 1.23e-32 | FFCP PHASE1:Hg19::chr18:46607960..46607989,-#_bb0373eaa34a8432bd636e43d361909c | p@chr18:46607960..46607989, - |
| 1.23e-32 | FFCP PHASE2:Hg19::chr18:46607960..46607989,-#_bb0373eaa34a8432bd636e43d361909c | p@chr18:46607960..46607989, - |
| 1.99e-32 | FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_1d2b94c122597ab536d090f7a3c48e48 | p4@ENST00000473110 |
| 1.99e-32 | FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_1d2b94c122597ab536d090f7a3c48e48 | p@chr12:115777087..115777091, + |
| 1.99e-32 | FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_1d2b94c122597ab536d090f7a3c48e48 | p4@ENST00000473110 |
| 1.99e-32 | FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_1d2b94c122597ab536d090f7a3c48e48 | p@chr12:115777087..115777091, + |
| 1.74e-28 | FFCP PHASE2:Hg19::chr4:152086844..152086857,-#_03904f48ab655a00b504173a1f8e7eb6 | p11@SH3D19 |
| 1.74e-28 | FFCP PHASE1:Hg19::chr4:152086844..152086857,-#_03904f48ab655a00b504173a1f8e7eb6 | p11@SH3D19 |
| 4.43e-28 | FFCP PHASE2:Hg19::chr9:96717663..96717666,-#_6b5ccfab72111b97a7df233cb6d9ac73 | p4@BARX1 |
| 4.43e-28 | FFCP PHASE1:Hg19::chr9:96717663..96717666,-#_6b5ccfab72111b97a7df233cb6d9ac73 | p4@BARX1 |
| 4.61e-28 | FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_a8be525e40a4a28e7a2f30aaa420ee38 | p4@FOXF2 |
| 4.61e-28 | FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_a8be525e40a4a28e7a2f30aaa420ee38 | p4@FOXF2 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:57087225..57087229,-#_57a9390bcf0a3bc98fe7207ade10466f | p12@RAB23 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:57087225..57087229,-#_57a9390bcf0a3bc98fe7207ade10466f | p12@RAB23 |
| 1.4e-26 | FFCP PHASE2:Hg19::chr1:241576976..241576987,+#_3b0e0e8bd52be1a8eefca89d73a4802c | p@chr1:241576976..241576987, + |
| 1.4e-26 | FFCP PHASE1:Hg19::chr1:241576976..241576987,+#_3b0e0e8bd52be1a8eefca89d73a4802c | p@chr1:241576976..241576987, + |
| 1.81e-26 | FFCP PHASE1:Hg19::chrX:19688475..19688492,-#_04dd41a74647da8e6f8177775a56b5ed | p26@SH3KBP1 |
| 1.81e-26 | FFCP PHASE2:Hg19::chrX:19688475..19688492,-#_04dd41a74647da8e6f8177775a56b5ed | p26@SH3KBP1 |
| 2.16e-26 | FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_001beac3b9689c756849115b8581b3da | p@chr18:65337698..65337712, + |
| 2.16e-26 | FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_001beac3b9689c756849115b8581b3da | p@chr18:65337698..65337712, + |
| 7.91e-25 | FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_22d8a7125a576d694650644ee9542331 | p2@PAX9 |
| 7.91e-25 | FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_22d8a7125a576d694650644ee9542331 | p2@PAX9 |
| 1.26e-24 | FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_7b7c5635d4990fb5b1f21e4e79d20d86 | p@chr6:1389613..1389637, - |
| 1.26e-24 | FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_7b7c5635d4990fb5b1f21e4e79d20d86 | p@chr6:1389613..1389637, - |
| 3.13e-24 | FFCP PHASE1:Hg19::chr14:37126141..37126157,-#_bbb5a49f3a852e24ed3f9057c4de29fe | p@chr14:37126141..37126157, - |
| 3.13e-24 | FFCP PHASE2:Hg19::chr14:37126141..37126157,-#_bbb5a49f3a852e24ed3f9057c4de29fe | p@chr14:37126141..37126157, - |
| 9.35e-24 | FFCP PHASE2:Hg19::chr2:96012277..96012290,+#_68aecf605f75610b7913796e9ec2daed | p5@KCNIP3 |
| 9.35e-24 | FFCP PHASE1:Hg19::chr2:96012277..96012290,+#_68aecf605f75610b7913796e9ec2daed | p5@KCNIP3 |
| 1.44e-23 | FFCP PHASE2:Hg19::chr4:138448109..138448113,-#_f162fd00cc3b80d05e8d946a31fa4845 | p@chr4:138448109..138448113, - |
| 1.44e-23 | FFCP PHASE1:Hg19::chr4:138448109..138448113,-#_f162fd00cc3b80d05e8d946a31fa4845 | p@chr4:138448109..138448113, - |
| 1.61e-23 | FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_b2b287aebfedfa0bc26182eb61f80565 | p@chr10:28033565..28033575, - |
| 1.61e-23 | FFCP PHASE1:Hg19::chr10:28033565..28033575,-#_b2b287aebfedfa0bc26182eb61f80565 | p@chr10:28033565..28033575, - |
| 1.63e-23 | FFCP PHASE2:Hg19::chr1:241577012..241577023,+#_c40cdc64ca6839f45f0bc75c00aba6ef | p@chr1:241577012..241577023, + |
| 1.63e-23 | FFCP PHASE1:Hg19::chr1:241577012..241577023,+#_c40cdc64ca6839f45f0bc75c00aba6ef | p@chr1:241577012..241577023, + |
| 2.02e-23 | FFCP PHASE2:Hg19::chr5:115270490..115270517,-#_33a05c6a312f74bad2786dcea2e8d951 | p@chr5:115270490..115270517, - |
| 2.02e-23 | FFCP PHASE1:Hg19::chr5:115270490..115270517,-#_33a05c6a312f74bad2786dcea2e8d951 | p@chr5:115270490..115270517, - |
| 2.57e-23 | FFCP PHASE2:Hg19::chr4:4865276..4865280,-#_e50e3f9345e08779286e2ac96a879438 | p@chr4:4865276..4865280, - |
| 2.57e-23 | FFCP PHASE1:Hg19::chr4:4865276..4865280,-#_e50e3f9345e08779286e2ac96a879438 | p@chr4:4865276..4865280, - |
| 4.04e-23 | FFCP PHASE2:Hg19::chr8:19364029..19364048,-#_a57f0b1ce98e2f0048ff73ffbfd7f78f | p@chr8:19364029..19364048, - |
| 4.04e-23 | FFCP PHASE1:Hg19::chr8:19364029..19364048,-#_a57f0b1ce98e2f0048ff73ffbfd7f78f | p@chr8:19364029..19364048, - |
| 4.7e-23 | FFCP PHASE1:Hg19::chr16:86985410..86985422,-#_479b2d723ce18810b71dd86f19a52c5c | p@chr16:86985410..86985422, - |
| 4.7e-23 | FFCP PHASE2:Hg19::chr16:86985410..86985422,-#_479b2d723ce18810b71dd86f19a52c5c | p@chr16:86985410..86985422, - |
| 1.21e-22 | FFCP PHASE2:Hg19::chr1:31883012..31883032,+#_e81df48604f1aa1d4593d24abaa2fecf | p6@SERINC2 |
| 1.21e-22 | FFCP PHASE1:Hg19::chr1:31883012..31883032,+#_e81df48604f1aa1d4593d24abaa2fecf | p6@SERINC2 |
| 3.25e-22 | FFCP PHASE2:Hg19::chr1:31883057..31883076,+#_dbfad7dad8af122d7cb45172023d01d3 | p7@SERINC2 |
| 3.25e-22 | FFCP PHASE1:Hg19::chr1:31883057..31883076,+#_dbfad7dad8af122d7cb45172023d01d3 | p7@SERINC2 |
| 1.83e-21 | FFCP PHASE1:Hg19::chr17:80354715..80354726,+#_dbc618b1544972f2ad838ecfd53ba605 | p@chr17:80354715..80354726, + |
| 1.83e-21 | FFCP PHASE2:Hg19::chr17:80354715..80354726,+#_dbc618b1544972f2ad838ecfd53ba605 | p@chr17:80354715..80354726, + |
| 3.71e-21 | FFCP PHASE1:Hg19::chrX:19688455..19688469,-#_5470587c229d0ac765b7421c012ccb39 | p21@SH3KBP1 |
| 3.71e-21 | FFCP PHASE2:Hg19::chrX:19688455..19688469,-#_5470587c229d0ac765b7421c012ccb39 | p21@SH3KBP1 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr9:3856474..3856490,-#_28a65e7a524b5c6716874c751b390ac4 | p1@DQ438884 |
| 5.15e-21 | FFCP PHASE1:Hg19::chr15:33212102..33212104,-#_28a65e7a524b5c6716874c751b390ac4 | p@chr15:33212102..33212104, - |
| 5.15e-21 | FFCP PHASE1:Hg19::chr9:3856474..3856490,-#_28a65e7a524b5c6716874c751b390ac4 | p1@DQ438884 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr10:24738547..24738558,+#_28a65e7a524b5c6716874c751b390ac4 | p39@KIAA1217 |
| 5.15e-21 | FFCP PHASE1:Hg19::chr6:168333044..168333049,+#_28a65e7a524b5c6716874c751b390ac4 | p36@MLLT4 |
| 5.15e-21 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_28a65e7a524b5c6716874c751b390ac4 | p12@C17orf67 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr6:168333044..168333049,+#_28a65e7a524b5c6716874c751b390ac4 | p36@MLLT4 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr8:72274182..72274188,-#_28a65e7a524b5c6716874c751b390ac4 | p18@EYA1 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr11:103180104..103180109,+#_28a65e7a524b5c6716874c751b390ac4 | p@chr11:103180104..103180109, + |
| 5.15e-21 | FFCP PHASE2:Hg19::chr15:33212102..33212104,-#_28a65e7a524b5c6716874c751b390ac4 | p@chr15:33212102..33212104, - |
| 5.15e-21 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_28a65e7a524b5c6716874c751b390ac4 | p12@C17orf67 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_28a65e7a524b5c6716874c751b390ac4 | p19@SMEK2 |
| 5.15e-21 | FFCP PHASE1:Hg19::chr6:117086007..117086014,-#_28a65e7a524b5c6716874c751b390ac4 | p@chr6:117086007..117086014, - |
| 5.15e-21 | FFCP PHASE1:Hg19::chr8:72274182..72274188,-#_28a65e7a524b5c6716874c751b390ac4 | p18@EYA1 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr6:117086007..117086014,-#_28a65e7a524b5c6716874c751b390ac4 | p@chr6:117086007..117086014, - |
| 5.15e-21 | FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_28a65e7a524b5c6716874c751b390ac4 | p19@SMEK2 |
| 5.15e-21 | FFCP PHASE1:Hg19::chr20:49253425..49253427,-#_28a65e7a524b5c6716874c751b390ac4 | p14@FAM65C |
| 5.15e-21 | FFCP PHASE1:Hg19::chr8:124665891..124665894,-#_28a65e7a524b5c6716874c751b390ac4 | p@chr8:124665891..124665894, - |
| 5.15e-21 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_28a65e7a524b5c6716874c751b390ac4 | p13@C17orf67 |
| 5.15e-21 | FFCP PHASE2:Hg19::chr20:49253425..49253427,-#_28a65e7a524b5c6716874c751b390ac4 | p14@FAM65C |
