DOID:1909: Difference between revisions
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|located_in= | |located_in= | ||
|name=melanoma | |name=melanoma | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:49, 12 September 2014
| Name: | melanoma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from melanocytes which are found in skin, the bowel and the eye." [url:http://en.wikipedia.org/wiki/Melanoma] | ||
| Xrefs: |
| ||
| Synonyms: |
"malignant melanoma" EXACT [NCI2004_11_17:C3224] "malignant melanoma" EXACT [MTH:475] "malignant melanoma" EXACT [SNOMEDCT_2005_07_31:269577007] "malignant melanoma" EXACT [SNOMEDCT_2005_07_31:154501005] "malignant melanoma (disorder)" EXACT [SNOMEDCT_2005_07_31:372244006] "malignant melanoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:269503007] "malignant melanoma, morphology (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:2092003] "melanoma" EXACT [CSP2005:2020-2434] "melanoma" EXACT [MTH:NOCODE] "Naevocarcinoma" EXACT [SNOMEDCT_2005_07_31:189749008] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050687(cell type cancer) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10465-106H6 (melanoma cell line:G-361)
- 10514-107E1 (melanoma cell line:COLO 679)
- 10567-108A9
- 10602-108E8
- 10608-108F5
Mouse (Mus musculus)
- 10465-106H6 (melanoma cell line:G-361)
- 10514-107E1 (melanoma cell line:COLO 679)
- 10567-108A9
- 10602-108E8
- 10608-108F5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1909 (melanoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:85987839..85987846,+#_4991324b875f661973c7bba16db0bb96 | p20@ATOH8 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:85987891..85987897,+#_4991324b875f661973c7bba16db0bb96 | p22@ATOH8 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr6:165597276..165597281,-#_4991324b875f661973c7bba16db0bb96 | p@chr6:165597276..165597281, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:48274017..48274020,+#_4991324b875f661973c7bba16db0bb96 | p@chr2:48274017..48274020, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:85987891..85987897,+#_4991324b875f661973c7bba16db0bb96 | p22@ATOH8 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr6:165597276..165597281,-#_4991324b875f661973c7bba16db0bb96 | p@chr6:165597276..165597281, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:48274017..48274020,+#_4991324b875f661973c7bba16db0bb96 | p@chr2:48274017..48274020, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:100806148..100806155,-#_4991324b875f661973c7bba16db0bb96 | p@chr7:100806148..100806155, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:144866854..144866864,-#_4991324b875f661973c7bba16db0bb96 | p62@PDE4DIP |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:100806148..100806155,-#_4991324b875f661973c7bba16db0bb96 | p@chr7:100806148..100806155, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:144866854..144866864,-#_4991324b875f661973c7bba16db0bb96 | p62@PDE4DIP |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:100808620..100808648,-#_4991324b875f661973c7bba16db0bb96 | p4@VGF |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:144866866..144866877,-#_4991324b875f661973c7bba16db0bb96 | p61@PDE4DIP |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:100808620..100808648,-#_4991324b875f661973c7bba16db0bb96 | p4@VGF |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:144866866..144866877,-#_4991324b875f661973c7bba16db0bb96 | p61@PDE4DIP |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:85987839..85987846,+#_4991324b875f661973c7bba16db0bb96 | p20@ATOH8 |
| 4.61e-131 | FFCP PHASE1:Hg19::chr7:100807523..100807543,+#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100807523..100807543, + |
| 4.61e-131 | FFCP PHASE2:Hg19::chr7:100807523..100807543,+#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100807523..100807543, + |
| 4.61e-131 | FFCP PHASE1:Hg19::chr7:100806481..100806491,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100806481..100806491, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr7:100806481..100806491,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100806481..100806491, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr7:100807886..100807899,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100807886..100807899, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr7:100807886..100807899,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100807886..100807899, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr7:100808087..100808104,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100808087..100808104, - |
| 4.61e-131 | FFCP PHASE2:Hg19::chr7:100808087..100808104,-#_dba9d9bd8f30f1f235c1d6a3ef45a0f9 | p@chr7:100808087..100808104, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr7:100808304..100808313,-#_cd3ba000c6a887924e4170641ea51add | p5@VGF |
| 8.99e-131 | FFCP PHASE1:Hg19::chr6:96188999..96189001,-#_cd3ba000c6a887924e4170641ea51add | p@chr6:96188999..96189001, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr6:96188999..96189001,-#_cd3ba000c6a887924e4170641ea51add | p@chr6:96188999..96189001, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr19:35890402..35890413,+#_cd3ba000c6a887924e4170641ea51add | p@chr19:35890402..35890413, + |
| 8.99e-131 | FFCP PHASE2:Hg19::chr19:35890402..35890413,+#_cd3ba000c6a887924e4170641ea51add | p@chr19:35890402..35890413, + |
| 8.99e-131 | FFCP PHASE1:Hg19::chr7:100808304..100808313,-#_cd3ba000c6a887924e4170641ea51add | p5@VGF |
| 1.75e-130 | FFCP PHASE2:Hg19::chr12:9560067..9560068,-#_c3255f62397c19b67b57f261ef5ab14a | p@chr12:9560067..9560068, - |
| 1.75e-130 | FFCP PHASE1:Hg19::chr12:9560067..9560068,-#_c3255f62397c19b67b57f261ef5ab14a | p@chr12:9560067..9560068, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr6:165597253..165597261,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878 | p@chr6:165597253..165597261, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr6:165597253..165597261,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878 | p@chr6:165597253..165597261, - |
| 5.68e-99 | FFCP PHASE1:Hg19::chr12:100985946..100985951,+#_fe9e53ecff79bc7a9dfd9a3e8dcc2878 | p@chr12:100985946..100985951, + |
| 5.68e-99 | FFCP PHASE2:Hg19::chr12:100985946..100985951,+#_fe9e53ecff79bc7a9dfd9a3e8dcc2878 | p@chr12:100985946..100985951, + |
| 5.68e-99 | FFCP PHASE1:Hg19::chr7:100806199..100806216,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878 | p@chr7:100806199..100806216, - |
| 5.68e-99 | FFCP PHASE2:Hg19::chr7:100806199..100806216,-#_fe9e53ecff79bc7a9dfd9a3e8dcc2878 | p@chr7:100806199..100806216, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr22:22890694..22890704,-#_f52e895fba0bb7c54c51a8591a7869e9 | p8@PRAME |
| 9.38e-99 | FFCP PHASE2:Hg19::chr22:22890694..22890704,-#_f52e895fba0bb7c54c51a8591a7869e9 | p8@PRAME |
| 9.38e-99 | FFCP PHASE1:Hg19::chr6:165597175..165597184,-#_f52e895fba0bb7c54c51a8591a7869e9 | p@chr6:165597175..165597184, - |
| 9.38e-99 | FFCP PHASE2:Hg19::chr6:165597175..165597184,-#_f52e895fba0bb7c54c51a8591a7869e9 | p@chr6:165597175..165597184, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:105044082..105044088,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr8:105044082..105044088, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:144866839..144866843,-#_e8baf15439d907e4aa5e89abca2e8206 | p77@PDE4DIP |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:80116896..80116907,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:80116896..80116907, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:105044082..105044088,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr8:105044082..105044088, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:80116896..80116907,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:80116896..80116907, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:22216920..22216921,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:22216920..22216921, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:100805847..100805856,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100805847..100805856, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:144866845..144866850,-#_e8baf15439d907e4aa5e89abca2e8206 | p72@PDE4DIP |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:100805847..100805856,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100805847..100805856, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:34442315..34442323,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr16:34442315..34442323, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:144866845..144866850,-#_e8baf15439d907e4aa5e89abca2e8206 | p72@PDE4DIP |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:104418730..104418735,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:104418730..104418735, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:134871317..134871322,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr6:134871317..134871322, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:7576104..7576107,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr10:7576104..7576107, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:95165454..95165463,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr13:95165454..95165463, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:104418730..104418735,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:104418730..104418735, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:134871317..134871322,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr6:134871317..134871322, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:100807335..100807344,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100807335..100807344, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:22407849..22407853,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:22407849..22407853, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:100807335..100807344,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100807335..100807344, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:36536439..36536442,-#_e8baf15439d907e4aa5e89abca2e8206 | p3@ENST00000546376 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:144866760..144866765,-#_e8baf15439d907e4aa5e89abca2e8206 | p78@PDE4DIP |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:14869264..14869271,-#_e8baf15439d907e4aa5e89abca2e8206 | p27@FREM1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:144866760..144866765,-#_e8baf15439d907e4aa5e89abca2e8206 | p78@PDE4DIP |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:100806157..100806162,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100806157..100806162, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:100806157..100806162,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100806157..100806162, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:14869264..14869271,-#_e8baf15439d907e4aa5e89abca2e8206 | p27@FREM1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:22407849..22407853,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:22407849..22407853, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:234882762..234882776,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr2:234882762..234882776, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:22216863..22216869,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:22216863..22216869, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:104422480..104422488,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:104422480..104422488, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:34442315..34442323,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr16:34442315..34442323, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:144866830..144866835,-#_e8baf15439d907e4aa5e89abca2e8206 | p74@PDE4DIP |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:104422480..104422488,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:104422480..104422488, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:7576104..7576107,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr10:7576104..7576107, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:29898603..29898606,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:29898603..29898606, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:144866830..144866835,-#_e8baf15439d907e4aa5e89abca2e8206 | p74@PDE4DIP |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:95165454..95165463,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr13:95165454..95165463, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:234882762..234882776,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr2:234882762..234882776, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:19638023..19638028,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr19:19638023..19638028, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:105414888..105414895,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:105414888..105414895, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:22216920..22216921,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:22216920..22216921, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:22216863..22216869,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:22216863..22216869, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:105414888..105414895,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr9:105414888..105414895, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:19638023..19638028,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr19:19638023..19638028, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:104427340..104427345,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:104427340..104427345, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:100805828..100805836,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100805828..100805836, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:144866839..144866843,-#_e8baf15439d907e4aa5e89abca2e8206 | p77@PDE4DIP |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:100805828..100805836,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:100805828..100805836, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:104427340..104427345,-#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:104427340..104427345, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:36536439..36536442,-#_e8baf15439d907e4aa5e89abca2e8206 | p3@ENST00000546376 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:29898603..29898606,+#_e8baf15439d907e4aa5e89abca2e8206 | p@chr7:29898603..29898606, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr2:12455600..12455618,+#_2304ee776eef98108bc6352a5ab48d32 | p@chr2:12455600..12455618, + |
| 1.05e-79 | FFCP PHASE2:Hg19::chr2:12455600..12455618,+#_2304ee776eef98108bc6352a5ab48d32 | p@chr2:12455600..12455618, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr7:100807359..100807373,-#_2304ee776eef98108bc6352a5ab48d32 | p@chr7:100807359..100807373, - |
| 1.05e-79 | FFCP PHASE2:Hg19::chr7:100807359..100807373,-#_2304ee776eef98108bc6352a5ab48d32 | p@chr7:100807359..100807373, - |
| 1.05e-79 | FFCP PHASE1:Hg19::chr19:35890435..35890446,+#_2304ee776eef98108bc6352a5ab48d32 | p@chr19:35890435..35890446, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr6:165597234..165597249,-#_2304ee776eef98108bc6352a5ab48d32 | p@chr6:165597234..165597249, - |
