UBERON:0001174: Difference between revisions
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|located_in= | |located_in= | ||
|name=common bile duct | |name=common bile duct | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001173 | |part_of=UBERON:0001173 | ||
Latest revision as of 17:16, 12 September 2014
| Name: | common bile duct | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct] | ||
| Xrefs: |
| ||
| Synonyms: |
"ductus choledochus" RELATED LATIN [Wikipedia:Common_bile_duct] "ductus choledochus (biliaris)" EXACT [] | ||
| Alt_id: | UBERON:FMA_14667-MA_0001631 | ||
| Subset: |
uberon_slim vertebrate_core |
Digestive_system_showing_bile_duct.png]
200px-Digestive_system_showing_bile_duct.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003703(extrahepatic bile duct) |
|---|---|
| part_of: | UBERON:0001173(biliary tree) |
Children
| part of: | UBERON:0004913 (hepatopancreatic ampulla) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001174 (common bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr19:49545691..49545692,+#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr19:49545691..49545692, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:20093569..20093572,+#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr15:20093569..20093572, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:20093569..20093572,+#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr15:20093569..20093572, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:98807901..98807908,-#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr7:98807901..98807908, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:98807901..98807908,-#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr7:98807901..98807908, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:98796685..98796688,-#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr7:98796685..98796688, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:98796685..98796688,-#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr7:98796685..98796688, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr19:15923954..15923958,-#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr19:15923954..15923958, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:99779265..99779276,+#_876ac0d9d4a26dfd1831a5db7da3386c | p15@STAG3 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr19:15923954..15923958,-#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr19:15923954..15923958, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:99779265..99779276,+#_876ac0d9d4a26dfd1831a5db7da3386c | p15@STAG3 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr19:49545691..49545692,+#_876ac0d9d4a26dfd1831a5db7da3386c | p@chr19:49545691..49545692, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_27802b06543d4e4f95ecfb0d4c28c4fa | p@chr3:139035972..139036016, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_27802b06543d4e4f95ecfb0d4c28c4fa | p@chr3:139035972..139036016, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:49545646..49545652,+#_27802b06543d4e4f95ecfb0d4c28c4fa | p@chr19:49545646..49545652, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:49545646..49545652,+#_27802b06543d4e4f95ecfb0d4c28c4fa | p@chr19:49545646..49545652, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:98595103..98595105,-#_27802b06543d4e4f95ecfb0d4c28c4fa | p@chr7:98595103..98595105, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:98595103..98595105,-#_27802b06543d4e4f95ecfb0d4c28c4fa | p@chr7:98595103..98595105, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:30653778..30653783,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr22:30653778..30653783, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:150037547..150037552,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p10@RARRES2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:150037547..150037552,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p10@RARRES2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:23368290..23368299,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr13:23368290..23368299, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:61339609..61339610,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr20:61339609..61339610, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:30653778..30653783,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr22:30653778..30653783, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:98870980..98870981,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p8@MYH16 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:61339609..61339610,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr20:61339609..61339610, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:23368290..23368299,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr13:23368290..23368299, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:98870980..98870981,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p8@MYH16 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:40184895..40184905,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr2:40184895..40184905, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:40184895..40184905,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p@chr2:40184895..40184905, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:69867159..69867175,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p3@ENST00000528507 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:98870790..98870795,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p7@MYH16 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:69867159..69867175,-#_a1bde0b0bdc47767bf81458eedaa8ed4 | p3@ENST00000528507 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:98870790..98870795,+#_a1bde0b0bdc47767bf81458eedaa8ed4 | p7@MYH16 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr4:143369478..143369483,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr4:143369478..143369483, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr13:107026326..107026335, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr19:51462404..51462413,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr19:51462404..51462413, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr13:107026326..107026335, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr19:51462404..51462413,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr19:51462404..51462413, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr6:1054763..1054800,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr6:1054763..1054800, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr6:1054763..1054800,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr6:1054763..1054800, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr19:49545674..49545685,+#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr19:49545674..49545685, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr19:49545674..49545685,+#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr19:49545674..49545685, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr4:143369478..143369483,-#_ebff0e26e07a5a2a23b3fb9bfaba8833 | p@chr4:143369478..143369483, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:98870435..98870449,+#_1ef99cfbd3fcaf670d064ab712531f35 | p6@MYH16 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:170626681..170626687,+#_1ef99cfbd3fcaf670d064ab712531f35 | p@chr3:170626681..170626687, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:170626681..170626687,+#_1ef99cfbd3fcaf670d064ab712531f35 | p@chr3:170626681..170626687, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:98870435..98870449,+#_1ef99cfbd3fcaf670d064ab712531f35 | p6@MYH16 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:114885594..114885600,+#_501a6108f7673599a550c18463696218 | p@chr10:114885594..114885600, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr20:56234717..56234758,-#_501a6108f7673599a550c18463696218 | p@chr20:56234717..56234758, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr20:56234717..56234758,-#_501a6108f7673599a550c18463696218 | p@chr20:56234717..56234758, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:114885594..114885600,+#_501a6108f7673599a550c18463696218 | p@chr10:114885594..114885600, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr19:51471381..51471383,-#_620c929df3b4f6206f713f792140c9ff | p14@KLK6 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr7:98740685..98740699,-#_620c929df3b4f6206f713f792140c9ff | p@chr7:98740685..98740699, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:70636802..70636818,+#_620c929df3b4f6206f713f792140c9ff | p@chr17:70636802..70636818, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:70636802..70636818,+#_620c929df3b4f6206f713f792140c9ff | p@chr17:70636802..70636818, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr19:51471381..51471383,-#_620c929df3b4f6206f713f792140c9ff | p14@KLK6 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr7:98740685..98740699,-#_620c929df3b4f6206f713f792140c9ff | p@chr7:98740685..98740699, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr22:43343242..43343291,-#_1a645b82fd0b16343b22824b0bd64c37 | p20@PACSIN2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:98870934..98870947,+#_1a645b82fd0b16343b22824b0bd64c37 | p4@MYH16 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:5652876..5652885,-#_1a645b82fd0b16343b22824b0bd64c37 | p5@ENST00000425246 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:98870948..98870967,+#_1a645b82fd0b16343b22824b0bd64c37 | p3@MYH16 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr22:43343242..43343291,-#_1a645b82fd0b16343b22824b0bd64c37 | p20@PACSIN2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr7:98870948..98870967,+#_1a645b82fd0b16343b22824b0bd64c37 | p3@MYH16 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr6:128815342..128815347,-#_1a645b82fd0b16343b22824b0bd64c37 | p@chr6:128815342..128815347, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr6:128815342..128815347,-#_1a645b82fd0b16343b22824b0bd64c37 | p@chr6:128815342..128815347, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:5652876..5652885,-#_1a645b82fd0b16343b22824b0bd64c37 | p5@ENST00000425246 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr10:5501962..5501964,+#_1a645b82fd0b16343b22824b0bd64c37 | p@chr10:5501962..5501964, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr15:42186162..42186197,-#_1a645b82fd0b16343b22824b0bd64c37 | p1@SPTBN5 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr15:42186162..42186197,-#_1a645b82fd0b16343b22824b0bd64c37 | p1@SPTBN5 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr10:5501962..5501964,+#_1a645b82fd0b16343b22824b0bd64c37 | p@chr10:5501962..5501964, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr7:98870934..98870947,+#_1a645b82fd0b16343b22824b0bd64c37 | p4@MYH16 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr10:101691084..101691100,-#_1fb2457dd02803509e7323795a7c3a53 | p8@DNMBP |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:46954560..46954569,+#_1fb2457dd02803509e7323795a7c3a53 | p@chr1:46954560..46954569, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:46954560..46954569,+#_1fb2457dd02803509e7323795a7c3a53 | p@chr1:46954560..46954569, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr10:101691118..101691135,-#_1fb2457dd02803509e7323795a7c3a53 | p6@DNMBP |
| 6.58e-50 | FFCP PHASE2:Hg19::chr19:51523347..51523358,-#_1fb2457dd02803509e7323795a7c3a53 | p11@KLK10 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr19:51523347..51523358,-#_1fb2457dd02803509e7323795a7c3a53 | p11@KLK10 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr10:101691084..101691100,-#_1fb2457dd02803509e7323795a7c3a53 | p8@DNMBP |
| 6.58e-50 | FFCP PHASE1:Hg19::chr8:139755835..139755842,-#_1fb2457dd02803509e7323795a7c3a53 | p@chr8:139755835..139755842, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr10:101691118..101691135,-#_1fb2457dd02803509e7323795a7c3a53 | p6@DNMBP |
| 6.58e-50 | FFCP PHASE2:Hg19::chr8:139755835..139755842,-#_1fb2457dd02803509e7323795a7c3a53 | p@chr8:139755835..139755842, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr2:30440814..30440823,+#_98b997273fa80379c83e22ab2bf173cf | p@chr2:30440814..30440823, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_98b997273fa80379c83e22ab2bf173cf | p@chr10:30046722..30046725, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr2:30440814..30440823,+#_98b997273fa80379c83e22ab2bf173cf | p@chr2:30440814..30440823, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr9:132337391..132337396,+#_98b997273fa80379c83e22ab2bf173cf | p2@ENST00000443993, p2@uc004bya.1 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr10:5652892..5652903,-#_98b997273fa80379c83e22ab2bf173cf | p2@ENST00000425246 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr9:132337391..132337396,+#_98b997273fa80379c83e22ab2bf173cf | p2@ENST00000443993, p2@uc004bya.1 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:139253550..139253585,+#_98b997273fa80379c83e22ab2bf173cf | p@chr3:139253550..139253585, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:139253550..139253585,+#_98b997273fa80379c83e22ab2bf173cf | p@chr3:139253550..139253585, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr3:98671855..98671858,+#_98b997273fa80379c83e22ab2bf173cf | p@chr3:98671855..98671858, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr17:47091824..47091833,+#_98b997273fa80379c83e22ab2bf173cf | p@chr17:47091824..47091833, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr17:47091824..47091833,+#_98b997273fa80379c83e22ab2bf173cf | p@chr17:47091824..47091833, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr3:98671855..98671858,+#_98b997273fa80379c83e22ab2bf173cf | p@chr3:98671855..98671858, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_98b997273fa80379c83e22ab2bf173cf | p@chr10:30046722..30046725, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr10:5652892..5652903,-#_98b997273fa80379c83e22ab2bf173cf | p2@ENST00000425246 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr7:98805698..98805708,-#_98b997273fa80379c83e22ab2bf173cf | p@chr7:98805698..98805708, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr7:98805698..98805708,-#_98b997273fa80379c83e22ab2bf173cf | p@chr7:98805698..98805708, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr8:143317560..143317581,-#_7e46cfe6f4fd3e8a9d806c89a3617466 | p@chr8:143317560..143317581, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr8:143317560..143317581,-#_7e46cfe6f4fd3e8a9d806c89a3617466 | p@chr8:143317560..143317581, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
