UBERON:0001882: Difference between revisions
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|located_in= | |located_in= | ||
|name=nucleus accumbens | |name=nucleus accumbens | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000349;;UBERON:0001869;;UBERON:0005403 | |part_of=UBERON:0000349;;UBERON:0001869;;UBERON:0005403 | ||
Latest revision as of 17:22, 12 September 2014
| Name: | nucleus accumbens | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens] | ||
| Xrefs: |
| ||
| Synonyms: |
"accumbens nucleus" EXACT [] "colliculus of caudate nucleus" EXACT [] "nucleus accumbens septi" EXACT [] "nucleus accumbens septi" RELATED LATIN [Wikipedia:Nucleus_accumbens] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_61889-MA_0000892 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009663(telencephalic nucleus) |
|---|---|
| part_of: | UBERON:0000349(limbic system),UBERON:0001869(cerebral hemisphere),UBERON:0005403(ventral striatum) |
Children
| derives from: | FF:0010037 (human nucleus accumbens - adult sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001882 (nucleus accumbens), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr9:5304713..5304719,-#_4300241e37e1619e29e8460dbbc3d65c | p1@RLN2 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr9:19788870..19788880,+#_4300241e37e1619e29e8460dbbc3d65c | p@chr9:19788870..19788880, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr9:19788870..19788880,+#_4300241e37e1619e29e8460dbbc3d65c | p@chr9:19788870..19788880, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr9:5304713..5304719,-#_4300241e37e1619e29e8460dbbc3d65c | p1@RLN2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:18765490..18765499,-#_9c0f70db6329d1e6e36850951c33cff1 | p16@PTPN5 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:28075097..28075108,-#_9c0f70db6329d1e6e36850951c33cff1 | p7@GSG1L |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:28075097..28075108,-#_9c0f70db6329d1e6e36850951c33cff1 | p7@GSG1L |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:18765490..18765499,-#_9c0f70db6329d1e6e36850951c33cff1 | p16@PTPN5 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:229478819..229478822,-#_dde2b635b62edf9d05af3c65bd22119f | p8@C1orf96 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_dde2b635b62edf9d05af3c65bd22119f | p@chr3:63542313..63542321, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:229478819..229478822,-#_dde2b635b62edf9d05af3c65bd22119f | p8@C1orf96 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:54943367..54943368,+#_dde2b635b62edf9d05af3c65bd22119f | p9@PDE1B |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_dde2b635b62edf9d05af3c65bd22119f | p27@GNAL |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_dde2b635b62edf9d05af3c65bd22119f | p27@GNAL |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:54943367..54943368,+#_dde2b635b62edf9d05af3c65bd22119f | p9@PDE1B |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_dde2b635b62edf9d05af3c65bd22119f | p@chr3:63542313..63542321, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chrX:102663083..102663098, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p11@SCN8A |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr4:71945904..71945922, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr8:115354253..115354290, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr4:71945904..71945922, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p11@SCN8A |
| 4.66e-66 | FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr15:37777334..37777345, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr8:115354253..115354290, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr11:47617035..47617045, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chrX:102663083..102663098, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p2@DGKH |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:228399053..228399061,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr1:228399053..228399061, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr11:47617035..47617045, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:228399053..228399061,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr1:228399053..228399061, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p@chr15:37777334..37777345, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p22@PRLR |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p2@DGKH |
| 4.66e-66 | FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_9f0a14b6bcb95db0e5dacbf8e2f4dddf | p22@PRLR |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:63258167..63258182,-#_44cc96b3c0510cdf54ff7f97895bebe6 | p8@HRASLS5 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:63258167..63258182,-#_44cc96b3c0510cdf54ff7f97895bebe6 | p8@HRASLS5 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr4:8073763..8073768,-#_44cc96b3c0510cdf54ff7f97895bebe6 | p11@ABLIM2 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr4:8073763..8073768,-#_44cc96b3c0510cdf54ff7f97895bebe6 | p11@ABLIM2 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:22382780..22382797,-#_154979f6036cb1bae1de14dcff658a3d | p@chr7:22382780..22382797, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr11:47616996..47617008,-#_154979f6036cb1bae1de14dcff658a3d | p@chr11:47616996..47617008, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_154979f6036cb1bae1de14dcff658a3d | p@chr15:35546154..35546174, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_154979f6036cb1bae1de14dcff658a3d | p@chr14:78638610..78638621, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr2:173600459..173600464,+#_154979f6036cb1bae1de14dcff658a3d | p21@RAPGEF4 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr19:57269846..57269858,-#_154979f6036cb1bae1de14dcff658a3d | p@chr19:57269846..57269858, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr19:57269846..57269858,-#_154979f6036cb1bae1de14dcff658a3d | p@chr19:57269846..57269858, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr2:173600459..173600464,+#_154979f6036cb1bae1de14dcff658a3d | p21@RAPGEF4 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr11:47616996..47617008,-#_154979f6036cb1bae1de14dcff658a3d | p@chr11:47616996..47617008, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:4998664..4998674,-#_154979f6036cb1bae1de14dcff658a3d | p2@MMD2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:4998664..4998674,-#_154979f6036cb1bae1de14dcff658a3d | p2@MMD2 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr16:645297..645302,+#_154979f6036cb1bae1de14dcff658a3d | p@chr16:645297..645302, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_154979f6036cb1bae1de14dcff658a3d | p@chr14:78638610..78638621, + |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_154979f6036cb1bae1de14dcff658a3d | p@chr7:22382758..22382765, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:111424008..111424024,-#_154979f6036cb1bae1de14dcff658a3d | p@chr7:111424008..111424024, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr16:645297..645302,+#_154979f6036cb1bae1de14dcff658a3d | p@chr16:645297..645302, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_154979f6036cb1bae1de14dcff658a3d | p@chr7:22382758..22382765, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr7:22382780..22382797,-#_154979f6036cb1bae1de14dcff658a3d | p@chr7:22382780..22382797, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_154979f6036cb1bae1de14dcff658a3d | p@chr15:35546154..35546174, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr7:111424008..111424024,-#_154979f6036cb1bae1de14dcff658a3d | p@chr7:111424008..111424024, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr8:75564025..75564036,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr8:75564025..75564036, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p20@WIPF3 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr1:31352916..31352926, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:49375345..49375356,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr12:49375345..49375356, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:132091252..132091261,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p17@HS6ST2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:49375345..49375356,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr12:49375345..49375356, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr13:112726433..112726446, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chrX:85969610..85969619,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p4@DACH2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr14:71905629..71905640,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr14:71905629..71905640, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr21:45788960..45788972,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p12@TRPM2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr2:152828264..152828299, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:132091252..132091261,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p17@HS6ST2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr21:45788960..45788972,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p12@TRPM2 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr18:47967428..47967437, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr2:152828264..152828299, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chrX:85969610..85969619,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p4@DACH2 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr12:6031299..6031315, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr18:47967428..47967437, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr8:75564025..75564036,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr8:75564025..75564036, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr14:71905629..71905640,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr14:71905629..71905640, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p20@WIPF3 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr1:31352916..31352926, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr12:6031299..6031315, - |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_48ab3ebd223ef2178ebb0ca2c90e4676 | p@chr13:112726433..112726446, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr11:130011708..130011717,+#_5deeb9411efcabeda57b45a9ac88b3c1 | p18@APLP2 |
| 6.62e-41 | FFCP PHASE2:Hg19::chr11:130011708..130011717,+#_5deeb9411efcabeda57b45a9ac88b3c1 | p18@APLP2 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr12:11652913..11652927,+#_a10ecaf3d0dfc6191759ef1b11cf4a7a | p@chr12:11652913..11652927, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_a10ecaf3d0dfc6191759ef1b11cf4a7a | p23@KCNAB1 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_a10ecaf3d0dfc6191759ef1b11cf4a7a | p23@KCNAB1 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr1:35198521..35198523,-#_a10ecaf3d0dfc6191759ef1b11cf4a7a | p@chr1:35198521..35198523, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr1:35198521..35198523,-#_a10ecaf3d0dfc6191759ef1b11cf4a7a | p@chr1:35198521..35198523, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr12:11652913..11652927,+#_a10ecaf3d0dfc6191759ef1b11cf4a7a | p@chr12:11652913..11652927, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr3:57807798..57807809, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:143582357..143582366,-#_54022eca76e7feb4bfaf5cec7c93f4b5 | p9@FAM115A |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:145132414..145132428,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr6:145132414..145132428, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr3:57807798..57807809, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr10:97261874..97261887, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:143582357..143582366,-#_54022eca76e7feb4bfaf5cec7c93f4b5 | p9@FAM115A |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:145132414..145132428,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr6:145132414..145132428, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr20:9496091..9496106, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p@chr20:9496091..9496106, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_54022eca76e7feb4bfaf5cec7c93f4b5 | p2@BC051739 |
