Personal tools

UBERON:0005089: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=sweat gland placode
|name=sweat gland placode
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:50, 12 September 2014

Name:sweat gland placode
Namespace:FANTOM
Definition:"An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [GO:0060793]
Comments:todo - add bud

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0011814(non-neurogenic ectodermal placode)
develops_from:UBERON:0011272(embryonic skin basal layer)



Children

develops from:UBERON:0001820 (sweat gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005089 (sweat gland placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr1:153321274..153321283,-#_e53071ce90505a79f807f9a146ba5ecdp2@PGLYRP4
1.55e-98FFCP PHASE1:Hg19::chr1:153321274..153321283,-#_e53071ce90505a79f807f9a146ba5ecdp2@PGLYRP4
2.56e-98FFCP PHASE1:Hg19::chrY:7671916..7671924,-#_a65c1c77d418a33f06c3a41501e5c66bp@chrY:7671916..7671924, -
2.56e-98FFCP PHASE2:Hg19::chrY:7671916..7671924,-#_a65c1c77d418a33f06c3a41501e5c66bp@chrY:7671916..7671924, -
3.49e-79FFCP PHASE2:Hg19::chr17:19702846..19702866,-#_a661a78fd8d30e32515000790e596168p@chr17:19702846..19702866, -
3.49e-79FFCP PHASE1:Hg19::chr17:19702846..19702866,-#_a661a78fd8d30e32515000790e596168p@chr17:19702846..19702866, -
5.22e-79FFCP PHASE2:Hg19::chr1:207038965..207038969,+#_b1ff6253026dfb4508dbe785ac0e6a52p1@IL20
5.22e-79FFCP PHASE1:Hg19::chr1:207038965..207038969,+#_b1ff6253026dfb4508dbe785ac0e6a52p1@IL20
5.53e-66FFCP PHASE2:Hg19::chr6:12577789..12577820,-#_279187ad580cd60d0f80cad416dea774p@chr6:12577789..12577820, -
5.53e-66FFCP PHASE1:Hg19::chr6:12577789..12577820,-#_279187ad580cd60d0f80cad416dea774p@chr6:12577789..12577820, -
4.77e-57FFCP PHASE2:Hg19::chr10:118187325..118187332,+#_314da9787cddb3bd78b23b4fcb03a3dcp5@PNLIPRP3
4.77e-57FFCP PHASE1:Hg19::chr10:118187325..118187332,+#_314da9787cddb3bd78b23b4fcb03a3dcp5@PNLIPRP3
1.13e-56FFCP PHASE1:Hg19::chr9:27524485..27524505,+#_2bfe7cf3d8a14f955b4f72e6b62e8a88p2@IFNK
1.13e-56FFCP PHASE2:Hg19::chr9:27524485..27524505,+#_2bfe7cf3d8a14f955b4f72e6b62e8a88p2@IFNK
4.0e-50FFCP PHASE2:Hg19::chr8:22844791..22844808,+#_922d5a2461373b7db4d26baefebdf97bp16@RHOBTB2
4.0e-50FFCP PHASE1:Hg19::chr8:22844791..22844808,+#_922d5a2461373b7db4d26baefebdf97bp16@RHOBTB2
4.52e-50FFCP PHASE1:Hg19::chr5:150951045..150951053,-#_bb963f5d637bf391ec7b99b4a47fa337p@chr5:150951045..150951053, -
4.52e-50FFCP PHASE2:Hg19::chr12:122430653..122430662,+#_bb963f5d637bf391ec7b99b4a47fa337p@chr12:122430653..122430662, +
4.52e-50FFCP PHASE1:Hg19::chr12:122430653..122430662,+#_bb963f5d637bf391ec7b99b4a47fa337p@chr12:122430653..122430662, +
4.52e-50FFCP PHASE2:Hg19::chr15:42566576..42566581,+#_bb963f5d637bf391ec7b99b4a47fa337p18@GANC
4.52e-50FFCP PHASE1:Hg19::chr15:42566576..42566581,+#_bb963f5d637bf391ec7b99b4a47fa337p18@GANC
4.52e-50FFCP PHASE2:Hg19::chr5:150951045..150951053,-#_bb963f5d637bf391ec7b99b4a47fa337p@chr5:150951045..150951053, -
5.15e-50FFCP PHASE2:Hg19::chr2:238933920..238933935,+#_b4a6db54bb47851014a7cfac2f1ef347p7@UBE2F
5.15e-50FFCP PHASE1:Hg19::chr2:238933920..238933935,+#_b4a6db54bb47851014a7cfac2f1ef347p7@UBE2F
1.09e-49FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_3160a721176cdb4c0291434d6421292bp@chr7:121156367..121156370, -
1.09e-49FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_3160a721176cdb4c0291434d6421292bp@chr7:121156367..121156370, -
3.19e-45FFCP PHASE2:Hg19::chr18:9538358..9538360,+#_de32f2edf2cc899751974c4868723c16p@chr18:9538358..9538360, +
3.19e-45FFCP PHASE1:Hg19::chr18:9538358..9538360,+#_de32f2edf2cc899751974c4868723c16p@chr18:9538358..9538360, +
9.79e-45FFCP PHASE1:Hg19::chr9:117972180..117972191,+#_3d8d67b23d23c0faa226dbc5045b673fp@chr9:117972180..117972191, +
9.79e-45FFCP PHASE2:Hg19::chr9:117972180..117972191,+#_3d8d67b23d23c0faa226dbc5045b673fp@chr9:117972180..117972191, +
1.91e-44FFCP PHASE1:Hg19::chr10:47740297..47740299,+#_ab86d8344bd6ed00f6d3a971d858f84fp1@FAM25HP
1.91e-44FFCP PHASE2:Hg19::chr10:47740297..47740299,+#_ab86d8344bd6ed00f6d3a971d858f84fp1@FAM25HP
1.34e-40FFCP PHASE2:Hg19::chr3:189654013..189654016,-#_07e267ebafce97a9fda391d72901c387p@chr3:189654013..189654016, -
1.34e-40FFCP PHASE2:Hg19::chr7:97984729..97984742,-#_07e267ebafce97a9fda391d72901c387p14@BAIAP2L1
1.34e-40FFCP PHASE1:Hg19::chr3:189654013..189654016,-#_07e267ebafce97a9fda391d72901c387p@chr3:189654013..189654016, -
1.34e-40FFCP PHASE1:Hg19::chr7:97984729..97984742,-#_07e267ebafce97a9fda391d72901c387p14@BAIAP2L1
2.01e-40FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_5dc4844fa9a8d77981fcd203ad8c6636p@chr2:131669803..131669810, +
2.01e-40FFCP PHASE2:Hg19::chr17:38652332..38652344,-#_5dc4844fa9a8d77981fcd203ad8c6636p18@TNS4
2.01e-40FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_5dc4844fa9a8d77981fcd203ad8c6636p@chr2:131669803..131669810, +
2.01e-40FFCP PHASE1:Hg19::chr17:38652332..38652344,-#_5dc4844fa9a8d77981fcd203ad8c6636p18@TNS4
2.46e-40FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_d18ca6dffe633c0b1db989589c78932fp1@IFNK
2.46e-40FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_d18ca6dffe633c0b1db989589c78932fp1@IFNK
5.49e-40FFCP PHASE2:Hg19::chr5:134906500..134906526,+#_11eb39af1f52287716a61a84382b15c4p@chr5:134906500..134906526, +
5.49e-40FFCP PHASE1:Hg19::chr5:134906500..134906526,+#_11eb39af1f52287716a61a84382b15c4p@chr5:134906500..134906526, +
1.89e-37FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_1ecfa2b1a0ed501dc8aa89838ccde5cap@chr5:167247103..167247112, +
1.89e-37FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_1ecfa2b1a0ed501dc8aa89838ccde5cap@chr5:167247103..167247112, +
4.73e-37FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_fd23fa3ac2901e957ea268cdb0ae6beap@chr5:52619638..52619641, +
4.73e-37FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_fd23fa3ac2901e957ea268cdb0ae6beap@chr5:52619638..52619641, +
1.18e-36FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_3225180b38a5418fa830106e7524fd32p7@LYPD5
1.18e-36FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_3225180b38a5418fa830106e7524fd32p7@LYPD5
1.42e-36FFCP PHASE2:Hg19::chr14:51955760..51955769,+#_0cbcb4e817d809c4f6a9a2578ee2a53fp29@FRMD6
1.42e-36FFCP PHASE1:Hg19::chr14:51955760..51955769,+#_0cbcb4e817d809c4f6a9a2578ee2a53fp29@FRMD6
1.7e-36FFCP PHASE2:Hg19::chr2:213770576..213770587,+#_272eb300dcf6a02b28c3df5f981eff2cp@chr2:213770576..213770587, +
1.7e-36FFCP PHASE1:Hg19::chr2:213770576..213770587,+#_272eb300dcf6a02b28c3df5f981eff2cp@chr2:213770576..213770587, +
2.04e-36FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_35d4ba4fa6fda4b66548c0308d47b712p@chr13:30259768..30259777, +
2.04e-36FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_35d4ba4fa6fda4b66548c0308d47b712p@chr13:30259768..30259777, +
2.45e-36FFCP PHASE1:Hg19::chr2:62257232..62257274,+#_0b5303301c06b9201396abd6d054c6c2p@chr2:62257232..62257274, +
2.45e-36FFCP PHASE2:Hg19::chr2:62257232..62257274,+#_0b5303301c06b9201396abd6d054c6c2p@chr2:62257232..62257274, +
3.61e-34FFCP PHASE2:Hg19::chr5:93905715..93905716,+#_ceb76264c8b62bf309611cca2c361a03p2@uc003kkq.1
3.61e-34FFCP PHASE1:Hg19::chr5:93905715..93905716,+#_ceb76264c8b62bf309611cca2c361a03p2@uc003kkq.1
5.04e-34FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_626a8ea189b8e629b1df20fd14e4e085p@chr16:57954541..57954548, -
5.04e-34FFCP PHASE1:Hg19::chr5:64400723..64400730,-#_626a8ea189b8e629b1df20fd14e4e085p@chr5:64400723..64400730, -
5.04e-34FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_626a8ea189b8e629b1df20fd14e4e085p@chr16:57954541..57954548, -
5.04e-34FFCP PHASE2:Hg19::chr5:64400723..64400730,-#_626a8ea189b8e629b1df20fd14e4e085p@chr5:64400723..64400730, -
7.05e-34FFCP PHASE1:Hg19::chr7:17719182..17719193,-#_51dad5f1037ee2aa51d40656713f4a2ep@chr7:17719182..17719193, -
7.05e-34FFCP PHASE1:Hg19::chr19:1611369..1611372,-#_51dad5f1037ee2aa51d40656713f4a2ep13@TCF3
7.05e-34FFCP PHASE2:Hg19::chr4:87770064..87770069,-#_51dad5f1037ee2aa51d40656713f4a2ep13@SLC10A6
7.05e-34FFCP PHASE2:Hg19::chr7:17719182..17719193,-#_51dad5f1037ee2aa51d40656713f4a2ep@chr7:17719182..17719193, -
7.05e-34FFCP PHASE1:Hg19::chr4:87770064..87770069,-#_51dad5f1037ee2aa51d40656713f4a2ep13@SLC10A6
7.05e-34FFCP PHASE2:Hg19::chr4:44963669..44963674,+#_51dad5f1037ee2aa51d40656713f4a2ep@chr4:44963669..44963674, +
7.05e-34FFCP PHASE1:Hg19::chr4:44963669..44963674,+#_51dad5f1037ee2aa51d40656713f4a2ep@chr4:44963669..44963674, +
7.05e-34FFCP PHASE2:Hg19::chr19:1611369..1611372,-#_51dad5f1037ee2aa51d40656713f4a2ep13@TCF3
1.17e-33FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_2bd920449c6867a094bcac369b8cd495p17@PTHLH
1.17e-33FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_2bd920449c6867a094bcac369b8cd495p17@PTHLH
1.39e-33FFCP PHASE2:Hg19::chr16:69145093..69145094,+#_0d7d4b55cfb6d6b65dbc4c1365cd342ap@chr16:69145093..69145094, +
1.39e-33FFCP PHASE1:Hg19::chr16:69145093..69145094,+#_0d7d4b55cfb6d6b65dbc4c1365cd342ap@chr16:69145093..69145094, +
2.29e-33FFCP PHASE1:Hg19::chr11:128812910..128812927,-#_25c8fa2116ed02bf8a128920de9868dep2@TP53AIP1
2.29e-33FFCP PHASE2:Hg19::chr11:128812910..128812927,-#_25c8fa2116ed02bf8a128920de9868dep2@TP53AIP1
7.33e-32FFCP PHASE2:Hg19::chr17:38120375..38120394,+#_edb6cd6e4cd9de24de296098a8b1c6fbp@chr17:38120375..38120394, +
7.33e-32FFCP PHASE1:Hg19::chr17:38120375..38120394,+#_edb6cd6e4cd9de24de296098a8b1c6fbp@chr17:38120375..38120394, +
1.87e-31FFCP PHASE1:Hg19::chr17:60782123..60782133,+#_df75f2c152277808cf0e2e2d5f083c3dp@chr17:60782123..60782133, +
1.87e-31FFCP PHASE2:Hg19::chr17:60782123..60782133,+#_df75f2c152277808cf0e2e2d5f083c3dp@chr17:60782123..60782133, +
4.04e-31FFCP PHASE2:Hg19::chr11:72295793..72295812,-#_8eef0dcd9c55480f7f2b228105e12f18p9@PDE2A
4.04e-31FFCP PHASE1:Hg19::chr11:72295793..72295812,-#_8eef0dcd9c55480f7f2b228105e12f18p9@PDE2A
2.22e-29FFCP PHASE2:Hg19::chr21:44957855..44957891,-#_f2b851dd260d9e0ab70d89cf0413f8e4p@chr21:44957855..44957891, -
2.22e-29FFCP PHASE1:Hg19::chr21:44957855..44957891,-#_f2b851dd260d9e0ab70d89cf0413f8e4p@chr21:44957855..44957891, -
2.56e-29FFCP PHASE1:Hg19::chr17:80037380..80037391,-#_bc50b2255183357cc2b9796dfc981c1dp6@BC065179
2.56e-29FFCP PHASE2:Hg19::chr17:80037380..80037391,-#_bc50b2255183357cc2b9796dfc981c1dp6@BC065179
3.41e-29FFCP PHASE2:Hg19::chr5:167247213..167247223,+#_c26fb5e410b3f577a645fd407ec6703ep@chr5:167247213..167247223, +
3.41e-29FFCP PHASE1:Hg19::chr5:167247213..167247223,+#_c26fb5e410b3f577a645fd407ec6703ep@chr5:167247213..167247223, +
6.06e-29FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_6a96ed86687a93faf37547923005605fp2@HEPHL1
6.06e-29FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_6a96ed86687a93faf37547923005605fp2@HEPHL1
8.13e-28FFCP PHASE1:Hg19::chr7:40883521..40883532,+#_1dd13ddfcfa2728a522fd19ca785eacbp@chr7:40883521..40883532, +
8.13e-28FFCP PHASE2:Hg19::chr7:40883521..40883532,+#_1dd13ddfcfa2728a522fd19ca785eacbp@chr7:40883521..40883532, +
1.22e-27FFCP PHASE2:Hg19::chr5:111445067..111445085,-#_bf40636e6db85cbb6045e32906c5d44bp@chr5:111445067..111445085, -
1.22e-27FFCP PHASE1:Hg19::chr5:111445067..111445085,-#_bf40636e6db85cbb6045e32906c5d44bp@chr5:111445067..111445085, -
1.6e-27FFCP PHASE2:Hg19::chr7:157086249..157086269,-#_8dc24229126a59fb4aaa0e4407bcb337p@chr7:157086249..157086269, -
1.6e-27FFCP PHASE1:Hg19::chr7:157086249..157086269,-#_8dc24229126a59fb4aaa0e4407bcb337p@chr7:157086249..157086269, -
1.6e-27FFCP PHASE2:Hg19::chr1:209601525..209601530,+#_8dc24229126a59fb4aaa0e4407bcb337p@chr1:209601525..209601530, +
1.6e-27FFCP PHASE1:Hg19::chr1:209601525..209601530,+#_8dc24229126a59fb4aaa0e4407bcb337p@chr1:209601525..209601530, +