Personal tools

Data source: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 27: Line 27:
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ mouse]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ mouse]
* GOStat results on Coexpression module
* GOStat results on Coexpression module
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19_co-expression_GOstats.tar.gz human]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19_co-expression_GOstats.tar.gz human]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/mm9_co-expression_GOstats.tar.gz mouse]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9_co-expression_GOstats.tar.gz mouse]
* Pathway enrichment analysis
* Pathway enrichment analysis
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19_co-expression_modules.tar.gz human]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19_co-expression_modules.tar.gz human]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/mm9_co-expression_modules.tar.gz mouse]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9_co-expression_modules.tar.gz mouse]
* TFBS overrepresentation
* TFBS overrepresentation
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19.novel_motif.coexpression_clusters_overrepresentation.txt.gz human_novel_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19.novel_motif.coexpression_clusters_overrepresentation.txt.gz human_novel_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz human_jaspar_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/hg19.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz human_jaspar_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/mm9.novel_motif.coexpression_clusters_overrepresentation.txt.gz mouse_novel_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz mouse_novel_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/mm9.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz  mouse_jaspar_motif]
** [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/mm9.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz  mouse_jaspar_motif]
* [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/ENCODE_TF_ChIP-seq_peak_enrichment_coexprclusterencode.filtered.csv.gz ENCODE_TF_ChIP-seq_peak enrichment analysis]
* [http://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Co-expression_clusters/ENCODE_TF_ChIP-seq_peak_enrichment_coexprclusterencode.filtered.csv.gz ENCODE_TF_ChIP-seq_peak enrichment analysis]

Revision as of 16:52, 12 February 2015

Data sources used in FANTOM5 SSTAR


CAGE peaks

  • CAGE peak location (with the robust threshold) , annotation, and expression
  • Ontology-based sample term enrichment analysis

Genes

Coexpression module

Motifs

  • Novel motifs GREAT analysis results
  • Novel motifs Significance of the correlation with CAGE expression
  • Jaspar motifs Significance of the correlation with CAGE expression

Sample

Ontology

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Data_source&oldid=3288856"