FFCP PHASE2:Hg19::chr1:2323260..2323307,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:11079 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:30309 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=11079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=30309 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=O15258,Q5T093,Q9P0H9 | ||
|association_with_transcript=0bp_to_ENST00000306256,ENST00000378513,ENST00000378518,ENST00000434662,ENST00000493207_5end | |association_with_transcript=0bp_to_ENST00000306256,ENST00000378513,ENST00000378518,ENST00000434662,ENST00000493207_5end | ||
|cluster_id=chr1:2323260..2323307,+ | |cluster_id=chr1:2323260..2323307,+ |
Latest revision as of 08:45, 16 September 2015
Short description: | p1@RER1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RER1_5end |
Coexpression cluster: | C562_Smooth_Fibroblast_Preadipocyte_Hepatic_Alveolar_Adipocyte_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000306256, ENST00000378513, ENST00000378518, ENST00000434662, ENST00000493207_5end |
EntrezGene: | RER1 |
HGNC: | 30309 |
UniProt: | O15258Q5T093Q9P0H9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@RER1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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mesodermal cell | 9.99e-21 | 121 |
muscle precursor cell | 2.67e-19 | 58 |
myoblast | 2.67e-19 | 58 |
multi-potent skeletal muscle stem cell | 2.67e-19 | 58 |
muscle cell | 1.84e-18 | 55 |
smooth muscle cell | 2.91e-17 | 43 |
smooth muscle myoblast | 2.91e-17 | 43 |
fibroblast | 3.01e-17 | 76 |
embryonic cell | 1.46e-15 | 250 |
electrically responsive cell | 4.83e-15 | 61 |
Showing 1 to 10 of 15 entries
Ontology term | p-value | n |
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epithelial vesicle | 4.81e-22 | 78 |
somite | 2.38e-19 | 71 |
presomitic mesoderm | 2.38e-19 | 71 |
presumptive segmental plate | 2.38e-19 | 71 |
dermomyotome | 2.38e-19 | 71 |
trunk paraxial mesoderm | 2.38e-19 | 71 |
dense mesenchyme tissue | 9.81e-19 | 73 |
multilaminar epithelium | 1.13e-18 | 83 |
paraxial mesoderm | 1.52e-18 | 72 |
presumptive paraxial mesoderm | 1.52e-18 | 72 |
Showing 1 to 10 of 44 entries