CL:0000723: Difference between revisions
From FANTOM5_SSTAR
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|def="A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103]...") |
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Revision as of 17:38, 15 June 2012
| Name: | somatic stem cell | |
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| Namespace: | cell | |
| Definition: | "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103] | |
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Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000034(stem cell),CL:0002371(somatic cell) |
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Children
| is a: | CL:0000035 (single fate stem cell),CL:0000048 (multi fate stem cell),CL:0002248 (pluripotent stem cell),CL:1000428 (stem cell of epidermis) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10447-106F6
- 10568-108B1 (mesenchymal stem cell line:Hu5/E18)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11217-116B2 (Mesenchymal stem cells - adipose, donor0)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
... further results Mouse (Mus musculus)
- 10447-106F6
- 10568-108B1 (mesenchymal stem cell line:Hu5/E18)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11217-116B2 (Mesenchymal stem cells - adipose, donor0)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000723 (somatic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
