CL:0002057: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002057
|name=CD14-positive, CD16-negative classical monocyte
|namespace=cell
|def="A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-posit...") |
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|name=CD14-positive, CD16-negative classical monocyte | |name=CD14-positive, CD16-negative classical monocyte | ||
|namespace= | |namespace=efo | ||
|def="A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341] | |def="A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341] | ||
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
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Revision as of 17:39, 15 June 2012
| Name: | CD14-positive, CD16-negative classical monocyte |
|---|---|
| Namespace: | efo |
| Definition: | "A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341] |
| Comments: | Markers are associated with human monocytes. |
| Created by: | tmeehan |
| Creation date: | 2010-06-05T08:25:41Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000860(classical monocyte) |
|---|
Children
| derives from: | FF:0011101 (human CD14-positive monocytes - mock treated sample),FF:0011102 (human CD14-positive monocytes - treated with B-glucan sample),FF:0011103 (human CD14-positive monocytes - treated with BCG sample),FF:0011104 (human CD14-positive monocytes - treated with Candida sample),FF:0011105 (human CD14-positive monocytes - treated with Cryptococcus sample),FF:0011106 (human CD14-positive monocytes - treated with Group A streptococci sample),FF:0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample),FF:0011109 (human CD14-positive monocytes - treated with Salmonella sample),FF:0011111 (human CD14-positive CD16-negative Monocytes sample),FF:0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample),FF:0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample) |
|---|---|
| develops from: | CL:0002397 (CD14-positive, CD16-positive monocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11788-124B6 (CD14+CD16- Monocytes, donor1)
- 11799-124C8 (CD14+CD16- Monocytes, donor2)
- 11857-125A3
- 11858-125A4
- 11859-125A5
- 11860-125A6 (CD14+ monocytes - treated with BCG, donor1)
- 11861-125A7 (CD14+ monocytes - treated with IFN + N-hexane, donor1)
- 11862-125A8 (CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1)
- 11863-125A9 (CD14+ monocytes - mock treated, donor1)
- 11864-125B1 (CD14+ monocytes - treated with Group A streptococci, donor1)
... further results Mouse (Mus musculus)
- 11788-124B6 (CD14+CD16- Monocytes, donor1)
- 11799-124C8 (CD14+CD16- Monocytes, donor2)
- 11857-125A3
- 11858-125A4
- 11859-125A5
- 11860-125A6 (CD14+ monocytes - treated with BCG, donor1)
- 11861-125A7 (CD14+ monocytes - treated with IFN + N-hexane, donor1)
- 11862-125A8 (CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1)
- 11863-125A9 (CD14+ monocytes - mock treated, donor1)
- 11864-125B1 (CD14+ monocytes - treated with Group A streptococci, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002057 (CD14-positive, CD16-negative classical monocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.95e-173 | FFCP PHASE1:Hg19::chr7:44661060..44661101,-#_22afa9f147739011778d4e78fb8e86fc | p@chr7:44661060..44661101, - |
| 2.95e-173 | FFCP PHASE2:Hg19::chr7:44661060..44661101,-#_22afa9f147739011778d4e78fb8e86fc | p@chr7:44661060..44661101, - |
| 5.66e-173 | FFCP PHASE2:Hg19::chr17:72628050..72628077,-#_5031cdabd9f16414c47b3aab75834961 | p@chr17:72628050..72628077, - |
| 5.66e-173 | FFCP PHASE1:Hg19::chr17:72628050..72628077,-#_5031cdabd9f16414c47b3aab75834961 | p@chr17:72628050..72628077, - |
| 3.48e-171 | FFCP PHASE1:Hg19::chr17:72607002..72607029,+#_1149a9858c74307203edeecc54cc7a0c | p@chr17:72607002..72607029, + |
| 3.48e-171 | FFCP PHASE2:Hg19::chr17:72607002..72607029,+#_1149a9858c74307203edeecc54cc7a0c | p@chr17:72607002..72607029, + |
| 2.61e-167 | FFCP PHASE2:Hg19::chr17:72606825..72606838,-#_920652704d9b1782694e5aed8be1dfd2 | p@chr17:72606825..72606838, - |
| 2.61e-167 | FFCP PHASE1:Hg19::chr17:72606825..72606838,-#_920652704d9b1782694e5aed8be1dfd2 | p@chr17:72606825..72606838, - |
| 1.41e-166 | FFCP PHASE2:Hg19::chr17:72607152..72607174,-#_b25b34adcdba43e53d77079996f2a541 | p@chr17:72607152..72607174, - |
| 1.41e-166 | FFCP PHASE1:Hg19::chr17:72607152..72607174,-#_b25b34adcdba43e53d77079996f2a541 | p@chr17:72607152..72607174, - |
| 1.31e-165 | FFCP PHASE2:Hg19::chr17:72607351..72607373,-#_789757a9a6ea839876e5c79936ca7dc4 | p@chr17:72607351..72607373, - |
| 1.31e-165 | FFCP PHASE1:Hg19::chr17:72607351..72607373,-#_789757a9a6ea839876e5c79936ca7dc4 | p@chr17:72607351..72607373, - |
| 8.2e-165 | FFCP PHASE1:Hg19::chr1:120593738..120593745,+#_0c72f755f17fa0abb439f6f7434a0ed1 | p@chr1:120593738..120593745, + |
| 8.2e-165 | FFCP PHASE2:Hg19::chr1:120593738..120593745,+#_0c72f755f17fa0abb439f6f7434a0ed1 | p@chr1:120593738..120593745, + |
| 1.7e-164 | FFCP PHASE1:Hg19::chr14:55249943..55249971,+#_ea7f750482939580e6991779295c4ffe | p@chr14:55249943..55249971, + |
| 1.7e-164 | FFCP PHASE2:Hg19::chr14:55249943..55249971,+#_ea7f750482939580e6991779295c4ffe | p@chr14:55249943..55249971, + |
| 6.24e-163 | FFCP PHASE2:Hg19::chr8:11754835..11754867,-#_1a85c21058f7f1478bf61d4708a18735 | p1@ENST00000525252 |
| 6.24e-163 | FFCP PHASE1:Hg19::chr8:11754835..11754867,-#_1a85c21058f7f1478bf61d4708a18735 | p1@ENST00000525252 |
| 2.9e-162 | FFCP PHASE1:Hg19::chr12:125197870..125197907,+#_02abadb934cf0b30e50a4b3f86adec77 | p@chr12:125197870..125197907, + |
| 2.9e-162 | FFCP PHASE2:Hg19::chr12:125197870..125197907,+#_02abadb934cf0b30e50a4b3f86adec77 | p@chr12:125197870..125197907, + |
| 2.93e-162 | FFCP PHASE1:Hg19::chr17:72606678..72606702,-#_d1e6c733ef1257015c390bffb7786e82 | p@chr17:72606678..72606702, - |
| 2.93e-162 | FFCP PHASE2:Hg19::chr17:72606678..72606702,-#_d1e6c733ef1257015c390bffb7786e82 | p@chr17:72606678..72606702, - |
| 3.23e-162 | FFCP PHASE2:Hg19::chr22:17717917..17717939,-#_6857c8912e1224a02cff65382760876f | p@chr22:17717917..17717939, - |
| 3.23e-162 | FFCP PHASE1:Hg19::chr22:17717917..17717939,-#_6857c8912e1224a02cff65382760876f | p@chr22:17717917..17717939, - |
| 4.13e-162 | FFCP PHASE2:Hg19::chr5:156534439..156534470,+#_fce8dfee879118a97da5c10f04da6aba | p@chr5:156534439..156534470, + |
| 4.13e-162 | FFCP PHASE1:Hg19::chr5:156534439..156534470,+#_fce8dfee879118a97da5c10f04da6aba | p@chr5:156534439..156534470, + |
| 1.23e-161 | FFCP PHASE1:Hg19::chr9:137300477..137300490,+#_08c074f810217b16ac511c064681a810 | p@chr9:137300477..137300490, + |
| 1.23e-161 | FFCP PHASE2:Hg19::chr9:137300477..137300490,+#_08c074f810217b16ac511c064681a810 | p@chr9:137300477..137300490, + |
| 6.16e-160 | FFCP PHASE2:Hg19::chr1:149901972..149901989,-#_2a06eae5b652091f329a5c1373925156 | p@chr1:149901972..149901989, - |
| 6.16e-160 | FFCP PHASE1:Hg19::chr1:149901972..149901989,-#_2a06eae5b652091f329a5c1373925156 | p@chr1:149901972..149901989, - |
| 3.22e-159 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_3f00d95f06ca5b385a69efb8457d8c37 | p2@ZEB2-AS1 |
| 3.22e-159 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_3f00d95f06ca5b385a69efb8457d8c37 | p2@ZEB2-AS1 |
| 4.01e-159 | FFCP PHASE1:Hg19::chr11:68847955..68847972,-#_a0870690a18bf5b9cbc943211a464bd7 | p@chr11:68847955..68847972, - |
| 4.01e-159 | FFCP PHASE2:Hg19::chr11:68847955..68847972,-#_a0870690a18bf5b9cbc943211a464bd7 | p@chr11:68847955..68847972, - |
| 1.14e-158 | FFCP PHASE2:Hg19::chr11:68847043..68847057,+#_3d51ff7e57cde12eef99a9417b9454d9 | p@chr11:68847043..68847057, + |
| 1.14e-158 | FFCP PHASE1:Hg19::chr11:68847043..68847057,+#_3d51ff7e57cde12eef99a9417b9454d9 | p@chr11:68847043..68847057, + |
| 5.8e-158 | FFCP PHASE2:Hg19::chr1:108592890..108592921,-#_074603cb9e2dc2482d7fa81189809bac | p@chr1:108592890..108592921, - |
| 5.8e-158 | FFCP PHASE1:Hg19::chr1:108592890..108592921,-#_074603cb9e2dc2482d7fa81189809bac | p@chr1:108592890..108592921, - |
| 2.44e-157 | FFCP PHASE1:Hg19::chr7:949680..949694,-#_49d606713c62ceb683137acf8cf1e396 | p@chr7:949680..949694, - |
| 2.44e-157 | FFCP PHASE2:Hg19::chr7:949680..949694,-#_49d606713c62ceb683137acf8cf1e396 | p@chr7:949680..949694, - |
| 4.86e-157 | FFCP PHASE2:Hg19::chr7:48009999..48010016,+#_61b7747d0f1e0d0f4bbb9a8310722492 | p@chr7:48009999..48010016, + |
| 4.86e-157 | FFCP PHASE1:Hg19::chr7:48009999..48010016,+#_61b7747d0f1e0d0f4bbb9a8310722492 | p@chr7:48009999..48010016, + |
| 5.49e-157 | FFCP PHASE2:Hg19::chr4:185314351..185314392,+#_a8344e94bd578151b51d05678c915435 | p@chr4:185314351..185314392, + |
| 5.49e-157 | FFCP PHASE1:Hg19::chr4:185314351..185314392,+#_a8344e94bd578151b51d05678c915435 | p@chr4:185314351..185314392, + |
| 8.29e-157 | FFCP PHASE2:Hg19::chr16:82229835..82229848,+#_ff512b36cbd0038c3e03c559b732c838 | p@chr16:82229835..82229848, + |
| 8.29e-157 | FFCP PHASE1:Hg19::chr16:82229835..82229848,+#_ff512b36cbd0038c3e03c559b732c838 | p@chr16:82229835..82229848, + |
| 2.1e-156 | FFCP PHASE2:Hg19::chr20:5634031..5634046,+#_570ce5639ca79857c6ce8fb41c270235 | p@chr20:5634031..5634046, + |
| 2.1e-156 | FFCP PHASE1:Hg19::chr20:5634031..5634046,+#_570ce5639ca79857c6ce8fb41c270235 | p@chr20:5634031..5634046, + |
| 4.29e-156 | FFCP PHASE2:Hg19::chr4:159731607..159731627,+#_367c3767ee4733ffa2686bef9a960566 | p@chr4:159731607..159731627, + |
| 4.29e-156 | FFCP PHASE1:Hg19::chr4:159731607..159731627,+#_367c3767ee4733ffa2686bef9a960566 | p@chr4:159731607..159731627, + |
| 1.66e-155 | FFCP PHASE1:Hg19::chr9:102353301..102353315,-#_ec2341076c23c741f54624dc03de1ec9 | p@chr9:102353301..102353315, - |
| 1.66e-155 | FFCP PHASE2:Hg19::chr9:102353301..102353315,-#_ec2341076c23c741f54624dc03de1ec9 | p@chr9:102353301..102353315, - |
| 3.6e-155 | FFCP PHASE1:Hg19::chr2:145450907..145450928,-#_b569d489d78b8ff52e104589fbef7423 | p@chr2:145450907..145450928, - |
| 3.6e-155 | FFCP PHASE2:Hg19::chr2:145450907..145450928,-#_b569d489d78b8ff52e104589fbef7423 | p@chr2:145450907..145450928, - |
| 3.76e-155 | FFCP PHASE2:Hg19::chr17:72628206..72628246,+#_e296b31fbff6497d31fe5386b1ae0f39 | p@chr17:72628206..72628246, + |
| 3.76e-155 | FFCP PHASE1:Hg19::chr17:72628206..72628246,+#_e296b31fbff6497d31fe5386b1ae0f39 | p@chr17:72628206..72628246, + |
| 1.6e-154 | FFCP PHASE2:Hg19::chr8:11755021..11755054,+#_6dbd73dc9cc72f5d9f7ed2ed3253d241 | p@chr8:11755021..11755054, + |
| 1.6e-154 | FFCP PHASE1:Hg19::chr8:11755021..11755054,+#_6dbd73dc9cc72f5d9f7ed2ed3253d241 | p@chr8:11755021..11755054, + |
| 1.99e-154 | FFCP PHASE2:Hg19::chr2:145421047..145421067,+#_9c15f60f2147874652002f8d89bce4cf | p@chr2:145421047..145421067, + |
| 1.99e-154 | FFCP PHASE1:Hg19::chr2:145421047..145421067,+#_9c15f60f2147874652002f8d89bce4cf | p@chr2:145421047..145421067, + |
| 4.18e-154 | FFCP PHASE2:Hg19::chr6:106348152..106348164,+#_66cf2afdb3d8ba2f13fb21a1475f7dd3 | p@chr6:106348152..106348164, + |
| 4.18e-154 | FFCP PHASE1:Hg19::chr6:106348152..106348164,+#_66cf2afdb3d8ba2f13fb21a1475f7dd3 | p@chr6:106348152..106348164, + |
| 9.99e-154 | FFCP PHASE1:Hg19::chr16:17469894..17469904,+#_c754605fb66ffca3f0515d81db029ef2 | p@chr16:17469894..17469904, + |
| 9.99e-154 | FFCP PHASE2:Hg19::chr16:17469894..17469904,+#_c754605fb66ffca3f0515d81db029ef2 | p@chr16:17469894..17469904, + |
| 1.29e-153 | FFCP PHASE1:Hg19::chr1:40006573..40006589,-#_01b631deab7019aa5e44083a2c9c816f | p@chr1:40006573..40006589, - |
| 1.29e-153 | FFCP PHASE2:Hg19::chr1:40006573..40006589,-#_01b631deab7019aa5e44083a2c9c816f | p@chr1:40006573..40006589, - |
| 1.38e-153 | FFCP PHASE1:Hg19::chr7:111720716..111720750,+#_04299f4de0a05a962a0f8496a23a5818 | p@chr7:111720716..111720750, + |
| 1.38e-153 | FFCP PHASE2:Hg19::chr7:111720716..111720750,+#_04299f4de0a05a962a0f8496a23a5818 | p@chr7:111720716..111720750, + |
| 1.95e-153 | FFCP PHASE2:Hg19::chr3:128943968..128943986,+#_33509fd9a650e9aefc093fbe0accef0f | p@chr3:128943968..128943986, + |
| 1.95e-153 | FFCP PHASE1:Hg19::chr3:128943968..128943986,+#_33509fd9a650e9aefc093fbe0accef0f | p@chr3:128943968..128943986, + |
| 3.44e-153 | FFCP PHASE2:Hg19::chr2:58339774..58339779,-#_44826a13236192cb3f9b0189f536e638 | p@chr2:58339774..58339779, - |
| 3.44e-153 | FFCP PHASE1:Hg19::chr2:58339774..58339779,-#_44826a13236192cb3f9b0189f536e638 | p@chr2:58339774..58339779, - |
| 4.04e-153 | FFCP PHASE1:Hg19::chr11:61737685..61737701,-#_e7896173d41d915780508f0396fa9627 | p@chr11:61737685..61737701, - |
| 4.04e-153 | FFCP PHASE2:Hg19::chr11:61737685..61737701,-#_e7896173d41d915780508f0396fa9627 | p@chr11:61737685..61737701, - |
| 5.57e-153 | FFCP PHASE1:Hg19::chr11:10921401..10921434,-#_7b58501ac869955f606505a72e90b50c | p@chr11:10921401..10921434, - |
| 5.57e-153 | FFCP PHASE2:Hg19::chr11:10921401..10921434,-#_7b58501ac869955f606505a72e90b50c | p@chr11:10921401..10921434, - |
| 2.07e-152 | FFCP PHASE1:Hg19::chr1:212659324..212659370,-#_15d17b9c25db6dea4ecce56facdd39ec | p@chr1:212659324..212659370, - |
| 2.07e-152 | FFCP PHASE2:Hg19::chr1:212659324..212659370,-#_15d17b9c25db6dea4ecce56facdd39ec | p@chr1:212659324..212659370, - |
| 2.23e-152 | FFCP PHASE1:Hg19::chr19:4812881..4812891,-#_466c6d2afffab95d23f6e2bfd49c2209 | p@chr19:4812881..4812891, - |
| 2.23e-152 | FFCP PHASE2:Hg19::chr19:4812881..4812891,-#_466c6d2afffab95d23f6e2bfd49c2209 | p@chr19:4812881..4812891, - |
| 3.99e-152 | FFCP PHASE1:Hg19::chr18:13577406..13577430,-#_f7f2ecd8177a2bb84c788a93c5817bda | p@chr18:13577406..13577430, - |
| 3.99e-152 | FFCP PHASE2:Hg19::chr18:13577406..13577430,-#_f7f2ecd8177a2bb84c788a93c5817bda | p@chr18:13577406..13577430, - |
| 4.17e-152 | FFCP PHASE1:Hg19::chr9:137264021..137264038,+#_215f5ed98df0395c0e14b084bc702180 | p@chr9:137264021..137264038, + |
| 4.17e-152 | FFCP PHASE2:Hg19::chr9:137264021..137264038,+#_215f5ed98df0395c0e14b084bc702180 | p@chr9:137264021..137264038, + |
| 4.44e-152 | FFCP PHASE2:Hg19::chr8:48173159..48173173,+#_0e63b3ff4e33b1710368c075ac67dbe1 | p6@KIAA0146 |
| 4.44e-152 | FFCP PHASE1:Hg19::chr8:48173159..48173173,+#_0e63b3ff4e33b1710368c075ac67dbe1 | p6@KIAA0146 |
| 6.49e-152 | FFCP PHASE2:Hg19::chr8:71452856..71452863,+#_eb9e14c2f38bd40e94e5f0614b19ae09 | p@chr8:71452856..71452863, + |
| 6.49e-152 | FFCP PHASE1:Hg19::chr8:71452856..71452863,+#_eb9e14c2f38bd40e94e5f0614b19ae09 | p@chr8:71452856..71452863, + |
| 6.68e-152 | FFCP PHASE1:Hg19::chr22:28065655..28065677,+#_f99d5a03c36c2e21a354128ad1efb046 | p@chr22:28065655..28065677, + |
| 6.68e-152 | FFCP PHASE2:Hg19::chr22:28065655..28065677,+#_f99d5a03c36c2e21a354128ad1efb046 | p@chr22:28065655..28065677, + |
| 1.17e-151 | FFCP PHASE1:Hg19::chr20:5626328..5626343,+#_15cbca1b83b320938ee67b0533410527 | p@chr20:5626328..5626343, + |
| 1.17e-151 | FFCP PHASE2:Hg19::chr20:5626328..5626343,+#_15cbca1b83b320938ee67b0533410527 | p@chr20:5626328..5626343, + |
| 2.27e-151 | FFCP PHASE1:Hg19::chr7:151622937..151622965,-#_cd29003e24afa0772ecf8a931ef1bf6c | p@chr7:151622937..151622965, - |
| 2.27e-151 | FFCP PHASE2:Hg19::chr7:151622937..151622965,-#_cd29003e24afa0772ecf8a931ef1bf6c | p@chr7:151622937..151622965, - |
| 6.5e-151 | FFCP PHASE1:Hg19::chr17:72635873..72635891,-#_58b89f66282a13ab3a4f86c342f343f8 | p@chr17:72635873..72635891, - |
| 6.5e-151 | FFCP PHASE2:Hg19::chr17:72635873..72635891,-#_58b89f66282a13ab3a4f86c342f343f8 | p@chr17:72635873..72635891, - |
| 1.04e-150 | FFCP PHASE1:Hg19::chr17:72636264..72636304,+#_7d7a2b0a1acd4361d4b06e92ae685383 | p@chr17:72636264..72636304, + |
| 1.04e-150 | FFCP PHASE2:Hg19::chr17:72636264..72636304,+#_7d7a2b0a1acd4361d4b06e92ae685383 | p@chr17:72636264..72636304, + |
| 1.28e-150 | FFCP PHASE1:Hg19::chr7:2814742..2814772,+#_cab6ca5bba5a24bf7ca4b7660deb8d23 | p@chr7:2814742..2814772, + |
| 1.28e-150 | FFCP PHASE2:Hg19::chr7:2814742..2814772,+#_cab6ca5bba5a24bf7ca4b7660deb8d23 | p@chr7:2814742..2814772, + |
