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         <!-- Cytoscape Web JS API (needed to reference org.cytoscapeweb.Visualization) -->
         <!-- Cytoscape Web JS API (needed to reference org.cytoscapeweb.Visualization) -->
         <script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script>
         <script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script>
        <!-- Load data, TODO: HTTPRequest? -->
<script type="text/javascript">
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source="SPI1" target="ZNF512">    <data key="zscore">2.775040</data>  </edge>  <edge source="SPI1" target="CEBPZ">    <data key="zscore">4.003746</data>  </edge>  <edge source="SPI1" target="FOXN2">    <data key="zscore">7.448113</data>  </edge>  <edge source="SPI1" target="PLEK">    <data key="zscore">6.849851</data>  </edge>  <edge source="SPI1" target="PLEK">    <data key="zscore">5.235075</data>  </edge>  <edge source="SPI1" target="ZBTB11">    <data key="zscore">8.057485</data>  </edge>  <edge source="SPI1" target="IRF2">    <data key="zscore">7.405905</data>  </edge>  <edge source="SPI1" target="IRF2">    <data key="zscore">6.779052</data>  </edge>  <edge source="SPI1" target="LYAR">    <data key="zscore">3.239708</data>  </edge>  <edge source="SPI1" target="MEF2C">    <data key="zscore">3.896757</data>  </edge>  <edge source="SPI1" target="MEF2C">    <data key="zscore">4.121908</data>  </edge>  <edge source="SPI1" target="TBPL1">    <data key="zscore">2.856937</data>  </edge>  <edge source="SPI1" target="BCLAF1">    <data key="zscore">6.849183</data>  </edge>  <edge source="SPI1" target="TBP">    <data key="zscore">3.081999</data>  </edge>  <edge source="SPI1" target="CDC5L">    <data key="zscore">4.420902</data>  </edge>  <edge source="SPI1" target="ZNF292">    <data key="zscore">6.159938</data>  </edge>  <edge source="SPI1" target="TSC22D4">    <data key="zscore">6.838603</data>  </edge>  <edge source="SPI1" target="TAX1BP1">    <data key="zscore">5.961759</data>  </edge>  <edge source="SPI1" target="DMTF1">    <data key="zscore">7.087101</data>  </edge>  <edge source="SPI1" target="HNRNPK">    <data key="zscore">5.866928</data>  </edge>  <edge source="SPI1" target="TSC22D3">    <data key="zscore">4.557773</data>  </edge>  <edge source="SPI1" target="TFE3">    <data key="zscore">1.841669</data>  </edge>  <edge source="SPI1" target="TAF1">    <data key="zscore">5.163948</data>  </edge>  <edge source="USF1" target="ATF1">    <data key="zscore">3.891317</data>  </edge>  <edge source="USF1" target="GTF3A">    <data key="zscore">3.600732</data>  </edge>  <edge source="USF1" target="ZFYVE26">    <data key="zscore">2.082955</data>  </edge>  <edge source="USF1" target="MLX">    <data key="zscore">5.401957</data>  </edge>  <edge source="USF1" target="MAFG">    <data key="zscore">3.373353</data>  </edge>  <edge source="USF1" target="ATF4">    <data key="zscore">3.170045</data>  </edge>  <edge source="USF1" target="LYAR">    <data key="zscore">3.955851</data>  </edge>  <edge source="USF1" target="KIAA0415">    <data key="zscore">3.332401</data>  </edge>  <edge source="USF1" target="ZNF706">    <data key="zscore">4.274078</data>  </edge>  <edge source="YY1" target="DPF2">    <data key="zscore">5.747228</data>  </edge>  <edge source="YY1" target="ATF1">    <data key="zscore">3.230010</data>  </edge>  <edge source="YY1" target="SMARCC2">    <data key="zscore">3.839941</data>  </edge>  <edge source="YY1" target="E2F4">    <data key="zscore">2.961380</data>  </edge>  <edge source="YY1" target="UBTF">    <data key="zscore">5.209460</data>  </edge>  <edge source="YY1" target="MYST2">    <data key="zscore">2.371746</data>  </edge>  <edge source="YY1" target="ZBTB40">    <data key="zscore">2.227703</data>  </edge>  <edge source="YY1" target="ZZZ3">    <data key="zscore">4.277962</data>  </edge>  <edge source="YY1" target="ADNP">    <data key="zscore">3.359522</data>  </edge>  <edge source="YY1" target="HMGXB4">    <data key="zscore">3.811354</data>  </edge>  <edge source="YY1" target="PHF5A">    <data key="zscore">4.458718</data>  </edge>  <edge source="YY1" target="SREBF2">    <data key="zscore">3.776258</data>  </edge>  <edge source="YY1" target="SREBF2">    <data key="zscore">3.353074</data>  </edge>  <edge source="YY1" target="THAP6">    <data key="zscore">1.762828</data>  </edge>  <edge source="YY1" target="ZMAT2">    <data key="zscore">2.237969</data>  </edge>  <edge source="YY1" target="ZNF622">    <data key="zscore">4.123978</data>  </edge>  <edge source="YY1" target="RXRB">    <data key="zscore">2.513837</data>  </edge>  <edge source="YY1" target="ZNF318">    <data key="zscore">3.206873</data>  </edge>  <edge source="YY1" target="HSF1">    <data key="zscore">2.812701</data>  </edge>  <edge source="YY1" target="THAP1">    <data key="zscore">5.166689</data>  </edge>  <edge source="YY1" target="MLLT3">    <data key="zscore">2.877153</data>  </edge>  <edge source="YY1" target="NFX1">    <data key="zscore">2.254033</data>  </edge>  <edge source="ZEB1" target="ZNF664">    <data key="zscore">6.777389</data>  </edge>  <edge source="ZEB1" target="ZNF770">    <data key="zscore">7.720167</data>  </edge>  <edge source="ZEB1" target="ZNF646">    <data key="zscore">2.984062</data>  </edge>  <edge source="ZEB1" target="MEF2B">    <data key="zscore">4.517203</data>  </edge>  <edge source="ZEB1" target="ZNF589">    <data key="zscore">5.272572</data>  </edge>  <node id="MLX">    <data key="motif"></data>  </node>  <node id="ARNT">    <data key="motif">ARNT_ARNT2_BHLHB2_MAX_MYC_USF1</data>  </node>  <node id="ZFP64">    <data key="motif"></data>  </node>  <node id="ARID4B">    <data key="motif"></data>  </node>  <node id="DDIT3">    <data key="motif"></data>  </node>  <node id="YBX1">    <data key="motif"></data>  </node>  <node id="YY1">    <data key="motif">YY1</data>  </node>  <node id="NFKBIA">    <data key="motif"></data>  </node>  <node id="IFI16">    <data key="motif"></data>  </node>  <node id="ZNF326">    <data key="motif"></data>  </node>  <node id="CARHSP1">    <data key="motif"></data>  </node>  <node id="ENO1">    <data key="motif"></data>  </node>  <node id="ZNF207">    <data key="motif"></data>  </node>  <node id="FLI1">    <data key="motif"></data>  </node>  <node id="ATF6B">    <data key="motif"></data>  </node>  <node id="PHF5A">    <data key="motif"></data>  </node>  <node id="ZNF770">    <data key="motif"></data>  </node>  <node id="ZNF263">    <data key="motif"></data>  </node>  <node id="SP3">    <data key="motif"></data>  </node>  <node id="CEBPZ">    <data key="motif"></data>  </node>  <node id="NFYC">    <data key="motif">NFY{A,B,C}</data>  </node>  <node id="ATRX">    <data key="motif"></data>  </node>  <node id="ZNF134">    <data key="motif"></data>  </node>  <node id="JUNB">    <data key="motif"></data>  </node>  <node id="TERF1">    <data key="motif"></data>  </node>  <node id="ZC3H13">    <data key="motif"></data>  </node>  <node id="SSRP1">    <data key="motif"></data>  </node>  <node id="RFX3">    <data key="motif"></data>  </node>  <node id="PBX4">    <data key="motif"></data>  </node>  <node id="TAX1BP1">    <data key="motif"></data>  </node>  <node id="DMTF1">    <data key="motif"></data>  </node>  <node id="ZZZ3">    <data key="motif"></data>  </node>  <node id="ZNF646">    <data key="motif"></data>  </node>  <node id="NFKB2">    <data key="motif"></data>  </node>  <node id="ZNF75A">    <data key="motif"></data>  </node>  <node id="UBTF">    <data key="motif"></data>  </node>  <node id="CDC5L">    <data key="motif"></data>  </node>  <node id="CAMTA1">    <data key="motif"></data>  </node>  <node id="ZKSCAN1">    <data key="motif"></data>  </node>  <node id="ZNF664">    <data key="motif"></data>  </node>  <node id="SOX9">    <data key="motif"></data>  </node>  <node id="VEZF1">    <data key="motif"></data>  </node>  <node id="MYST2">    <data key="motif"></data>  </node>  <node id="HOMEZ">    <data key="motif"></data>  </node>  <node id="ZNFX1">    <data key="motif"></data>  </node>  <node id="REL">    <data key="motif">NFKB1_REL_RELA</data>  </node>  <node id="MTA2">    <data key="motif"></data>  </node>  <node id="ZNF107">    <data key="motif"></data>  </node>  <node id="ZCCHC6">    <data key="motif"></data>  </node>  <node id="MAFG">    <data key="motif"></data>  </node>  <node id="MEF2B">    <data key="motif"></data>  </node>  <node id="ZNF394">    <data key="motif"></data>  </node>  <node id="ZNF12">    <data key="motif"></data>  </node>  <node id="JUND">    <data key="motif"></data>  </node>  <node id="POU2F1">    <data key="motif">POU2F1..3</data>  </node>  <node id="GABPB1">    <data key="motif">ELK1,4_GABP{A,B1}</data>  </node>  <node id="PRR13">    <data key="motif"></data>  </node>  <node id="PHB2">    <data key="motif"></data>  </node>  <node id="HMGXB3">    <data key="motif"></data>  </node>  <node id="ZC3H15">    <data key="motif"></data>  </node>  <node id="ZNF35">    <data key="motif"></data>  </node>  <node id="ZC3H12A">    <data key="motif"></data>  </node>  <node id="TBP">    <data key="motif"></data>  </node>  <node id="LRRFIP2">    <data key="motif"></data>  </node>  <node id="SREBF2">    <data key="motif"></data>  </node>  <node id="STAT6">    <data key="motif"></data>  </node>  <node id="ZNF195">    <data key="motif"></data>  </node>  <node id="ZEB1">    <data key="motif">ZEB1</data>  </node>  <node id="RFX5">    <data key="motif"></data>  </node>  <node id="CREBZF">    <data key="motif"></data>  </node>  <node id="SP140L">    <data key="motif"></data>  </node>  <node id="SMARCC2">    <data key="motif">DMAP1_NCOR{1,2}_SMARC</data>  </node>  <node id="HLTF">    <data key="motif"></data>  </node>  <node id="RELB">    <data key="motif"></data>  </node>  <node id="ETV6">    <data key="motif"></data>  </node>  <node id="ZNF700">    <data key="motif"></data>  </node>  <node id="IKZF2">    <data key="motif"></data>  </node>  <node id="DNAJC2">    <data key="motif"></data>  </node>  <node id="SMAD2">    <data key="motif"></data>  </node>  <node id="SMARCA5">    <data key="motif">DMAP1_NCOR{1,2}_SMARC</data>  </node>  <node id="HMG20B">    <data key="motif"></data>  </node>  <node id="SMARCC1">    <data key="motif"></data>  </node>  <node id="MIER1">    <data key="motif"></data>  </node>  <node id="CBFB">    <data key="motif"></data>  </node>  <node id="ZBTB11">    <data key="motif"></data>  </node>  <node id="NFX1">    <data key="motif"></data>  </node>  <node id="GATAD2B">    <data key="motif"></data>  </node>  <node id="POGZ">    <data key="motif"></data>  </node>  <node id="HMGA1">    <data key="motif"></data>  </node>  <node id="ZNF589">    <data key="motif"></data>  </node>  <node id="THAP6">    <data key="motif"></data>  </node>  <node id="IRF1">    <data key="motif">IRF1,2</data>  </node>  <node id="ZNF24">    <data key="motif"></data>  </node>  <node id="MYC">    <data key="motif">ARNT_ARNT2_BHLHB2_MAX_MYC_USF1</data>  </node>  <node id="LYAR">    <data key="motif"></data>  </node>  <node id="KIAA0415">    <data key="motif"></data>  </node>  <node id="ESRRA">    <data key="motif"></data>  </node>  <node id="IRF3">    <data key="motif"></data>  </node>  <node id="MAX">    <data key="motif">ARNT_ARNT2_BHLHB2_MAX_MYC_USF1</data>  </node>  <node id="NFKBIE">    <data key="motif"></data>  </node>  <node id="SOX4">    <data key="motif"></data>  </node>  <node id="CEBPG">    <data key="motif"></data>  </node>  <node id="MLLT3">    <data key="motif"></data>  </node>  <node id="IRF9">    <data key="motif"></data>  </node>  <node id="THAP1">    <data key="motif"></data>  </node>  <node id="NCOR1">    <data key="motif">DMAP1_NCOR{1,2}_SMARC</data>  </node>  <node id="TFAM">    <data key="motif"></data>  </node>  <node id="GATAD2A">    <data key="motif"></data>  </node>  <node id="TSC22D3">    <data key="motif"></data>  </node>  <node id="ZNF687">    <data key="motif"></data>  </node>  <node id="TFE3">    <data key="motif"></data>  </node>  <node id="ZNF511">    <data key="motif"></data>  </node>  <node id="PLEK">    <data key="motif"></data>  </node>  <node id="SP2">    <data key="motif"></data>  </node>  <node id="ETV5">    <data key="motif"></data>  </node>  <node id="KDM5A">    <data key="motif"></data>  </node>  <node id="ARID1B">    <data key="motif"></data>  </node>  <node id="ZNF318">    <data key="motif"></data>  </node>  <node id="ZGPAT">    <data key="motif"></data>  </node>  <node id="NONO">    <data key="motif"></data>  </node>  <node id="ZNF512">    <data key="motif"></data>  </node>  <node id="NFE2L1">    <data key="motif"></data>  </node>  <node id="IKZF3">    <data key="motif"></data>  </node>  <node id="MLLT1">    <data key="motif"></data>  </node>  <node id="IRF7">    <data key="motif">IRF7</data>  </node>  <node id="ATF1">    <data key="motif"></data>  </node>  <node id="SFPQ">    <data key="motif"></data>  </node>  <node id="E2F7">    <data key="motif"></data>  </node>  <node id="GTF3A">    <data key="motif"></data>  </node>  <node id="MYST3">    <data key="motif"></data>  </node>  <node id="ETS1">    <data key="motif"></data>  </node>  <node id="ZNF121">    <data key="motif"></data>  </node>  <node id="ELK1">    <data key="motif">ELK1,4_GABP{A,B1}</data>  </node>  <node id="ZNF33A">    <data key="motif"></data>  </node>  <node id="RUNX3">    <data key="motif">RUNX1..3</data>  </node>  <node id="LASS6">    <data key="motif"></data>  </node>  <node id="NFKBIZ">    <data key="motif"></data>  </node>  <node id="SP100">    <data key="motif"></data>  </node>  <node id="POU3F1">    <data key="motif"></data>  </node>  <node id="SP110">    <data key="motif"></data>  </node>  <node id="POU2F2">    <data key="motif">POU2F1..3</data>  </node>  <node id="MBD2">    <data key="motif"></data>  </node>  <node id="NR1H2">    <data key="motif"></data>  </node>  <node id="EGR3">    <data key="motif"></data>  </node>  <node id="ZNF292">    <data key="motif"></data>  </node>  <node id="ATF4">    <data key="motif"></data>  </node>  <node id="TERF2">    <data key="motif"></data>  </node>  <node id="CSDA">    <data key="motif"></data>  </node>  <node id="STAT3">    <data key="motif"></data>  </node>  <node id="HINFP">    <data key="motif"></data>  </node>  <node id="BPTF">    <data key="motif"></data>  </node>  <node id="ZMAT2">    <data key="motif"></data>  </node>  <node id="ZNF277">    <data key="motif"></data>  </node>  <node id="RELA">    <data key="motif">NFKB1_REL_RELA</data>  </node>  <node id="ZNF655">    <data key="motif"></data>  </node>  <node id="FOXK2">    <data key="motif"></data>  </node>  <node id="PHF20">    <data key="motif"></data>  </node>  <node id="SRF">    <data key="motif"></data>  </node>  <node id="STAT1">    <data key="motif"></data>  </node>  <node id="ZNF593">    <data key="motif"></data>  </node>  <node id="HMGXB4">    <data key="motif"></data>  </node>  <node id="ZNF585A">    <data key="motif"></data>  </node>  <node id="DPF2">    <data key="motif"></data>  </node>  <node id="HIST2H2AC">    <data key="motif"></data>  </node>  <node id="PRDM2">    <data key="motif"></data>  </node>  <node id="KDM5C">    <data key="motif"></data>  </node>  <node id="SPI1">    <data key="motif">SPI1</data>  </node>  <node id="ZFYVE26">    <data key="motif"></data>  </node>  <node id="ZNF192">    <data key="motif"></data>  </node>  <node id="ZBTB40">    <data key="motif"></data>  </node>  <node id="TP63">    <data key="motif"></data>  </node>  <node id="BATF">    <data key="motif"></data>  </node>  <node id="HSF1">    <data key="motif"></data>  </node>  <node id="NFATC2">    <data key="motif"></data>  </node>  <node id="DR1">    <data key="motif"></data>  </node>  <node id="C14ORF106">    <data key="motif"></data>  </node>  <node id="BCLAF1">    <data key="motif"></data>  </node>  <node id="THAP11">    <data key="motif"></data>  </node>  <node id="RREB1">    <data key="motif"></data>  </node>  <node id="IRF8">    <data key="motif"></data>  </node>  <node id="NFKB1">    <data key="motif">NFKB1_REL_RELA</data>  </node>  <node id="NOC3L">    <data key="motif"></data>  </node>  <node id="ELK4">    <data key="motif">ELK1,4_GABP{A,B1}</data>  </node>  <node id="NFYA">    <data key="motif">NFY{A,B,C}</data>  </node>  <node id="C14ORF43">    <data key="motif"></data>  </node>  <node id="HNRNPK">    <data key="motif"></data>  </node>  <node id="ZNF410">    <data key="motif"></data>  </node>  <node id="BCL3">    <data key="motif"></data>  </node>  <node id="ELF1">    <data key="motif">ELF1,2,4</data>  </node>  <node id="TOX4">    <data key="motif"></data>  </node>  <node id="ZNF141">    <data key="motif"></data>  </node>  <node id="ZC3H18">    <data key="motif"></data>  </node>  <node id="ZBTB33">    <data key="motif"></data>  </node>  <node id="ZNF22">    <data key="motif"></data>  </node>  <node id="FOXN2">    <data key="motif"></data>  </node>  <node id="ZBTB17">    <data key="motif"></data>  </node>  <node id="MGA">    <data key="motif"></data>  </node>  <node id="ZNF706">    <data key="motif"></data>  </node>  <node id="USF1">    <data key="motif">ARNT_ARNT2_BHLHB2_MAX_MYC_USF1</data>  </node>  <node id="NFKBIB">    <data key="motif"></data>  </node>  <node id="IRF2">    <data key="motif">IRF1,2</data>  </node>  <node id="TAF1">    <data key="motif"></data>  </node>  <node id="TSC22D4">    <data key="motif"></data>  </node>  <node id="ZNF498">    <data key="motif"></data>  </node>  <node id="UBP1">    <data key="motif"></data>  </node>  <node id="RERE">    <data key="motif"></data>  </node>  <node id="ADNP">    <data key="motif"></data>  </node>  <node id="ANKZF1">    <data key="motif"></data>  </node>  <node id="MEF2C">    <data key="motif"></data>  </node>  <node id="ZBTB43">    <data key="motif"></data>  </node>  <node id="ZNF622">    <data key="motif"></data>  </node>  <node id="ZNF672">    <data key="motif"></data>  </node>  <node id="ZNF275">    <data key="motif"></data>  </node>  <node id="E2F4">    <data key="motif"></data>  </node>  <node id="ARID3B">    <data key="motif"></data>  </node>  <node id="GON4L">    <data key="motif"></data>  </node>  <node id="TBPL1">    <data key="motif"></data>  </node>  <node id="BCL11A">    <data key="motif"></data>  </node>  <node id="DNAJC1">    <data key="motif"></data>  </node>  <node id="RXRB">    <data key="motif"></data>  </node>  </graph> </graphml>';
</script>
          
          
         <script type="text/javascript">
         <script type="text/javascript">
Line 43: Line 38:
                     // where you have the Flash installer SWF
                     // where you have the Flash installer SWF
                     flashInstallerPath: "/resource_browser/rb_js/cytoscapeweb/swf/playerProductInstall"
                     flashInstallerPath: "/resource_browser/rb_js/cytoscapeweb/swf/playerProductInstall"
                };
// visual style we will use
                var visual_style = {
                    global: {
                        backgroundColor: "#ffffff",
                        opacity: 0.1,
                        tooltipDelay: 10
                    },
                    nodes: {
                        label: { passthroughMapper: { attrName: "id" } },
                        tf: { passthroughMapper: { attrName: "id" } },
                        //tooltipText: "<b>${id}</b><br />${motif}",
                        shape: "ellipse",
                        borderWidth: 1,
                        borderColor: "#000000",
                        size: 40,
                        color: "#0099ff",
                        opacity: 0.4,
                        labelHorizontalAnchor: "center"
                    },
                    edges: {
                        //width: { passthroughMapper: { attrName: "zscore" } },
                        label: { passthroughMapper: { attrName: "id" } },
                        tooltipText: { passthroughMapper: { attrName: "id" } },
                        //tooltipText: "<b>${id}</b><br />${zscore}",
                        color: "#011e59",
                        targetArrowShape: "delta",
                        sourceArrowShape: "",
                        labelGlowOpacity: 0.8,
                        labelGlowColor: "#000000"
                    }
                };
               
                // draw options
                var draw_options = {
                    // your data goes here
                    network: sif,
    //visualStyle: visual_style,
    nodeTooltipsEnabled: true,
    edgeTooltipsEnabled: true,
                    // hide pan zoom?
                    panZoomControlVisible: true
                 };
                 };
                  
                  
                // init and draw
                var vis = new org.cytoscapeweb.Visualization(div_id, options);
                 vis.draw({ network: sif });
                 vis.draw({ network: sif });
             };
             };

Revision as of 13:04, 23 April 2012

Cytoscape Web will replace the contents of this div with your graph.

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