Cytoscape test3: Difference between revisions
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Cytoscape Web will replace the contents of this div with your graph. | Cytoscape Web will replace the contents of this div with your graph. | ||
</div> | </div> | ||
<div id="style_panel"> | |||
<h3>Style</h3> | |||
<br />Layout: <select id="cyto_layout"> | |||
<option value="ForceDirected">Force Directed</option> | |||
<option value="Circle">Circle</option> | |||
<option value="Radial">Radial</option> | |||
<option value="Tree">Tree</option> | |||
</select><a href="#" id="cyto_recalc">(recalculate)</a> | |||
</div> | |||
<div id="filter_panel"> | |||
<h3>Filter</h3> | |||
<table> | |||
<tr><th>Z-Score</th><tr> | |||
<tr><td><span id="cyto_zscore_min">0.00</span> </td><td> <div id="slider1" class="sliderbar"></div> </td><td> <span id="cyto_zscore_max">0.00</span></td></tr> | |||
<tr><td></td><td><input type="text" id="cyto_zscore_filter_min" value="0" style="float: left;"/> <input type="text" id="cyto_zscore_filter_max" value="100" style="float: right;"/></td><td></td></tr> | |||
</table> | |||
<a href="#" id="cyto_tf_motif_filter">TF->MOTIF</a> <a href="#" id="cyto_motif_tf_filter">MOTIF->TF</a> <a href="#" id="cyto_all_filter">TF->MOTIF->TF</a> | |||
</div> | |||
<div id="properties_panel"> | |||
<div style="width: 50%; height:300px; overflow-y:scroll; resize:both; float: left; font-size: x-small;"> | |||
<table id="nodes_list" border="1" width="100%" class="wikitable"> | |||
<tr><th>TF</th><th>Motif</th></tr> | |||
</table> | |||
</div> | |||
<div style="width: 50%; height:300px; overflow-y:scroll; resize:both; font-size: x-small;"> | |||
<table id="edges_list" border="1" width="100%" class="wikitable"> | |||
<tr><th>Source TF</th><th>Target TF</th><th>Promoter</th><th>Z-Score</th></tr> | |||
</table> | |||
</div> | |||
</div> | |||
<!-- JSON support for IE (needed to use JS API) --> | <!-- JSON support for IE (needed to use JS API) --> | ||
Revision as of 13:16, 8 May 2012
FF:10717-109I6, TF to Motif to TF network
Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.
Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).
Cytoscape Web will replace the contents of this div with your graph.
| TF | Motif |
|---|
| Source TF | Target TF | Promoter | Z-Score |
|---|
