Revision as of 13:20, 8 May 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

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TF	Motif

Source TF	Target TF	Promoter	Z-Score

@@ Line 70: / Line 70: @@
 		$(function(){
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key="zscore">2.786958</data> <data key="promoter">chr8:77593474..77593612,+</data> </edge> <edge id="e5" source="ARNTL2" target="NFIX"> <data key="zscore">2.512098</data> <data key="promoter">chr19:13106214..13106382,+</data> </edge> <edge id="e6" source="ARNTL2" target="ZNF507"> <data key="zscore">4.290077</data> <data key="promoter">chr19:32836499..32836551,+</data> </edge> <edge id="e7" source="ARNTL2" target="ZNF593"> <data key="zscore">6.795832</data> <data key="promoter">chr1:26496382..26496457,+</data> </edge> <edge id="e8" source="ARNTL2" target="LYAR"> <data key="zscore">3.218736</data> <data key="promoter">chr4:4291861..4291913,-</data> </edge> <edge id="e9" source="ARNTL2" target="MATR3"> <data key="zscore">5.344587</data> <data key="promoter">chr5:138609782..138609826,+</data> </edge> <edge id="e10" source="ARNTL2" target="PLAGL1"> <data key="zscore">1.795280</data> <data key="promoter">chr6:144329384..144329405,-</data> </edge> <edge id="e11" source="ARNTL2" target="FOXP4"> <data key="zscore">4.201205</data> <data key="promoter">chr6:41514078..41514158,+</data> </edge> <edge id="e12" source="CDC5L" target="SOX15"> <data key="zscore">2.026144</data> <data key="promoter">chr17:7493405..7493419,-</data> </edge> <edge id="e13" source="CDC5L" target="TFAP2C"> <data key="zscore">2.842422</data> <data key="promoter">chr20:55204351..55204377,+</data> </edge> <edge id="e14" source="CDC5L" target="PCBP1"> <data key="zscore">3.387780</data> <data key="promoter">chr2:70314579..70314590,+</data> </edge> <edge id="e15" source="E2F1" target="E2F8"> <data key="zscore">13.881050</data> <data key="promoter">chr11:19262421..19262455,-</data> </edge> <edge id="e16" source="E2F1" target="PAX6"> <data key="zscore">7.520784</data> <data key="promoter">chr11:31832610..31832639,-</data> </edge> <edge id="e17" source="E2F1" target="PAX6"> <data key="zscore">4.551613</data> <data key="promoter">chr11:31832658..31832681,-</data> </edge> <edge id="e18" source="E2F1" target="DDB2"> <data key="zscore">8.634349</data> <data key="promoter">chr11:47236584..47236679,+</data> </edge> <edge id="e19" source="E2F1" target="CREBZF"> <data key="zscore">7.967076</data> <data key="promoter">chr11:85376121..85376181,-</data> </edge> <edge id="e20" source="E2F1" target="E2F7"> <data key="zscore">8.834300</data> <data key="promoter">chr12:77459306..77459365,-</data> </edge> <edge id="e21" source="E2F1" target="TFDP1"> <data key="zscore">12.764142</data> <data key="promoter">chr13:114238997..114239077,+</data> </edge> <edge id="e22" source="E2F1" target="ZNF828"> <data key="zscore">13.732920</data> <data key="promoter">chr13:115079949..115080022,+</data> </edge> <edge id="e23" source="E2F1" target="CTCF"> <data key="zscore">10.989668</data> <data key="promoter">chr16:67596417..67596497,+</data> </edge> <edge id="e24" source="E2F1" target="HOXB7"> <data key="zscore">5.976186</data> <data key="promoter">chr17:46687959..46688007,-</data> </edge> <edge id="e25" source="E2F1" target="DNMT1"> <data key="zscore">14.442942</data> <data key="promoter">chr19:10305581..10305646,-</data> </edge> <edge id="e26" source="E2F1" target="ZNF473"> <data key="zscore">12.242552</data> <data key="promoter">chr19:50529247..50529296,+</data> </edge> <edge id="e27" source="E2F1" target="ZSCAN22"> <data key="zscore">9.279835</data> <data key="promoter">chr19:58838369..58838439,+</data> </edge> <edge id="e28" source="E2F1" target="STIL"> <data key="zscore">11.896066</data> <data key="promoter">chr1:47779762..47779827,-</data> </edge> <edge id="e29" source="E2F1" target="ZNF644"> <data key="zscore">3.675427</data> <data key="promoter">chr1:91487553..91487612,-</data> </edge> <edge id="e30" source="E2F1" target="E2F1"> <data key="zscore">11.184354</data> <data key="promoter">chr20:32274179..32274213,-</data> </edge> <edge id="e31" source="E2F1" target="GMEB2"> <data key="zscore">3.649241</data> <data key="promoter">chr20:62258402..62258464,-</data> </edge> <edge id="e32" source="E2F1" target="TFDP2"> <data key="zscore">6.243192</data> <data key="promoter">chr3:141868293..141868355,-</data> </edge> <edge id="e33" source="E2F1" target="TFDP2"> <data key="zscore">6.980334</data> <data key="promoter">chr3:141868357..141868393,-</data> </edge> <edge id="e34" source="E2F1" target="MATR3"> <data key="zscore">5.335442</data> <data key="promoter">chr5:138629349..138629386,+</data> </edge> <edge id="e35" source="E2F1" target="MATR3"> <data key="zscore">9.145348</data> <data key="promoter">chr5:138629417..138629446,+</data> </edge> <edge id="e36" source="E2F1" target="E2F3"> <data key="zscore">11.747304</data> <data key="promoter">chr6:20402102..20402152,+</data> </edge> <edge id="e37" source="E2F1" target="SOX4"> <data key="zscore">5.461751</data> <data key="promoter">chr6:21593973..21593988,+</data> </edge> <edge id="e38" source="E2F1" target="TCF19"> <data key="zscore">11.251513</data> <data key="promoter">chr6:31126291..31126399,+</data> </edge> <edge id="e39" source="E2F1" target="GRHL2"> <data key="zscore">3.270715</data> <data key="promoter">chr8:102504651..102504683,+</data> </edge> <edge id="e40" source="E2F1" target="GRHL2"> <data key="zscore">4.898434</data> <data key="promoter">chr8:102504690..102504704,+</data> </edge> <edge id="e41" source="E2F1" target="MYC"> <data key="zscore">7.263588</data> <data key="promoter">chr8:128748470..128748487,+</data> </edge> <edge id="e42" source="E2F3" target="E2F8"> <data key="zscore">13.881050</data> <data key="promoter">chr11:19262421..19262455,-</data> </edge> <edge id="e43" source="E2F3" target="PAX6"> <data key="zscore">7.520784</data> <data key="promoter">chr11:31832610..31832639,-</data> </edge> <edge id="e44" source="E2F3" target="PAX6"> <data key="zscore">4.551613</data> <data key="promoter">chr11:31832658..31832681,-</data> </edge> <edge id="e45" source="E2F3" target="DDB2"> <data key="zscore">8.634349</data> <data key="promoter">chr11:47236584..47236679,+</data> </edge> <edge id="e46" source="E2F3" target="CREBZF"> <data key="zscore">7.967076</data> <data key="promoter">chr11:85376121..85376181,-</data> </edge> <edge id="e47" source="E2F3" target="E2F7"> <data key="zscore">8.834300</data> <data key="promoter">chr12:77459306..77459365,-</data> </edge> <edge id="e48" source="E2F3" target="TFDP1"> <data key="zscore">12.764142</data> <data key="promoter">chr13:114238997..114239077,+</data> </edge> <edge id="e49" source="E2F3" target="ZNF828"> <data key="zscore">13.732920</data> <data key="promoter">chr13:115079949..115080022,+</data> </edge> <edge id="e50" source="E2F3" target="CTCF"> <data key="zscore">10.989668</data> <data key="promoter">chr16:67596417..67596497,+</data> </edge> <edge id="e51" source="E2F3" target="HOXB7"> <data key="zscore">5.976186</data> <data key="promoter">chr17:46687959..46688007,-</data> </edge> <edge id="e52" source="E2F3" target="DNMT1"> <data key="zscore">14.442942</data> <data key="promoter">chr19:10305581..10305646,-</data> </edge> <edge id="e53" source="E2F3" target="ZNF473"> <data key="zscore">12.242552</data> <data key="promoter">chr19:50529247..50529296,+</data> </edge> <edge id="e54" source="E2F3" target="ZSCAN22"> <data key="zscore">9.279835</data> <data key="promoter">chr19:58838369..58838439,+</data> </edge> <edge id="e55" source="E2F3" target="STIL"> <data key="zscore">11.896066</data> <data key="promoter">chr1:47779762..47779827,-</data> </edge> <edge id="e56" source="E2F3" target="ZNF644"> <data key="zscore">3.675427</data> <data key="promoter">chr1:91487553..91487612,-</data> </edge> <edge id="e57" source="E2F3" target="E2F1"> <data key="zscore">11.184354</data> <data key="promoter">chr20:32274179..32274213,-</data> </edge> <edge id="e58" source="E2F3" target="GMEB2"> <data key="zscore">3.649241</data> <data key="promoter">chr20:62258402..62258464,-</data> </edge> <edge id="e59" source="E2F3" target="TFDP2"> <data key="zscore">6.243192</data> <data key="promoter">chr3:141868293..141868355,-</data> </edge> <edge id="e60" source="E2F3" target="TFDP2"> <data key="zscore">6.980334</data> <data key="promoter">chr3:141868357..141868393,-</data> </edge> <edge id="e61" source="E2F3" target="MATR3"> <data key="zscore">5.335442</data> <data key="promoter">chr5:138629349..138629386,+</data> </edge> <edge id="e62" source="E2F3" target="MATR3"> <data key="zscore">9.145348</data> <data key="promoter">chr5:138629417..138629446,+</data> </edge> <edge id="e63" source="E2F3" target="E2F3"> <data key="zscore">11.747304</data> <data key="promoter">chr6:20402102..20402152,+</data> </edge> <edge id="e64" source="E2F3" target="SOX4"> <data key="zscore">5.461751</data> <data key="promoter">chr6:21593973..21593988,+</data> </edge> <edge id="e65" source="E2F3" target="TCF19"> <data key="zscore">11.251513</data> <data key="promoter">chr6:31126291..31126399,+</data> </edge> <edge id="e66" source="E2F3" target="GRHL2"> <data key="zscore">3.270715</data> <data key="promoter">chr8:102504651..102504683,+</data> </edge> <edge id="e67" source="E2F3" target="GRHL2"> <data key="zscore">4.898434</data> <data key="promoter">chr8:102504690..102504704,+</data> </edge> <edge id="e68" source="E2F3" target="MYC"> <data key="zscore">7.263588</data> <data key="promoter">chr8:128748470..128748487,+</data> </edge> <edge id="e69" source="E2F4" target="E2F8"> <data key="zscore">13.881050</data> <data key="promoter">chr11:19262421..19262455,-</data> </edge> <edge id="e70" source="E2F4" target="PAX6"> <data key="zscore">7.520784</data> <data key="promoter">chr11:31832610..31832639,-</data> </edge> <edge id="e71" source="E2F4" target="PAX6"> <data key="zscore">4.551613</data> <data key="promoter">chr11:31832658..31832681,-</data> </edge> <edge id="e72" source="E2F4" target="DDB2"> <data key="zscore">8.634349</data> <data key="promoter">chr11:47236584..47236679,+</data> </edge> <edge id="e73" source="E2F4" target="CREBZF"> <data key="zscore">7.967076</data> <data key="promoter">chr11:85376121..85376181,-</data> </edge> <edge id="e74" source="E2F4" target="E2F7"> <data key="zscore">8.834300</data> <data key="promoter">chr12:77459306..77459365,-</data> </edge> <edge id="e75" source="E2F4" target="TFDP1"> <data key="zscore">12.764142</data> <data key="promoter">chr13:114238997..114239077,+</data> </edge> <edge id="e76" source="E2F4" target="ZNF828"> <data key="zscore">13.732920</data> <data key="promoter">chr13:115079949..115080022,+</data> </edge> <edge id="e77" source="E2F4" target="CTCF"> <data key="zscore">10.989668</data> <data key="promoter">chr16:67596417..67596497,+</data> </edge> <edge id="e78" source="E2F4" target="HOXB7"> <data key="zscore">5.976186</data> <data key="promoter">chr17:46687959..46688007,-</data> </edge> <edge id="e79" source="E2F4" target="DNMT1"> <data key="zscore">14.442942</data> <data key="promoter">chr19:10305581..10305646,-</data> </edge> <edge id="e80" source="E2F4" target="ZNF473"> <data key="zscore">12.242552</data> <data key="promoter">chr19:50529247..50529296,+</data> </edge> <edge id="e81" source="E2F4" target="ZSCAN22"> <data key="zscore">9.279835</data> <data key="promoter">chr19:58838369..58838439,+</data> </edge> <edge id="e82" source="E2F4" target="STIL"> <data key="zscore">11.896066</data> <data key="promoter">chr1:47779762..47779827,-</data> </edge> <edge id="e83" source="E2F4" target="ZNF644"> <data key="zscore">3.675427</data> <data key="promoter">chr1:91487553..91487612,-</data> </edge> <edge id="e84" source="E2F4" target="E2F1"> <data key="zscore">11.184354</data> <data key="promoter">chr20:32274179..32274213,-</data> </edge> <edge id="e85" source="E2F4" target="GMEB2"> <data key="zscore">3.649241</data> <data key="promoter">chr20:62258402..62258464,-</data> </edge> <edge id="e86" source="E2F4" target="TFDP2"> <data key="zscore">6.243192</data> <data key="promoter">chr3:141868293..141868355,-</data> </edge> <edge id="e87" source="E2F4" target="TFDP2"> <data key="zscore">6.980334</data> <data key="promoter">chr3:141868357..141868393,-</data> </edge> <edge id="e88" source="E2F4" target="MATR3"> <data key="zscore">5.335442</data> <data key="promoter">chr5:138629349..138629386,+</data> </edge> <edge id="e89" source="E2F4" target="MATR3"> <data key="zscore">9.145348</data> <data key="promoter">chr5:138629417..138629446,+</data> </edge> <edge id="e90" source="E2F4" target="E2F3"> <data key="zscore">11.747304</data> <data key="promoter">chr6:20402102..20402152,+</data> </edge> <edge id="e91" source="E2F4" target="SOX4"> <data key="zscore">5.461751</data> <data key="promoter">chr6:21593973..21593988,+</data> </edge> <edge id="e92" source="E2F4" target="TCF19"> <data key="zscore">11.251513</data> <data key="promoter">chr6:31126291..31126399,+</data> </edge> <edge id="e93" source="E2F4" target="GRHL2"> <data key="zscore">3.270715</data> <data key="promoter">chr8:102504651..102504683,+</data> </edge> <edge id="e94" source="E2F4" target="GRHL2"> <data key="zscore">4.898434</data> <data key="promoter">chr8:102504690..102504704,+</data> </edge> <edge id="e95" source="E2F4" target="MYC"> <data key="zscore">7.263588</data> <data key="promoter">chr8:128748470..128748487,+</data> </edge> <edge id="e96" source="FOXQ1" target="IRF3"> <data key="zscore">2.316201</data> <data key="promoter">chr19:50169013..50169062,-</data> </edge> <edge id="e97" source="FOXQ1" target="IRF3"> <data key="zscore">3.804406</data> <data key="promoter">chr19:50169064..50169121,-</data> </edge> <edge id="e98" source="ID1" target="NFIX"> <data key="zscore">2.512098</data> <data key="promoter">chr19:13106214..13106382,+</data> </edge> <edge id="e99" source="ID1" target="ZNF507"> <data key="zscore">4.290077</data> <data key="promoter">chr19:32836499..32836551,+</data> </edge> <edge id="e100" source="ID1" target="ZNF593"> <data key="zscore">6.795832</data> <data key="promoter">chr1:26496382..26496457,+</data> </edge> <edge id="e101" source="ID1" target="LYAR"> <data key="zscore">3.218736</data> <data key="promoter">chr4:4291861..4291913,-</data> </edge> <edge id="e102" source="ID1" target="MATR3"> <data key="zscore">5.344587</data> <data key="promoter">chr5:138609782..138609826,+</data> </edge> <edge id="e103" source="ID1" target="PLAGL1"> <data key="zscore">1.795280</data> <data key="promoter">chr6:144329384..144329405,-</data> </edge> <edge id="e104" source="ID1" target="FOXP4"> <data key="zscore">4.201205</data> <data key="promoter">chr6:41514078..41514158,+</data> </edge> <edge id="e105" source="MNT" target="NFIX"> <data key="zscore">2.512098</data> <data key="promoter">chr19:13106214..13106382,+</data> </edge> <edge id="e106" source="MNT" target="ZNF507"> <data key="zscore">4.290077</data> <data key="promoter">chr19:32836499..32836551,+</data> </edge> <edge id="e107" source="MNT" target="ZNF593"> <data key="zscore">6.795832</data> <data key="promoter">chr1:26496382..26496457,+</data> </edge> <edge id="e108" source="MNT" target="LYAR"> <data key="zscore">3.218736</data> <data key="promoter">chr4:4291861..4291913,-</data> </edge> <edge id="e109" source="MNT" target="MATR3"> <data key="zscore">5.344587</data> <data key="promoter">chr5:138609782..138609826,+</data> </edge> <edge id="e110" source="MNT" target="PLAGL1"> <data key="zscore">1.795280</data> <data key="promoter">chr6:144329384..144329405,-</data> </edge> <edge id="e111" source="MNT" target="FOXP4"> <data key="zscore">4.201205</data> <data key="promoter">chr6:41514078..41514158,+</data> </edge> <edge id="e112" source="MXD3" target="NFIX"> <data key="zscore">2.512098</data> <data key="promoter">chr19:13106214..13106382,+</data> </edge> <edge id="e113" source="MXD3" target="ZNF507"> <data key="zscore">4.290077</data> <data key="promoter">chr19:32836499..32836551,+</data> </edge> <edge id="e114" source="MXD3" target="ZNF593"> <data key="zscore">6.795832</data> <data key="promoter">chr1:26496382..26496457,+</data> </edge> <edge id="e115" 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key="promoter">chr6:170863423..170863484,+</data> </edge> <edge id="e500" source="TFDP1" target="E2F3"> <data key="zscore">4.181640</data> <data key="promoter">chr6:20402102..20402152,+</data> </edge> <edge id="e501" source="TFDP1" target="TCF19"> <data key="zscore">3.912595</data> <data key="promoter">chr6:31126291..31126399,+</data> </edge> <edge id="e502" source="TFDP1" target="DNAJC2"> <data key="zscore">2.885620</data> <data key="promoter">chr7:102985160..102985273,-</data> </edge> <edge id="e503" source="TFDP1" target="GTF2I"> <data key="zscore">5.249992</data> <data key="promoter">chr7:74072021..74072119,+</data> </edge> <edge id="e504" source="TFDP1" target="PHTF2"> <data key="zscore">4.217160</data> <data key="promoter">chr7:77428149..77428220,+</data> </edge> <edge id="e505" source="TFDP1" target="ZFPM2"> <data key="zscore">2.314781</data> <data key="promoter">chr8:106330656..106330684,+</data> </edge> <edge id="e506" source="TFDP1" target="ZNF623"> <data key="zscore">5.252320</data> <data key="promoter">chr8:144718171..144718244,+</data> </edge> <edge id="e507" source="TFDP1" target="SMARCA1"> <data key="zscore">2.836590</data> <data key="promoter">chrX:128657457..128657475,-</data> </edge> <edge id="e508" source="TFDP1" target="ATRX"> <data key="zscore">2.769957</data> <data key="promoter">chrX:77041685..77041716,-</data> </edge> <edge id="e509" source="TFE3" target="NFIX"> <data key="zscore">2.512098</data> <data key="promoter">chr19:13106214..13106382,+</data> </edge> <edge id="e510" source="TFE3" target="ZNF507"> <data key="zscore">4.290077</data> <data key="promoter">chr19:32836499..32836551,+</data> </edge> <edge id="e511" source="TFE3" target="ZNF593"> <data key="zscore">6.795832</data> <data key="promoter">chr1:26496382..26496457,+</data> </edge> <edge id="e512" source="TFE3" target="LYAR"> <data key="zscore">3.218736</data> <data key="promoter">chr4:4291861..4291913,-</data> </edge> <edge id="e513" source="TFE3" target="MATR3"> <data key="zscore">5.344587</data> <data key="promoter">chr5:138609782..138609826,+</data> </edge> <edge id="e514" source="TFE3" target="PLAGL1"> <data key="zscore">1.795280</data> <data key="promoter">chr6:144329384..144329405,-</data> </edge> <edge id="e515" source="TFE3" target="FOXP4"> <data key="zscore">4.201205</data> <data key="promoter">chr6:41514078..41514158,+</data> </edge> <edge id="e516" source="TP53" target="NFKB2"> <data key="zscore">2.111995</data> <data key="promoter">chr10:104155455..104155479,+</data> </edge> <edge id="e517" source="TP53" target="FOSL1"> <data key="zscore">4.122302</data> <data key="promoter">chr11:65667846..65667868,-</data> </edge> <edge id="e518" source="TP53" target="FOSL1"> <data key="zscore">4.682434</data> <data key="promoter">chr11:65667884..65667895,-</data> </edge> <edge id="e519" source="TP53" target="ZNF219"> <data key="zscore">5.836272</data> <data key="promoter">chr14:21566731..21566836,-</data> </edge> <edge id="e520" source="TP53" target="ZNF580"> <data key="zscore">6.446524</data> <data key="promoter">chr19:56152361..56152434,+</data> </edge> <edge id="e521" source="TP53" target="MTA3"> <data key="zscore">5.386089</data> <data key="promoter">chr2:42795745..42795824,+</data> </edge> <edge id="e522" source="TP53" target="KCMF1"> <data key="zscore">5.878198</data> <data key="promoter">chr2:85198369..85198483,+</data> </edge> <edge id="e523" source="TP53" target="HMGXB3"> <data key="zscore">5.859824</data> <data key="promoter">chr5:149380256..149380343,+</data> </edge> <edge id="e524" source="TP53" target="SOX7"> <data key="zscore">3.651812</data> <data key="promoter">chr8:10588010..10588030,-</data> </edge> <edge id="e525" source="TP53" target="ZFHX4"> <data key="zscore">3.295039</data> <data key="promoter">chr8:77593474..77593612,+</data> </edge> <edge id="e526" source="ZHX3" target="EHF"> <data key="zscore">1.855803</data> <data key="promoter">chr11:34642612..34642646,+</data> </edge> <edge id="e527" source="ZHX3" target="EHF"> <data key="zscore">2.728882</data> <data key="promoter">chr11:34642656..34642667,+</data> </edge> <edge id="e528" source="ZHX3" target="SIX2"> <data key="zscore">1.689851</data> <data key="promoter">chr2:45236540..45236577,-</data> </edge> <edge id="e529" source="ZHX3" target="ZFHX4"> <data key="zscore">2.786958</data> <data key="promoter">chr8:77593474..77593612,+</data> </edge> <edge id="e530" source="ZNF143" target="ZNF37A"> <data key="zscore">5.641238</data> <data key="promoter">chr10:38383255..38383324,+</data> </edge> <edge id="e531" source="ZNF143" target="TFAM"> <data key="zscore">5.990048</data> <data key="promoter">chr10:60145155..60145206,+</data> </edge> <edge id="e532" source="ZNF143" target="ZBTB44"> <data key="zscore">1.993314</data> <data key="promoter">chr11:130184753..130184824,-</data> </edge> <edge id="e533" source="ZNF143" target="E2F8"> <data key="zscore">5.692288</data> <data key="promoter">chr11:19262421..19262455,-</data> </edge> <edge id="e534" source="ZNF143" target="ZNF605"> <data key="zscore">6.351872</data> <data key="promoter">chr12:133532864..133532899,-</data> </edge> <edge id="e535" source="ZNF143" target="ZNF268"> <data key="zscore">5.534235</data> <data key="promoter">chr12:133758072..133758114,+</data> </edge> <edge id="e536" source="ZNF143" target="FOXM1"> <data key="zscore">4.500617</data> <data key="promoter">chr12:2986206..2986258,-</data> </edge> <edge id="e537" source="ZNF143" target="FOXM1"> <data key="zscore">4.286797</data> <data key="promoter">chr12:2986275..2986363,-</data> </edge> <edge id="e538" source="ZNF143" target="ZNF828"> <data key="zscore">8.320008</data> <data key="promoter">chr13:115079949..115080022,+</data> </edge> <edge id="e539" source="ZNF143" target="ZNF280D"> <data key="zscore">4.043317</data> <data key="promoter">chr15:57025675..57025718,-</data> </edge> <edge id="e540" source="ZNF143" target="CTCF"> <data key="zscore">5.557490</data> <data key="promoter">chr16:67596417..67596497,+</data> </edge> <edge id="e541" source="ZNF143" target="MYST2"> <data key="zscore">3.204059</data> <data key="promoter">chr17:47866034..47866060,+</data> </edge> <edge id="e542" source="ZNF143" target="UNK"> <data key="zscore">6.414470</data> <data key="promoter">chr17:73780879..73780963,+</data> </edge> <edge id="e543" source="ZNF143" target="SOX15"> <data key="zscore">1.657774</data> <data key="promoter">chr17:7493405..7493419,-</data> </edge> <edge id="e544" source="ZNF143" target="TP53"> <data key="zscore">3.153098</data> <data key="promoter">chr17:7590797..7590815,-</data> </edge> <edge id="e545" source="ZNF143" target="DNMT1"> <data key="zscore">6.589135</data> <data key="promoter">chr19:10305581..10305646,-</data> </edge> <edge id="e546" source="ZNF143" target="MLL4"> <data key="zscore">2.478568</data> <data key="promoter">chr19:36208877..36208919,+</data> </edge> <edge id="e547" source="ZNF143" target="PPP1R13L"> <data key="zscore">2.716506</data> <data key="promoter">chr19:45908292..45908374,-</data> </edge> <edge id="e548" source="ZNF143" target="ZNF473"> <data key="zscore">7.899083</data> <data key="promoter">chr19:50529247..50529296,+</data> </edge> <edge id="e549" source="ZNF143" target="ZNF460"> <data key="zscore">1.605576</data> <data key="promoter">chr19:57791806..57791875,+</data> </edge> <edge id="e550" source="ZNF143" target="ZNF544"> <data key="zscore">6.713557</data> <data key="promoter">chr19:58740266..58740297,+</data> </edge> <edge id="e551" source="ZNF143" target="ZNF8"> <data key="zscore">7.286126</data> <data key="promoter">chr19:58790314..58790358,+</data> </edge> <edge id="e552" source="ZNF143" target="ZSCAN22"> <data key="zscore">6.041168</data> <data key="promoter">chr19:58838369..58838439,+</data> </edge> <edge id="e553" source="ZNF143" target="ZNF584"> <data key="zscore">6.831995</data> <data key="promoter">chr19:58920000..58920057,+</data> </edge> <edge id="e554" source="ZNF143" target="ZNF324"> <data key="zscore">3.288172</data> <data key="promoter">chr19:58978418..58978456,+</data> </edge> <edge id="e555" source="ZNF143" target="ZNF358"> <data key="zscore">2.891525</data> <data key="promoter">chr19:7580944..7581031,+</data> </edge> <edge id="e556" source="ZNF143" target="ZC3H15"> <data key="zscore">3.959290</data> <data key="promoter">chr2:187350973..187351072,+</data> </edge> <edge id="e557" source="ZNF143" target="CREB1"> <data key="zscore">3.650453</data> <data key="promoter">chr2:208394658..208394692,+</data> </edge> <edge id="e558" source="ZNF143" target="MYNN"> <data key="zscore">2.470315</data> <data key="promoter">chr3:169491171..169491205,+</data> </edge> <edge id="e559" source="ZNF143" target="NFXL1"> <data key="zscore">6.010468</data> <data key="promoter">chr4:47916588..47916607,-</data> </edge> <edge id="e560" source="ZNF143" target="PITX1"> <data key="zscore">3.023254</data> <data key="promoter">chr5:134369905..134369972,-</data> </edge> <edge id="e561" source="ZNF143" target="MATR3"> <data key="zscore">3.436943</data> <data key="promoter">chr5:138629349..138629386,+</data> </edge> <edge id="e562" source="ZNF143" target="MATR3"> <data key="zscore">4.788216</data> <data key="promoter">chr5:138629417..138629446,+</data> </edge> <edge id="e563" source="ZNF143" target="HMGXB3"> <data key="zscore">4.129164</data> <data key="promoter">chr5:149380256..149380343,+</data> </edge> <edge id="e564" source="ZNF143" target="TFAP2A"> <data key="zscore">2.476260</data> <data key="promoter">chr6:10419768..10419819,-</data> </edge> <edge id="e565" source="ZNF143" target="RXRB"> <data key="zscore">6.106647</data> <data key="promoter">chr6:33168126..33168180,-</data> </edge> <edge id="e566" source="ZNF143" target="ZNF451"> <data key="zscore">3.848880</data> <data key="promoter">chr6:56954919..56955000,+</data> </edge> <edge id="e567" source="ZNF143" target="NFE2L3"> <data key="zscore">1.954109</data> <data key="promoter">chr7:26191809..26191890,+</data> </edge> <edge id="e568" source="ZNF143" target="RBAK"> <data key="zscore">5.281784</data> <data key="promoter">chr7:5085480..5085510,+</data> </edge> <edge id="e569" source="ZNF143" target="ZNF12"> <data key="zscore">2.212581</data> <data key="promoter">chr7:6746529..6746591,-</data> </edge> <edge id="e570" source="ZNF143" target="GTF2I"> <data key="zscore">7.341711</data> <data key="promoter">chr7:74072021..74072119,+</data> </edge> <edge id="e571" source="ZNF143" target="NFKBIL2"> <data key="zscore">5.455692</data> <data key="promoter">chr8:145669791..145669834,-</data> </edge> <node id="MLX"> <data key="motif"></data> </node> <node id="ZFP64"> <data key="motif"></data> </node> <node id="YBX1"> <data key="motif"></data> </node> <node id="YY1"> <data key="motif"></data> </node> <node id="ZNF766"> <data key="motif"></data> </node> <node id="E2F8"> <data key="motif"></data> </node> <node id="ZNF326"> <data key="motif"></data> </node> <node id="CARHSP1"> <data key="motif"></data> </node> <node id="ZNF143"> <data key="motif">ZNF143</data> </node> <node id="ENO1"> <data key="motif"></data> </node> <node id="ZHX3"> <data key="motif">ADNP_IRX_SIX_ZHX</data> </node> <node id="ZNF142"> <data key="motif"></data> </node> <node id="PHF5A"> <data key="motif"></data> </node> <node id="ZNF263"> <data key="motif"></data> </node> <node id="NPAS2"> <data key="motif">bHLH_family</data> </node> <node id="NFYC"> <data key="motif">NFY{A,B,C}</data> </node> <node id="ATRX"> <data key="motif"></data> </node> <node id="ZNF823"> <data key="motif"></data> </node> <node id="TERF1"> <data key="motif"></data> </node> <node id="CREB3L2"> <data key="motif"></data> </node> <node id="FOXP4"> <data key="motif"></data> </node> <node id="ZNF37A"> <data key="motif"></data> </node> <node id="ZNF8"> <data key="motif"></data> </node> <node id="SOX7"> <data key="motif"></data> </node> <node id="ZNF385A"> <data key="motif"></data> </node> <node id="POU2F3"> <data key="motif">POU2F1..3</data> </node> <node id="FOXF2"> <data key="motif"></data> </node> <node id="NFKB2"> <data key="motif"></data> </node> <node id="NFE2L3"> <data key="motif"></data> </node> <node id="CDC5L"> <data key="motif">CDC5L</data> </node> <node id="CAMTA1"> <data key="motif"></data> </node> <node id="TEAD3"> <data key="motif"></data> </node> <node id="ZNF324"> <data key="motif"></data> </node> <node id="DBP"> <data key="motif"></data> </node> <node id="ZFPM2"> <data key="motif"></data> </node> <node id="MYST2"> <data key="motif"></data> </node> <node id="EHF"> <data key="motif"></data> </node> <node id="PPP1R13L"> <data key="motif"></data> </node> <node id="TP53"> <data key="motif">TP53</data> </node> <node id="HES4"> <data key="motif"></data> </node> <node id="ZNF605"> <data key="motif"></data> </node> <node id="PITX1"> <data key="motif"></data> </node> <node id="MTA2"> <data key="motif"></data> </node> <node id="ZFHX4"> <data key="motif"></data> </node> <node id="ID1"> <data key="motif">bHLH_family</data> </node> <node id="MNT"> <data key="motif">bHLH_family</data> </node> <node id="ZNF12"> <data key="motif"></data> </node> <node id="JDP2"> <data key="motif"></data> </node> <node id="TFAP2C"> <data key="motif"></data> </node> <node id="JUND"> <data key="motif"></data> </node> <node id="ZNF544"> <data key="motif"></data> </node> <node id="POU2F1"> <data key="motif">POU2F1..3</data> </node> <node id="HMGXB3"> <data key="motif"></data> </node> <node id="ZC3H15"> <data key="motif"></data> </node> <node id="ZNF628"> <data key="motif"></data> </node> <node id="MATR3"> <data key="motif"></data> </node> <node id="TBP"> <data key="motif"></data> </node> <node id="ELF3"> <data key="motif"></data> </node> <node id="ZNF460"> <data key="motif"></data> </node> <node id="ZNF473"> <data key="motif"></data> </node> <node id="PRKRIR"> <data key="motif"></data> </node> <node id="SREBF2"> <data key="motif"></data> </node> <node id="ZCCHC11"> <data key="motif"></data> </node> <node id="CREBZF"> <data key="motif"></data> </node> <node id="CIZ1"> <data key="motif"></data> </node> <node id="ADNP2"> <data key="motif"></data> </node> <node id="HLTF"> <data key="motif"></data> </node> <node id="PCBP1"> <data key="motif"></data> </node> <node id="TFDP2"> <data key="motif"></data> </node> <node id="DNAJC2"> <data key="motif"></data> </node> <node id="HMG20B"> <data key="motif"></data> </node> <node id="FOXQ1"> <data key="motif">FOXQ1</data> </node> <node id="ZBTB11"> <data key="motif"></data> </node> <node id="GATAD2B"> <data key="motif"></data> </node> <node id="HMGA1"> <data key="motif"></data> </node> <node id="ZNF512B"> <data key="motif"></data> </node> <node id="ZNF580"> <data key="motif"></data> </node> <node id="ZSCAN22"> <data key="motif"></data> </node> <node id="HOXB7"> <data key="motif"></data> </node> <node id="PAWR"> <data key="motif"></data> </node> <node id="LYAR"> <data key="motif"></data> </node> <node id="MYC"> <data 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			<data key="type">tf</data> 			<data key="label">CTCF</data> 		</node> 		<node id="tf_FOSL1"> 			<data key="type">tf</data> 			<data key="label">FOSL1</data> 		</node> 		<node id="tf_MTA3"> 			<data key="type">tf</data> 			<data key="label">MTA3</data> 		</node> 		<node id="tf_KCMF1"> 			<data key="type">tf</data> 			<data key="label">KCMF1</data> 		</node> 		<node id="tf_FOXK2"> 			<data key="type">tf</data> 			<data key="label">FOXK2</data> 		</node> 		<node id="tf_RBAK"> 			<data key="type">tf</data> 			<data key="label">RBAK</data> 		</node> 		<node id="tf_NFYB"> 			<data key="type">tf</data> 			<data key="label">NFYB</data> 		</node> 		<node id="tf_DNMT1"> 			<data key="type">tf</data> 			<data key="label">DNMT1</data> 		</node> 		<node id="tf_HES1"> 			<data key="type">tf</data> 			<data key="label">HES1</data> 		</node> 		<node id="tf_SRF"> 			<data key="type">tf</data> 			<data key="label">SRF</data> 		</node> 		<node id="tf_MAZ"> 			<data key="type">tf</data> 			<data key="label">MAZ</data> 		</node> 		<node id="tf_ZNF593"> 			<data key="type">tf</data> 			<data key="label">ZNF593</data> 		</node> 		<node id="tf_HMGXB4"> 			<data key="type">tf</data> 			<data key="label">HMGXB4</data> 		</node> 		<node id="tf_ZNF296"> 			<data key="type">tf</data> 			<data key="label">ZNF296</data> 		</node> 		<node id="tf_HIST2H2AC"> 			<data key="type">tf</data> 			<data key="label">HIST2H2AC</data> 		</node> 		<node id="tf_NFIX"> 			<data key="type">tf</data> 			<data key="label">NFIX</data> 		</node> 		<node id="tf_RUNX1"> 			<data key="type">tf</data> 			<data key="label">RUNX1</data> 		</node> 		<node id="tf_ZNF629"> 			<data key="type">tf</data> 			<data key="label">ZNF629</data> 		</node> 		<node id="tf_PAX6"> 			<data key="type">tf</data> 			<data key="label">PAX6</data> 		</node> 		<node id="tf_DLX2"> 			<data key="type">tf</data> 			<data key="label">DLX2</data> 		</node> 		<node id="tf_NFXL1"> 			<data key="type">tf</data> 			<data key="label">NFXL1</data> 		</node> 		<node id="tf_TP63"> 			<data key="type">tf</data> 			<data key="label">TP63</data> 		</node> 		<node id="tf_DDB2"> 			<data key="type">tf</data> 			<data key="label">DDB2</data> 		</node> 		<node id="tf_TBX20"> 			<data key="type">tf</data> 			<data key="label">TBX20</data> 		</node> 		<node id="tf_TCF19"> 			<data key="type">tf</data> 			<data key="label">TCF19</data> 		</node> 		<node id="tf_ZNF358"> 			<data key="type">tf</data> 			<data key="label">ZNF358</data> 		</node> 		<node id="tf_HSF1"> 			<data key="type">tf</data> 			<data key="label">HSF1</data> 		</node> 		<node id="tf_C14ORF106"> 			<data key="type">tf</data> 			<data key="label">C14ORF106</data> 		</node> 		<node id="tf_GMEB2"> 			<data key="type">tf</data> 			<data key="label">GMEB2</data> 		</node> 		<node id="tf_ZNF280D"> 			<data key="type">tf</data> 			<data key="label">ZNF280D</data> 		</node> 		<node id="tf_TEF"> 			<data key="type">tf</data> 			<data key="label">TEF</data> 		</node> 		<node id="tf_FUBP1"> 			<data key="type">tf</data> 			<data key="label">FUBP1</data> 		</node> 		<node id="tf_NFYA"> 			<data key="type">tf</data> 			<data key="label">NFYA</data> 		</node> 		<node id="tf_SMARCA1"> 			<data key="type">tf</data> 			<data key="label">SMARCA1</data> 		</node> 		<node id="tf_STIL"> 			<data key="type">tf</data> 			<data key="label">STIL</data> 		</node> 		<node id="tf_HNRNPK"> 			<data key="type">tf</data> 			<data key="label">HNRNPK</data> 		</node> 		<node id="tf_ELF1"> 			<data key="type">tf</data> 			<data key="label">ELF1</data> 		</node> 		<node id="tf_TOX2"> 			<data key="type">tf</data> 			<data key="label">TOX2</data> 		</node> 		<node id="tf_GRHL2"> 			<data key="type">tf</data> 			<data key="label">GRHL2</data> 		</node> 		<node id="tf_ZBTB44"> 			<data key="type">tf</data> 			<data key="label">ZBTB44</data> 		</node> 		<node id="tf_NR2F2"> 			<data key="type">tf</data> 			<data key="label">NR2F2</data> 		</node> 		<node id="tf_TFDP1"> 			<data key="type">tf</data> 			<data key="label">TFDP1</data> 		</node> 		<node id="tf_ZNF268"> 			<data key="type">tf</data> 			<data key="label">ZNF268</data> 		</node> 		<node id="tf_TFAP2A"> 			<data key="type">tf</data> 			<data key="label">TFAP2A</data> 		</node> 		<node id="tf_PBX1"> 			<data key="type">tf</data> 			<data key="label">PBX1</data> 		</node> 		<node id="tf_TFAP4"> 			<data key="type">tf</data> 			<data key="label">TFAP4</data> 		</node> 		<node id="tf_MXI1"> 			<data key="type">tf</data> 			<data key="label">MXI1</data> 		</node> 		<node id="tf_TEAD4"> 			<data key="type">tf</data> 			<data key="label">TEAD4</data> 		</node> 		<node id="tf_ERF"> 			<data key="type">tf</data> 			<data key="label">ERF</data> 		</node> 		<node id="tf_BBX"> 			<data key="type">tf</data> 			<data key="label">BBX</data> 		</node> 		<node id="tf_ZNF644"> 			<data key="type">tf</data> 			<data key="label">ZNF644</data> 		</node> 		<node id="tf_RBPJ"> 			<data key="type">tf</data> 			<data key="label">RBPJ</data> 		</node> 		<node id="tf_ZNF507"> 			<data key="type">tf</data> 			<data key="label">ZNF507</data> 		</node> 		<node id="tf_FOXM1"> 			<data key="type">tf</data> 			<data key="label">FOXM1</data> 		</node> 		<node id="tf_PLAGL1"> 			<data key="type">tf</data> 			<data key="label">PLAGL1</data> 		</node> 		<node id="tf_BNC1"> 			<data key="type">tf</data> 			<data key="label">BNC1</data> 		</node> 		<node id="tf_ADNP"> 			<data key="type">tf</data> 			<data key="label">ADNP</data> 		</node> 		<node id="tf_ZNF26"> 			<data key="type">tf</data> 			<data key="label">ZNF26</data> 		</node> 		<node id="tf_ANKZF1"> 			<data key="type">tf</data> 			<data key="label">ANKZF1</data> 		</node> 		<node id="tf_NFKBIL2"> 			<data key="type">tf</data> 			<data key="label">NFKBIL2</data> 		</node> 		<node id="tf_ZNF451"> 			<data key="type">tf</data> 			<data key="label">ZNF451</data> 		</node> 		<node id="tf_E2F4"> 			<data key="type">tf</data> 			<data key="label">E2F4</data> 		</node> 		<node id="tf_FOXA1"> 			<data key="type">tf</data> 			<data key="label">FOXA1</data> 		</node> 		<node id="tf_GON4L"> 			<data key="type">tf</data> 			<data key="label">GON4L</data> 		</node> 		<node id="tf_ZNF828"> 			<data key="type">tf</data> 			<data key="label">ZNF828</data> 		</node> 		<node id="tf_BCL11A"> 			<data key="type">tf</data> 			<data key="label">BCL11A</data> 		</node> 		<node id="tf_CREB1"> 			<data key="type">tf</data> 			<data key="label">CREB1</data> 		</node> 		<node id="tf_ARNTL2"> 			<data key="type">tf</data> 			<data key="label">ARNTL2</data> 		</node> 		<node id="tf_RXRB"> 			<data key="type">tf</data> 			<data key="label">RXRB</data> 		</node> 		<node id="motif_ADNP_IRX_SIX_ZHX"> 			<data key="type">motif</data> 			<data key="label">ADNP_IRX_SIX_ZHX</data> 		</node> 		<node id="motif_TEF"> 			<data key="type">motif</data> 			<data key="label">TEF</data> 		</node> 		<node id="motif_FOXQ1"> 			<data key="type">motif</data> 			<data key="label">FOXQ1</data> 		</node> 		<node id="motif_TEAD1"> 			<data key="type">motif</data> 			<data key="label">TEAD1</data> 		</node> 		<node id="motif_SNAI1..3"> 			<data key="type">motif</data> 			<data key="label">SNAI1..3</data> 		</node> 		<node id="motif_NFY{A,B,C}"> 			<data key="type">motif</data> 			<data key="label">NFY{A,B,C}</data> 		</node> 		<node id="motif_E2F1..5"> 			<data key="type">motif</data> 			<data key="label">E2F1..5</data> 		</node> 		<node id="motif_CDC5L"> 			<data key="type">motif</data> 			<data key="label">CDC5L</data> 		</node> 		<node id="motif_RBPJ"> 			<data key="type">motif</data> 			<data key="label">RBPJ</data> 		</node> 		<node id="motif_bHLH_family"> 			<data key="type">motif</data> 			<data key="label">bHLH_family</data> 		</node> 		<node id="motif_POU2F1..3"> 			<data key="type">motif</data> 			<data key="label">POU2F1..3</data> 		</node> 		<node id="motif_TFDP1"> 			<data key="type">motif</data> 			<data key="label">TFDP1</data> 		</node> 		<node id="motif_ZNF143"> 			<data key="type">motif</data> 			<data key="label">ZNF143</data> 		</node> 		<node id="motif_TP53"> 			<data key="type">motif</data> 			<data key="label">TP53</data> 		</node> 	</graph> </graphml>';
 			var z_min = 0;
 			var z_max = 1;
@@ Line 117: / Line 114: @@
 				var target = event.target;
-				var lurl = "https://fantom5-collaboration.gsc.riken.jp/resource_browser/RB_SearchResults?sq="+target.data["id"];
+				var lurl = "/resource_browser/RB_SearchResults?sq="+target.data["id"];
 				//window.location = lurl;
 				alert(lurl);
@@ Line 343: / Line 340: @@
 			// initialization options
 			var options = {
-				swfPath: "swf/CytoscapeWeb",
+				//swfPath: "swf/CytoscapeWeb",
-				flashInstallerPath: "swf/playerProductInstall"
+				//flashInstallerPath: "swf/playerProductInstall"
-                 //swfPath: "/resource_browser/rb_js/cytoscapeweb/swf/CytoscapeWeb",
+                 swfPath: "/resource_browser/rb_js/cytoscapeweb/swf/CytoscapeWeb",
-                 //flashInstallerPath: "/resource_browser/rb_js/cytoscapeweb/swf/playerProductInstall"
+                 flashInstallerPath: "/resource_browser/rb_js/cytoscapeweb/swf/playerProductInstall"
              };

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Cytoscape test3: Difference between revisions

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