UBERON:0000982: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000982
|name=skeletal joint
|namespace=
|def="Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are int...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:10, 15 June 2012
| Name: | skeletal joint | ||
|---|---|---|---|
| Definition: | "Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint." [FMA:7490, Wikipedia:Joint, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"articular joint" RELATED [BTO:0001686] "joint" BROAD [FMA:7490] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596 | ||
| Subset: |
organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004765(skeletal element),UBERON:0004905(articulation) |
|---|---|
| part_of: | UBERON:0004770(articular system) |
Children
| is a: | UBERON:0002217 (synovial joint),UBERON:0003657 (limb joint),UBERON:0011134 (nonsynovial joint) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10267-104D6
- 10295-104G7 (cruciate ligament, donor2)
- 10323-105A8
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000982 (skeletal joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.05e-102 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_b1ecf261b483c6257460cdb5e61692be | p@chr3:174737010..174737023, + |
| 5.05e-102 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_b1ecf261b483c6257460cdb5e61692be | p@chr3:174737010..174737023, + |
| 6.68e-88 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_954cbe2f4583cab6ca97335e6355beb5 | p4@PAX1 |
| 6.68e-88 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_954cbe2f4583cab6ca97335e6355beb5 | p4@PAX1 |
| 5.7e-81 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_3a6d6fd927550657ed2cf47799211a0f | p15@SNED1 |
| 5.7e-81 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_3a6d6fd927550657ed2cf47799211a0f | p15@SNED1 |
| 3.87e-62 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_16b8648578283daf3e4c9dda5487b9ad | p@chr5:30104176..30104187, - |
| 3.87e-62 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_16b8648578283daf3e4c9dda5487b9ad | p@chr5:30104176..30104187, - |
| 5.39e-52 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_27390d93e0ae3513d383cfc7c3e635a8 | p1@ENST00000436845 |
| 5.39e-52 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_27390d93e0ae3513d383cfc7c3e635a8 | p1@ENST00000436845 |
| 5.25e-50 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_a064797364a574ba49f27ccf254ba349 | p6@SIX4 |
| 5.25e-50 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_a064797364a574ba49f27ccf254ba349 | p6@SIX4 |
| 1.71e-49 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_66eadedaa2566d6970c24e73df81bb8c | p4@NKX3-2 |
| 1.71e-49 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_66eadedaa2566d6970c24e73df81bb8c | p4@NKX3-2 |
| 4.01e-47 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_6fcebd35458a11de934ecb03fbb75672 | p@chr5:140887761..140887777, + |
| 4.01e-47 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_6fcebd35458a11de934ecb03fbb75672 | p@chr5:140887761..140887777, + |
| 3.73e-45 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_3ae92f11804214545e7d59030247fed4 | p@chr2:242009429..242009432, + |
| 3.73e-45 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_3ae92f11804214545e7d59030247fed4 | p@chr2:242009429..242009432, + |
| 5.04e-45 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_b3e0fd9188c1f214584e0fa4f1c7a0a1 | p@chr9:114135497..114135526, - |
| 5.04e-45 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_b3e0fd9188c1f214584e0fa4f1c7a0a1 | p@chr9:114135497..114135526, - |
| 1.45e-44 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_510fcef1366d329167042ac2d30aa366 | p@chr2:241897125..241897142, - |
| 1.45e-44 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_510fcef1366d329167042ac2d30aa366 | p@chr2:241897125..241897142, - |
| 5.55e-44 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_7cb74435875f0979b11e68c1e10189b0 | p@chr3:80727046..80727051, - |
| 5.55e-44 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_7cb74435875f0979b11e68c1e10189b0 | p@chr3:80727046..80727051, - |
| 5.66e-42 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_701720b73d744b2d3f0853e554fb5754 | p@chr7:100202784..100202796, - |
| 5.66e-42 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_701720b73d744b2d3f0853e554fb5754 | p@chr7:100202784..100202796, - |
| 9.63e-42 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_3482ce59ea7e0ef30e61dd09f0c58cbd | p20@CAPZB |
| 9.63e-42 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_3482ce59ea7e0ef30e61dd09f0c58cbd | p20@CAPZB |
| 2.13e-39 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_57a4c69b200305e1cd70b23f2ad439bc | p@chr1:19778678..19778689, - |
| 2.13e-39 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_57a4c69b200305e1cd70b23f2ad439bc | p@chr1:19778678..19778689, - |
| 1.04e-37 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_47c9a74722964c8683496907625bdacf | p@chr2:241897189..241897221, - |
| 1.04e-37 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_47c9a74722964c8683496907625bdacf | p@chr2:241897189..241897221, - |
| 1.51e-37 | FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_8475d26d970679fc109de4870a5a58d4 | p22@SNED1 |
| 1.51e-37 | FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_8475d26d970679fc109de4870a5a58d4 | p22@SNED1 |
| 3.4e-36 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_bd256bfad7ee90cc9618e352df4555c5 | p1@uc010aki.1 |
| 3.4e-36 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_bd256bfad7ee90cc9618e352df4555c5 | p1@uc010aki.1 |
| 6.5e-34 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_7ec5d95a9316539fcea2f0e6ed75681e | p31@SEMA3C |
| 6.5e-34 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_7ec5d95a9316539fcea2f0e6ed75681e | p31@SEMA3C |
| 9.08e-34 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_ef35dd31c71fd7b20f2a46f5220264d5 | p3@uc010aki.1 |
| 9.08e-34 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_ef35dd31c71fd7b20f2a46f5220264d5 | p3@uc010aki.1 |
| 1.15e-32 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_c6717be6bc0c3c41cc425ef5433c083c | p3@PAX1 |
| 1.15e-32 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_c6717be6bc0c3c41cc425ef5433c083c | p3@PAX1 |
| 1.77e-32 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_b3319de5309e55dbba91e36b0a8b25da | p@chr10:81923378..81923389, - |
| 1.77e-32 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_b3319de5309e55dbba91e36b0a8b25da | p@chr10:81923378..81923389, - |
| 2.19e-32 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_dfd994c339fe899a84aa61e00d6fbcdb | p@chr2:12248310..12248334, - |
| 2.19e-32 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_dfd994c339fe899a84aa61e00d6fbcdb | p@chr2:12248310..12248334, - |
| 8.44e-32 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_97d0f3b2af38cf04b5a1669d02f67564 | p19@HDAC9 |
| 8.44e-32 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_97d0f3b2af38cf04b5a1669d02f67564 | p19@HDAC9 |
| 3.34e-31 | FFCP PHASE2:Hg19::chr20:43343610..43343645,+#_95a7e7bab68d711268570331b1700d7e | p5@WISP2 |
| 3.34e-31 | FFCP PHASE1:Hg19::chr20:43343610..43343645,+#_95a7e7bab68d711268570331b1700d7e | p5@WISP2 |
| 1.1e-30 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_25a00504750ff441e16444a290823341 | p@chr7:158224707..158224729, - |
| 1.1e-30 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_25a00504750ff441e16444a290823341 | p@chr7:158224707..158224729, - |
| 4.93e-30 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_1c45ffec85a00cf30068ae796e5559c0 | p@chr1:65888177..65888194, + |
| 4.93e-30 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_1c45ffec85a00cf30068ae796e5559c0 | p@chr1:65888177..65888194, + |
| 1.3e-29 | FFCP PHASE1:Hg19::chr2:241937787..241937803,+#_4ba210b1c2eb552e30ea71cd43d4c366 | p5@SNED1 |
| 1.3e-29 | FFCP PHASE2:Hg19::chr2:241937787..241937803,+#_4ba210b1c2eb552e30ea71cd43d4c366 | p5@SNED1 |
| 6.39e-29 | FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_ccb8b1d4b4efe981a8712c45fab8da08 | p@chr17:38613285..38613298, - |
| 6.39e-29 | FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_ccb8b1d4b4efe981a8712c45fab8da08 | p@chr17:38613285..38613298, - |
| 6.71e-29 | FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_d2d124841fc83868f8ec5cd24a2c660e | p34@LPAR1 |
| 6.71e-29 | FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_d2d124841fc83868f8ec5cd24a2c660e | p34@LPAR1 |
| 1.23e-28 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_5c8403bef8ac1b1d7b095c65a1097c95 | p3@NKX3-2 |
| 1.23e-28 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_5c8403bef8ac1b1d7b095c65a1097c95 | p3@NKX3-2 |
| 1.72e-28 | FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_9755f19284a873f84fa37a6b47130880 | p6@WISP2 |
| 1.72e-28 | FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_9755f19284a873f84fa37a6b47130880 | p6@WISP2 |
| 1.13e-27 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_1b3082048b573a26dcd0d7ab0b091227 | p1@MGC27382 |
| 1.13e-27 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_1b3082048b573a26dcd0d7ab0b091227 | p1@MGC27382 |
| 3.37e-27 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_fa9b7b64171dcec5b717d3de4e352bcd | p18@HDAC9 |
| 3.37e-27 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_fa9b7b64171dcec5b717d3de4e352bcd | p18@HDAC9 |
| 9.5e-27 | FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_d0b54eb3c8ed6142b2a46aa604db10a2 | p@chr8:25337491..25337504, + |
| 9.5e-27 | FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_d0b54eb3c8ed6142b2a46aa604db10a2 | p@chr8:25337491..25337504, + |
| 2.17e-26 | FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_e47e486b3e6360ee7e09add98eab25df | p@chr14:61113228..61113233, - |
| 2.17e-26 | FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_e47e486b3e6360ee7e09add98eab25df | p@chr14:61113228..61113233, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr9:33028063..33028067, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr2:181751144..181751146, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr1:172134755..172134764, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr13:24914614..24914622, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_ecbc0d75eaf45575b2714e00d4874f7a | p1@ENST00000517363 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_ecbc0d75eaf45575b2714e00d4874f7a | p9@SKOR1 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr2:181751144..181751146, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_ecbc0d75eaf45575b2714e00d4874f7a | p1@ENST00000517363 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr9:33028063..33028067, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr12:130786785..130786827, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr1:172134667..172134711, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_ecbc0d75eaf45575b2714e00d4874f7a | p9@SKOR1 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr1:172134667..172134711, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr1:172134736..172134739, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr13:24914614..24914622, - |
| 5.22e-26 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr12:130786785..130786827, - |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr1:172134736..172134739, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_ecbc0d75eaf45575b2714e00d4874f7a | p@chr1:172134755..172134764, + |
| 8.65e-26 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_1198995c9191029adea2359747dc2cbc | p5@PTGFR |
| 8.65e-26 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_1198995c9191029adea2359747dc2cbc | p@chr18:22150956..22150983, + |
| 8.65e-26 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_1198995c9191029adea2359747dc2cbc | p5@PTGFR |
| 8.65e-26 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_1198995c9191029adea2359747dc2cbc | p@chr18:22150956..22150983, + |
| 9.05e-26 | FFCP PHASE1:Hg19::chr6:1626414..1626429,-#_13fee1f9cf825426ff98a937d49d53fd | p7@GMDS |
| 9.05e-26 | FFCP PHASE2:Hg19::chr6:1626414..1626429,-#_13fee1f9cf825426ff98a937d49d53fd | p7@GMDS |
| 1.44e-25 | FFCP PHASE1:Hg19::chr9:113798435..113798442,-#_8aef5617c783673d961017fc8baebdfe | p42@LPAR1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr9:113798435..113798442,-#_8aef5617c783673d961017fc8baebdfe | p42@LPAR1 |
| 1.56e-25 | FFCP PHASE1:Hg19::chr5:17743903..17743914,+#_74496285239d2ae33f689d48d05eea00 | p@chr5:17743903..17743914, + |
| 1.56e-25 | FFCP PHASE2:Hg19::chr5:17743903..17743914,+#_74496285239d2ae33f689d48d05eea00 | p@chr5:17743903..17743914, + |
