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|id=CL:0000084
|id=CL:0000084
|name=T cell
|name=T cell
|namespace=cell
|namespace=efo
|def="A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
|def="A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
|xref=BTO:0000782;;FMA:62870
|xref=BTO:0000782;;FMA:62870
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:36, 15 June 2012

Name:T cell
Namespace:efo
Definition:"A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [GOC:add, GOC:tfm, ISBN:0781735149]
Xrefs:
links:

BTO:0000782

FMA:62870
Synonyms: "immature T cell" RELATED []
"mature T cell" RELATED []
"T lymphocyte" EXACT []
"T-cell" EXACT []
"T-lymphocyte" EXACT []
Alt_id: CL:0000804
CL:0000812


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000542(lymphocyte)
disjoint_from:CL:0000623(natural killer cell),CL:0000945(lymphocyte of B lineage)
develops_from:CL:0000827(pro-T cell)



Children


is a:CL:0000789 (alpha-beta T cell),CL:0000798 (gamma-delta T cell),CL:0002419 (mature T cell),CL:0002420 (immature T cell),FF:10429-106D6 (acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL),FF:10795-110I3 (anaplastic large cell lymphoma cell line:Ki-JK)
derives from:FF:0101014 (Mo-T cell sample),FF:0102504 (T-lymphoblastic leukemia cell line sample),FF:0103212 (T-lymphoma cell line sample),FF:0103505 (T-cell chronic lymphocytic leukemia cell sample),FF:0300104 (EBF KO HPCs induced to T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000084 (T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.9e-89FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3e5373ddbf2696f8d42b906640f28145p@chr5:35859622..35859626, +
2.9e-89FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3e5373ddbf2696f8d42b906640f28145p@chr5:35859622..35859626, +
1.02e-73FFCP PHASE1:Mm9::chr4:63522330..63522352,-#_f5417ed8f8a66e957675c1a398b68235p4@Tnfsf8
1.02e-73FFCP PHASE2:Mm9::chr4:63522330..63522352,-#_f5417ed8f8a66e957675c1a398b68235p4@Tnfsf8
1.33e-72FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_bb2a0505edfed876e1834016a7cabc63p@chr2:87053288..87053295, -
1.33e-72FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_bb2a0505edfed876e1834016a7cabc63p@chr2:87053288..87053295, -
1.48e-71FFCP PHASE2:Hg19::chr17:80085772..80085810,-#_adce0fdab6c67047cd6e093091928973p@chr17:80085772..80085810, -
1.48e-71FFCP PHASE1:Hg19::chr17:80085772..80085810,-#_adce0fdab6c67047cd6e093091928973p@chr17:80085772..80085810, -
6.78e-71FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_40d0b8a48eb47945afa2246caac5638dp3@Tnfrsf25
6.78e-71FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_40d0b8a48eb47945afa2246caac5638dp@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_40d0b8a48eb47945afa2246caac5638dp1@uc007tsm.1
6.78e-71FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_40d0b8a48eb47945afa2246caac5638dp@chr19:10869146..10869168, -
6.78e-71FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_40d0b8a48eb47945afa2246caac5638dp1@ENSMUST00000103733
6.78e-71FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_40d0b8a48eb47945afa2246caac5638dp@chr6:48637679..48637692, +
6.78e-71FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_40d0b8a48eb47945afa2246caac5638dp@chr11:99015330..99015341, -
6.78e-71FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_40d0b8a48eb47945afa2246caac5638dp1@uc007tsm.1
6.78e-71FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_40d0b8a48eb47945afa2246caac5638dp@chr19:10869146..10869168, -
6.78e-71FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_40d0b8a48eb47945afa2246caac5638dp1@ENSMUST00000103733
6.78e-71FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_40d0b8a48eb47945afa2246caac5638dp@chr4:32339511..32339518, +
6.78e-71FFCP PHASE1:Mm9::chr11:11590836..11590851,+#_40d0b8a48eb47945afa2246caac5638dp@chr11:11590836..11590851, +
6.78e-71FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_40d0b8a48eb47945afa2246caac5638dp@chr11:99015330..99015341, -
6.78e-71FFCP PHASE2:Mm9::chr11:11590836..11590851,+#_40d0b8a48eb47945afa2246caac5638dp@chr11:11590836..11590851, +
6.78e-71FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_40d0b8a48eb47945afa2246caac5638dp3@Tnfrsf25
6.78e-71FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_40d0b8a48eb47945afa2246caac5638dp@chr4:32339511..32339518, +
2.06e-70FFCP PHASE1:Hg19::chr11:118186681..118186704,-#_27efe70ff0be6e615a491ac20bb2033fp1@CU690625
2.06e-70FFCP PHASE2:Hg19::chr11:118186681..118186704,-#_27efe70ff0be6e615a491ac20bb2033fp1@CU690625
1.31e-69FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_4666695ebfce438a5d0fee2893fccb6bp10@HNRPLL
1.31e-69FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_4666695ebfce438a5d0fee2893fccb6bp10@HNRPLL
6.71e-69FFCP PHASE2:Hg19::chr17:29637535..29637559,+#_25028c5d340b78a62633755d70174485p@chr17:29637535..29637559, +
6.71e-69FFCP PHASE1:Hg19::chr17:29637535..29637559,+#_25028c5d340b78a62633755d70174485p@chr17:29637535..29637559, +
7.62e-69FFCP PHASE2:Mm9::chr4:63521957..63521980,-#_0aa650052ccb379c5e091619ea0a58e2p@chr4:63521957..63521980, -
7.62e-69FFCP PHASE1:Mm9::chr4:63521957..63521980,-#_0aa650052ccb379c5e091619ea0a58e2p@chr4:63521957..63521980, -
2.06e-68FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_71447f59f395d1384667cd523bcf8d17p@chr15:89179440..89179457, -
2.06e-68FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_71447f59f395d1384667cd523bcf8d17p@chr15:89179440..89179457, -
2.88e-67FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_b20c926156cbd2218ba9409ef092ec56p@chr5:35854487..35854499, -
2.88e-67FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_b20c926156cbd2218ba9409ef092ec56p@chr5:35854487..35854499, -
6.74e-66FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_ac14bd5aa349d761172bcbf2b304f24fp@chr4:32335511..32335532, +
6.74e-66FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_ac14bd5aa349d761172bcbf2b304f24fp@chr4:32335511..32335532, +
9.47e-66FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_cd57c4c18eddf90ca098e7890e77769fp@chr5:35854779..35854826, +
9.47e-66FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_cd57c4c18eddf90ca098e7890e77769fp@chr5:35854779..35854826, +
1.04e-65FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_6961082ee5c562330b6674e9445f3168p@chr4:103551892..103551903, -
1.04e-65FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_6961082ee5c562330b6674e9445f3168p@chr4:103551892..103551903, -
3.53e-65FFCP PHASE2:Hg19::chr16:3117688..3117736,+#_e93d788317a14d62c3a719b31a87fa0fp7@IL32
3.53e-65FFCP PHASE1:Hg19::chr16:3117688..3117736,+#_e93d788317a14d62c3a719b31a87fa0fp7@IL32
7.34e-65FFCP PHASE1:Hg19::chr1:90075464..90075470,-#_c4c3c644da1fe69e145c8b9ab54084b4p@chr1:90075464..90075470, -
7.34e-65FFCP PHASE2:Hg19::chr1:90075464..90075470,-#_c4c3c644da1fe69e145c8b9ab54084b4p@chr1:90075464..90075470, -
1.94e-64FFCP PHASE2:Mm9::chr6:129225479..129225509,+#_470800bd27dee3af7ac5d6353664b0b6p@chr6:129225479..129225509, +
1.94e-64FFCP PHASE1:Mm9::chr6:129225479..129225509,+#_470800bd27dee3af7ac5d6353664b0b6p@chr6:129225479..129225509, +
3.0e-64FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_77ad1a116852b12dc1a5bf98e675a7e0p1@GTSCR1
3.0e-64FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_77ad1a116852b12dc1a5bf98e675a7e0p1@GTSCR1
3.36e-64FFCP PHASE2:Mm9::chr4:63522312..63522327,-#_9e420efd5e6dec154445d4ee499b445cp3@Tnfsf8
3.36e-64FFCP PHASE1:Mm9::chr4:63522312..63522327,-#_9e420efd5e6dec154445d4ee499b445cp3@Tnfsf8
3.94e-64FFCP PHASE1:Hg19::chr1:32716843..32716848,+#_3793bab7eb1f1220e94adeb733817998p6@LCK
3.94e-64FFCP PHASE2:Hg19::chr1:32716843..32716848,+#_3793bab7eb1f1220e94adeb733817998p6@LCK
4.15e-64FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_22a862300059ad214fc339272ae5044dp1@ENSMUST00000103714
4.15e-64FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_22a862300059ad214fc339272ae5044dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_22a862300059ad214fc339272ae5044dp@chr14:56207154..56207165, -
4.15e-64FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_22a862300059ad214fc339272ae5044dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_22a862300059ad214fc339272ae5044dp1@ENSMUST00000103714
4.15e-64FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_22a862300059ad214fc339272ae5044dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_22a862300059ad214fc339272ae5044dp@chr7:31935025..31935037, +
4.15e-64FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_22a862300059ad214fc339272ae5044dp@chr12:74704873..74704900, +
4.15e-64FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_22a862300059ad214fc339272ae5044dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_22a862300059ad214fc339272ae5044dp@chr8:84082784..84082795, +
4.15e-64FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_22a862300059ad214fc339272ae5044dp@chr5:123440486..123440504, -
4.15e-64FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_22a862300059ad214fc339272ae5044dp@chr14:56207154..56207165, -
4.17e-64FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_99d53a24ee9b894ec2a8af68fd29aad7p@chr5:35856882..35856909, -
4.17e-64FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_99d53a24ee9b894ec2a8af68fd29aad7p@chr5:35856882..35856909, -
4.91e-64FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_766fdfbe19620f2ec017494642b4e5e2p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_766fdfbe19620f2ec017494642b4e5e2p@chr4:32422919..32422935, +
4.91e-64FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_766fdfbe19620f2ec017494642b4e5e2p@chr4:32422919..32422935, +
4.91e-64FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_766fdfbe19620f2ec017494642b4e5e2p@chr14:54838649..54838660, +
4.91e-64FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_766fdfbe19620f2ec017494642b4e5e2p@chr5:123440767..123440778, +
4.91e-64FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_766fdfbe19620f2ec017494642b4e5e2p@chr14:54838649..54838660, +
5.81e-64FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_24afa4d0e415097e0c7a89e7980771b1p@chr15:27786221..27786240, -
5.81e-64FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_24afa4d0e415097e0c7a89e7980771b1p@chr15:27786221..27786240, -
5.87e-64FFCP PHASE2:Hg19::chr2:98330009..98330020,+#_30f32253b7202840cab0e438ea1b83c3p3@ZAP70
5.87e-64FFCP PHASE1:Hg19::chr2:98330009..98330020,+#_30f32253b7202840cab0e438ea1b83c3p3@ZAP70
6.87e-64FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_c5b38440e25630d713c506421eda4a07p@chr6:99215016..99215036, +
6.87e-64FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_c5b38440e25630d713c506421eda4a07p@chr6:99215016..99215036, +
6.87e-64FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_c5b38440e25630d713c506421eda4a07p@chr3:103672068..103672090, -
6.87e-64FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_c5b38440e25630d713c506421eda4a07p@chr3:103672068..103672090, -
7.69e-64FFCP PHASE2:Mm9::chr1:108608936..108608961,-#_3f4f9569fd7a3dc99b2dd6f784fcb457p@chr1:108608936..108608961, -
7.69e-64FFCP PHASE1:Mm9::chr1:108608936..108608961,-#_3f4f9569fd7a3dc99b2dd6f784fcb457p@chr1:108608936..108608961, -
8.12e-64FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_dc44f20f132e6869a079fed164df5b26p@chr6:48634453..48634468, -
8.12e-64FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_dc44f20f132e6869a079fed164df5b26p@chr6:48634453..48634468, -
1.13e-63FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_4b753df3aef00ebc1881f057a2e0a6d3p5@uc007vxz.1
1.13e-63FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_4b753df3aef00ebc1881f057a2e0a6d3p5@uc007vxz.1
1.59e-63FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_8fdf561768c7970ab97690e00fa05c37p@chr7:132751140..132751183, +
1.59e-63FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_8fdf561768c7970ab97690e00fa05c37p@chr7:132751140..132751183, +
4.29e-63FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_f41d676474f7827234a2ac37688c5b27p4@ENSMUST00000148466, p4@uc008zmw.1
4.29e-63FFCP PHASE1:Mm9::chr4:155405070..155405083,+#_f41d676474f7827234a2ac37688c5b27p@chr4:155405070..155405083, +
4.29e-63FFCP PHASE1:Mm9::chr6:99045597..99045607,-#_f41d676474f7827234a2ac37688c5b27p@chr6:99045597..99045607, -
4.29e-63FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_f41d676474f7827234a2ac37688c5b27p@chr1:140069290..140069308, +
4.29e-63FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f41d676474f7827234a2ac37688c5b27p@chr11:46200242..46200255, +
4.29e-63FFCP PHASE1:Mm9::chr9:32539732..32539750,+#_f41d676474f7827234a2ac37688c5b27p@chr9:32539732..32539750, +
4.29e-63FFCP PHASE1:Mm9::chr4:155396384..155396395,-#_f41d676474f7827234a2ac37688c5b27p@chr4:155396384..155396395, -
4.29e-63FFCP PHASE1:Mm9::chr4:6830911..6830925,-#_f41d676474f7827234a2ac37688c5b27p@chr4:6830911..6830925, -
4.29e-63FFCP PHASE2:Mm9::chr1:167720341..167720362,+#_f41d676474f7827234a2ac37688c5b27p@chr1:167720341..167720362, +
4.29e-63FFCP PHASE1:Mm9::chr6:125215605..125215616,+#_f41d676474f7827234a2ac37688c5b27p3@4930417O13Rik

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