Personal tools

UBERON:0000996: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 4: Line 4:
|namespace=
|namespace=
|def="a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
|def="a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
|xref=BTO:0000243;;EFO:0000976;;EMAPA:18986;;EV:0100117;;FMA:19949;;GAID:381;;galen:Vagina;;http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg;;MA:0000394;;MAT:0000128;;MESH:A.05.360.319.779;;MIAA:0000128;;ncithesaurus:Vagina;;OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA;;SCTID:181441005;;VHOG:0001138
|xref=BTO:0000243;;EFO:0000976;;EMAPA:18986;;EV:0100117;;FMA:19949;;GAID:381;;galen:Vagina;;http://upload.wikimedia.org/wikipedia/commons/1/1b/Illu_repdt_female.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg;;MA:0000394;;MAT:0000128;;MESH:A.05.360.319.779;;MIAA:0000128;;ncithesaurus:Vagina;;OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA;;SCTID:181441005;;VHOG:0001138
|is_a=UBERON:0000077;;UBERON:0003975
|is_a=UBERON:0000077;;UBERON:0003975
|synonym=
|synonym=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000164
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0000474
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:58, 26 June 2012

Name:vagina
Definition:"a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
Xrefs:
links:

BTO:0000243
EFO:0000976
EMAPA:18986
EV:0100117
FMA:19949
GAID:381
galen:Vagina
[1]
[2]
MA:0000394
MAT:0000128
MESH:A.05.360.319.779
MIAA:0000128
ncithesaurus:Vagina
OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
SCTID:181441005

VHOG:0001138
Comments:Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688
Alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0003975(internal female genitalia)



Children

is a:FF:0102936 (vaginal cell line)
derives from:FF:0010204 (human vagina - adult sample),FF:0011438 (mouse vagina- adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000996 (vagina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE2:Hg19::chr7:75926905..75926913,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75926905..75926913, -
2.55e-98FFCP PHASE1:Hg19::chr7:75926905..75926913,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75926905..75926913, -
2.55e-98FFCP PHASE2:Hg19::chr7:75927025..75927030,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75927025..75927030, -
2.55e-98FFCP PHASE1:Hg19::chr7:75927025..75927030,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75927025..75927030, -
2.55e-98FFCP PHASE2:Hg19::chr9:131871258..131871269,-#_ad475468fc4395f13e60290ec96bc3f4p3@CRAT
2.55e-98FFCP PHASE1:Hg19::chr9:131871258..131871269,-#_ad475468fc4395f13e60290ec96bc3f4p3@CRAT
2.55e-98FFCP PHASE2:Hg19::chr16:1344323..1344328,-#_ad475468fc4395f13e60290ec96bc3f4p@chr16:1344323..1344328, -
2.55e-98FFCP PHASE1:Hg19::chr12:116200801..116200808,-#_ad475468fc4395f13e60290ec96bc3f4p@chr12:116200801..116200808, -
2.55e-98FFCP PHASE1:Hg19::chr16:1344323..1344328,-#_ad475468fc4395f13e60290ec96bc3f4p@chr16:1344323..1344328, -
2.55e-98FFCP PHASE2:Hg19::chr12:116200801..116200808,-#_ad475468fc4395f13e60290ec96bc3f4p@chr12:116200801..116200808, -
3.07e-86FFCP PHASE2:Mm9::chr11:100107430..100107473,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107430..100107473, -
3.07e-86FFCP PHASE2:Mm9::chr17:27866019..27866031,-#_560b667da5c4aa093ce842065ef8e7f6p2@Spdef
3.07e-86FFCP PHASE2:Mm9::chr15:101506963..101506974,+#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506963..101506974, +
3.07e-86FFCP PHASE1:Mm9::chr17:24172292..24172300,+#_560b667da5c4aa093ce842065ef8e7f6p@chr17:24172292..24172300, +
3.07e-86FFCP PHASE1:Mm9::chr15:101506963..101506974,+#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506963..101506974, +
3.07e-86FFCP PHASE1:Mm9::chr7:123747566..123747567,+#_560b667da5c4aa093ce842065ef8e7f6p@chr7:123747566..123747567, +
3.07e-86FFCP PHASE1:Mm9::chr18:64859665..64859669,+#_560b667da5c4aa093ce842065ef8e7f6p@chr18:64859665..64859669, +
3.07e-86FFCP PHASE1:Mm9::chr11:100107526..100107540,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107526..100107540, -
3.07e-86FFCP PHASE2:Mm9::chr4:138419516..138419520,-#_560b667da5c4aa093ce842065ef8e7f6p14@Pla2g5
3.07e-86FFCP PHASE2:Mm9::chr11:100107526..100107540,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107526..100107540, -
3.07e-86FFCP PHASE2:Mm9::chr15:101506516..101506534,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506516..101506534, -
3.07e-86FFCP PHASE1:Mm9::chr12:89223836..89223840,+#_560b667da5c4aa093ce842065ef8e7f6p@chr12:89223836..89223840, +
3.07e-86FFCP PHASE1:Mm9::chr3:95514619..95514622,-#_560b667da5c4aa093ce842065ef8e7f6p@chr3:95514619..95514622, -
3.07e-86FFCP PHASE2:Mm9::chr3:95514619..95514622,-#_560b667da5c4aa093ce842065ef8e7f6p@chr3:95514619..95514622, -
3.07e-86FFCP PHASE1:Mm9::chr18:73894503..73894506,-#_560b667da5c4aa093ce842065ef8e7f6p@chr18:73894503..73894506, -
3.07e-86FFCP PHASE1:Mm9::chr11:100108943..100108977,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100108943..100108977, -
3.07e-86FFCP PHASE2:Mm9::chr15:101522998..101523006,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101522998..101523006, -
3.07e-86FFCP PHASE1:Mm9::chr15:101522998..101523006,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101522998..101523006, -
3.07e-86FFCP PHASE1:Mm9::chr11:100065595..100065616,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100065595..100065616, -
3.07e-86FFCP PHASE2:Mm9::chr11:100108943..100108977,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100108943..100108977, -
3.07e-86FFCP PHASE1:Mm9::chr15:101506516..101506534,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506516..101506534, -
3.07e-86FFCP PHASE2:Mm9::chr18:73894503..73894506,-#_560b667da5c4aa093ce842065ef8e7f6p@chr18:73894503..73894506, -
3.07e-86FFCP PHASE2:Mm9::chr5:86802562..86802592,-#_560b667da5c4aa093ce842065ef8e7f6p6@Tmprss11d
3.07e-86FFCP PHASE2:Mm9::chr11:100065595..100065616,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100065595..100065616, -
3.07e-86FFCP PHASE2:Mm9::chr17:24172292..24172300,+#_560b667da5c4aa093ce842065ef8e7f6p@chr17:24172292..24172300, +
3.07e-86FFCP PHASE1:Mm9::chr4:138419516..138419520,-#_560b667da5c4aa093ce842065ef8e7f6p14@Pla2g5
3.07e-86FFCP PHASE1:Mm9::chr17:27866019..27866031,-#_560b667da5c4aa093ce842065ef8e7f6p2@Spdef
3.07e-86FFCP PHASE2:Mm9::chr18:64859665..64859669,+#_560b667da5c4aa093ce842065ef8e7f6p@chr18:64859665..64859669, +
3.07e-86FFCP PHASE1:Mm9::chr5:86802562..86802592,-#_560b667da5c4aa093ce842065ef8e7f6p6@Tmprss11d
3.07e-86FFCP PHASE2:Mm9::chr12:89223836..89223840,+#_560b667da5c4aa093ce842065ef8e7f6p@chr12:89223836..89223840, +
3.07e-86FFCP PHASE2:Mm9::chr15:101506878..101506897,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506878..101506897, -
3.07e-86FFCP PHASE1:Mm9::chr15:101506878..101506897,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506878..101506897, -
3.07e-86FFCP PHASE2:Mm9::chr7:123747566..123747567,+#_560b667da5c4aa093ce842065ef8e7f6p@chr7:123747566..123747567, +
3.07e-86FFCP PHASE1:Mm9::chr11:100107430..100107473,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107430..100107473, -
1.23e-66FFCP PHASE2:Hg19::chr19:56746179..56746184,+#_f2adfd0f6afb98331d4d65baedb476f6p@chr19:56746179..56746184, +
1.23e-66FFCP PHASE1:Hg19::chr19:56746179..56746184,+#_f2adfd0f6afb98331d4d65baedb476f6p@chr19:56746179..56746184, +
1.23e-66FFCP PHASE2:Hg19::chr7:18126511..18126516,+#_f2adfd0f6afb98331d4d65baedb476f6p31@HDAC9
1.23e-66FFCP PHASE1:Hg19::chr7:18126511..18126516,+#_f2adfd0f6afb98331d4d65baedb476f6p31@HDAC9
2.39e-66FFCP PHASE2:Hg19::chr14:64761275..64761283,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p14@ESR2
2.39e-66FFCP PHASE1:Hg19::chr14:64761275..64761283,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p14@ESR2
2.39e-66FFCP PHASE2:Hg19::chr19:49061764..49061766,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p@chr19:49061764..49061766, -
2.39e-66FFCP PHASE1:Hg19::chr19:49061764..49061766,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p@chr19:49061764..49061766, -
4.66e-66FFCP PHASE2:Hg19::chr19:1021828..1021838,+#_5269c05eb55e78d824969217d9aae469p@chr19:1021828..1021838, +
4.66e-66FFCP PHASE1:Hg19::chr19:1021828..1021838,+#_5269c05eb55e78d824969217d9aae469p@chr19:1021828..1021838, +
4.66e-66FFCP PHASE2:Hg19::chr7:100884779..100884815,-#_5269c05eb55e78d824969217d9aae469p7@FIS1
4.66e-66FFCP PHASE1:Hg19::chr7:100884779..100884815,-#_5269c05eb55e78d824969217d9aae469p7@FIS1
2.42e-50FFCP PHASE2:Hg19::chr21:42539377..42539381,+#_9276f9be3a1713c6704a3abc8a478640p2@MIR3197
2.42e-50FFCP PHASE2:Hg19::chr19:55587266..55587275,+#_9276f9be3a1713c6704a3abc8a478640p8@EPS8L1
2.42e-50FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567053..91567066, +
2.42e-50FFCP PHASE1:Hg19::chr21:42539377..42539381,+#_9276f9be3a1713c6704a3abc8a478640p2@MIR3197
2.42e-50FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567053..91567066, +
2.42e-50FFCP PHASE1:Hg19::chr19:55587266..55587275,+#_9276f9be3a1713c6704a3abc8a478640p8@EPS8L1
2.42e-50FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567075..91567084, +
2.42e-50FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567075..91567084, +
3.99e-50FFCP PHASE2:Hg19::chr9:139636619..139636627,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636619..139636627, +
3.99e-50FFCP PHASE1:Hg19::chr9:139636619..139636627,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636619..139636627, +
3.99e-50FFCP PHASE1:Hg19::chr11:72350972..72350982,+#_e42912922140d754abfd2c0a2f5333d5p@chr11:72350972..72350982, +
3.99e-50FFCP PHASE2:Hg19::chr12:48147711..48147719,+#_e42912922140d754abfd2c0a2f5333d5p19@SLC48A1
3.99e-50FFCP PHASE2:Hg19::chr9:130440713..130440724,+#_e42912922140d754abfd2c0a2f5333d5p9@STXBP1
3.99e-50FFCP PHASE2:Hg19::chr11:72350972..72350982,+#_e42912922140d754abfd2c0a2f5333d5p@chr11:72350972..72350982, +
3.99e-50FFCP PHASE1:Hg19::chr9:130440713..130440724,+#_e42912922140d754abfd2c0a2f5333d5p9@STXBP1
3.99e-50FFCP PHASE2:Hg19::chr14:102027518..102027524,-#_e42912922140d754abfd2c0a2f5333d5p@chr14:102027518..102027524, -
3.99e-50FFCP PHASE1:Hg19::chr14:102027518..102027524,-#_e42912922140d754abfd2c0a2f5333d5p@chr14:102027518..102027524, -
3.99e-50FFCP PHASE1:Hg19::chr2:205099700..205099708,-#_e42912922140d754abfd2c0a2f5333d5p2@ENST00000419860
3.99e-50FFCP PHASE2:Hg19::chr9:139636583..139636593,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636583..139636593, +
3.99e-50FFCP PHASE2:Hg19::chr2:205099700..205099708,-#_e42912922140d754abfd2c0a2f5333d5p2@ENST00000419860
3.99e-50FFCP PHASE1:Hg19::chr9:139636583..139636593,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636583..139636593, +
3.99e-50FFCP PHASE1:Hg19::chr12:48147711..48147719,+#_e42912922140d754abfd2c0a2f5333d5p19@SLC48A1
6.58e-50FFCP PHASE1:Hg19::chr12:116200864..116200875,-#_506bdc2a207a52af36b807b445a16d49p@chr12:116200864..116200875, -
6.58e-50FFCP PHASE2:Hg19::chr12:116200864..116200875,-#_506bdc2a207a52af36b807b445a16d49p@chr12:116200864..116200875, -
2.74e-44FFCP PHASE1:Mm9::chr7:50927615..50927622,-#_b487af833fb3944f88fc7040865f113cp@chr7:50927615..50927622, -
2.74e-44FFCP PHASE2:Mm9::chr5:86802426..86802432,-#_b487af833fb3944f88fc7040865f113cp4@Tmprss11d
2.74e-44FFCP PHASE2:Mm9::chr9:121960329..121960336,-#_b487af833fb3944f88fc7040865f113cp@chr9:121960329..121960336, -
2.74e-44FFCP PHASE1:Mm9::chr4:56445929..56445936,-#_b487af833fb3944f88fc7040865f113cp@chr4:56445929..56445936, -
2.74e-44FFCP PHASE1:Mm9::chr5:86756768..86756782,-#_b487af833fb3944f88fc7040865f113cp2@Tmprss11d
2.74e-44FFCP PHASE2:Mm9::chr15:101520939..101520945,-#_b487af833fb3944f88fc7040865f113cp@chr15:101520939..101520945, -
2.74e-44FFCP PHASE1:Mm9::chr15:101520939..101520945,-#_b487af833fb3944f88fc7040865f113cp@chr15:101520939..101520945, -
2.74e-44FFCP PHASE1:Mm9::chr18:35502686..35502690,-#_b487af833fb3944f88fc7040865f113cp@chr18:35502686..35502690, -
2.74e-44FFCP PHASE2:Mm9::chr3:122788591..122788596,+#_b487af833fb3944f88fc7040865f113cp@chr3:122788591..122788596, +
2.74e-44FFCP PHASE1:Mm9::chr19:29939712..29939747,-#_b487af833fb3944f88fc7040865f113cp@chr19:29939712..29939747, -
2.74e-44FFCP PHASE2:Mm9::chr17:14398060..14398061,+#_b487af833fb3944f88fc7040865f113cp@chr17:14398060..14398061, +
2.74e-44FFCP PHASE1:Mm9::chr5:86802426..86802432,-#_b487af833fb3944f88fc7040865f113cp4@Tmprss11d
2.74e-44FFCP PHASE1:Mm9::chr9:121960329..121960336,-#_b487af833fb3944f88fc7040865f113cp@chr9:121960329..121960336, -
2.74e-44FFCP PHASE2:Mm9::chr7:50927615..50927622,-#_b487af833fb3944f88fc7040865f113cp@chr7:50927615..50927622, -
2.74e-44FFCP PHASE2:Mm9::chr3:120909250..120909282,-#_b487af833fb3944f88fc7040865f113cp@chr3:120909250..120909282, -
2.74e-44FFCP PHASE2:Mm9::chr15:101520635..101520643,-#_b487af833fb3944f88fc7040865f113cp@chr15:101520635..101520643, -
2.74e-44FFCP PHASE1:Mm9::chr15:101520635..101520643,-#_b487af833fb3944f88fc7040865f113cp@chr15:101520635..101520643, -
2.74e-44FFCP PHASE1:Mm9::chr3:120909250..120909282,-#_b487af833fb3944f88fc7040865f113cp@chr3:120909250..120909282, -
2.74e-44FFCP PHASE2:Mm9::chr4:56445929..56445936,-#_b487af833fb3944f88fc7040865f113cp@chr4:56445929..56445936, -
2.74e-44FFCP PHASE1:Mm9::chr17:31827369..31827371,-#_b487af833fb3944f88fc7040865f113cp@chr17:31827369..31827371, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000996&oldid=1835446"