CL:0000412: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 5: | Line 5: | ||
|def="A cell whose nucleus, or nuclei, each contain more than two haploid genomes." [FB:ma] | |def="A cell whose nucleus, or nuclei, each contain more than two haploid genomes." [FB:ma] | ||
|xref= | |xref= | ||
|is_a=CL: | |is_a=CL:0000003 | ||
|synonym= | |synonym= | ||
|comment= | |comment= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 17:25, 26 June 2012
| Name: | polyploid cell |
|---|---|
| Namespace: | cell |
| Definition: | "A cell whose nucleus, or nuclei, each contain more than two haploid genomes." [FB:ma] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
|---|
Children
| is a: | CL:0000417 (endopolyploid cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10484-107A7 (hepatoma cell line:Li-7)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 10632-108I2
- 10633-108I3 (hepatoblastoma cell line:HuH-6)
- 10706-109H4 (pleomorphic hepatocellular carcinoma cell line:SNU-387)
- 10746-110C8
- 10818-111B8 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1)
- 10819-111B9 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2)
... further results Mouse (Mus musculus)
- 10484-107A7 (hepatoma cell line:Li-7)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 10632-108I2
- 10633-108I3 (hepatoblastoma cell line:HuH-6)
- 10706-109H4 (pleomorphic hepatocellular carcinoma cell line:SNU-387)
- 10746-110C8
- 10818-111B8 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1)
- 10819-111B9 (hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000412 (polyploid cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
