Personal tools

CL:0002491: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 14: Line 14:
|obo_creation_date=2010-12-06T03:18:43Z
|obo_creation_date=2010-12-06T03:18:43Z
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=

Revision as of 17:27, 26 June 2012

Name:auditory epithelial cell
Namespace:cell
Definition:"A specialized cell involved in auditory sensory perception." [GOC:tfm]
Created by:tmeehan
Creation date:2010-12-06T03:18:43Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000098(sensory epithelial cell)



Children


is a:CL:0000202 (auditory hair cell),CL:0005014 (auditory epithelial support cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002491 (auditory epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_d8421a0cfd1b4c1125356250a3301f5bp11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_d8421a0cfd1b4c1125356250a3301f5bp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_d8421a0cfd1b4c1125356250a3301f5bp4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_d8421a0cfd1b4c1125356250a3301f5bp5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_d8421a0cfd1b4c1125356250a3301f5bp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_d8421a0cfd1b4c1125356250a3301f5bp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_d8421a0cfd1b4c1125356250a3301f5bp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_d8421a0cfd1b4c1125356250a3301f5bp1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_d8421a0cfd1b4c1125356250a3301f5bp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_d8421a0cfd1b4c1125356250a3301f5bp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_d8421a0cfd1b4c1125356250a3301f5bp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_d8421a0cfd1b4c1125356250a3301f5bp2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_d8421a0cfd1b4c1125356250a3301f5bp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_d8421a0cfd1b4c1125356250a3301f5bp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_d8421a0cfd1b4c1125356250a3301f5bp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_d8421a0cfd1b4c1125356250a3301f5bp10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_d8421a0cfd1b4c1125356250a3301f5bp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_d8421a0cfd1b4c1125356250a3301f5bp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_d8421a0cfd1b4c1125356250a3301f5bp10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_d8421a0cfd1b4c1125356250a3301f5bp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_d8421a0cfd1b4c1125356250a3301f5bp7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_d8421a0cfd1b4c1125356250a3301f5bp3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_d8421a0cfd1b4c1125356250a3301f5bp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_d8421a0cfd1b4c1125356250a3301f5bp3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_d8421a0cfd1b4c1125356250a3301f5bp7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_d8421a0cfd1b4c1125356250a3301f5bp6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_d8421a0cfd1b4c1125356250a3301f5bp2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_d8421a0cfd1b4c1125356250a3301f5bp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_d8421a0cfd1b4c1125356250a3301f5bp5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_d8421a0cfd1b4c1125356250a3301f5bp6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_d8421a0cfd1b4c1125356250a3301f5bp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_d8421a0cfd1b4c1125356250a3301f5bp4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_d8421a0cfd1b4c1125356250a3301f5bp9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_d8421a0cfd1b4c1125356250a3301f5bp2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_d8421a0cfd1b4c1125356250a3301f5bp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_d8421a0cfd1b4c1125356250a3301f5bp13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_d8421a0cfd1b4c1125356250a3301f5bp@chr3:100724698..100724706, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002491&oldid=1836820"