CL:0000243: Difference between revisions
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000339 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:00, 27 June 2012
| Name: | glial cell (sensu Vertebrata) |
|---|---|
| Namespace: | cell |
| Definition: | "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear." [MESH:A.08.637] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000125(glial cell) |
|---|---|
| develops_from: | CL:0000339(glioblast (sensu Vertebrata)) |
Children
| is a: | CL:0000126 (macroglial cell),CL:0000129 (microglial cell),CL:0002573 (Schwann cell) |
|---|---|
| derives from: | FF:0101531 (glial cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10442-106F1 (schwannoma cell line:HS-PSS)
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10559-108A1
- 10669-109D3
- 10670-109D4
... further results Mouse (Mus musculus)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10442-106F1 (schwannoma cell line:HS-PSS)
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10559-108A1
- 10669-109D3
- 10670-109D4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000243 (glial cell (sensu Vertebrata)), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.33e-61 | FFCP PHASE2:Mm9::chr8:28132545..28132551,+#_25b9e4f4a507a8423e9b66f775305097 | p@chr8:28132545..28132551, + |
| 8.33e-61 | FFCP PHASE1:Mm9::chr8:28132545..28132551,+#_25b9e4f4a507a8423e9b66f775305097 | p@chr8:28132545..28132551, + |
| 8.33e-61 | FFCP PHASE1:Mm9::chr1:72873192..72873206,+#_25b9e4f4a507a8423e9b66f775305097 | p@chr1:72873192..72873206, + |
| 8.33e-61 | FFCP PHASE2:Mm9::chr1:72873192..72873206,+#_25b9e4f4a507a8423e9b66f775305097 | p@chr1:72873192..72873206, + |
| 2.99e-58 | FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_2f848cb58d90a50746ea43821dad851b | p@chr4:169553987..169553999, + |
| 2.99e-58 | FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_2f848cb58d90a50746ea43821dad851b | p@chr4:169553987..169553999, + |
| 1.74e-53 | FFCP PHASE2:Mm9::chr19:8788816..8788826,-#_9e5905e017dfbe9eaadbd5fa28508969 | p14@Slc3a2 |
| 1.74e-53 | FFCP PHASE1:Mm9::chr19:8788816..8788826,-#_9e5905e017dfbe9eaadbd5fa28508969 | p14@Slc3a2 |
| 3.55e-53 | FFCP PHASE2:Mm9::chr8:11006242..11006246,-#_4f9734d0951ab9de564a8d9c359e0877 | p@chr8:11006242..11006246, - |
| 3.55e-53 | FFCP PHASE1:Mm9::chr8:11006242..11006246,-#_4f9734d0951ab9de564a8d9c359e0877 | p@chr8:11006242..11006246, - |
| 8.65e-48 | FFCP PHASE1:Mm9::chr8:96677906..96677921,-#_401289ae43e3b27fa5ed3d13ee088111 | p@chr8:96677906..96677921, - |
| 8.65e-48 | FFCP PHASE2:Mm9::chr19:8788794..8788806,-#_401289ae43e3b27fa5ed3d13ee088111 | p6@Slc3a2 |
| 8.65e-48 | FFCP PHASE2:Mm9::chr8:96677906..96677921,-#_401289ae43e3b27fa5ed3d13ee088111 | p@chr8:96677906..96677921, - |
| 8.65e-48 | FFCP PHASE2:Mm9::chr3:121130390..121130408,-#_401289ae43e3b27fa5ed3d13ee088111 | p@chr3:121130390..121130408, - |
| 8.65e-48 | FFCP PHASE1:Mm9::chr19:8788794..8788806,-#_401289ae43e3b27fa5ed3d13ee088111 | p6@Slc3a2 |
| 8.65e-48 | FFCP PHASE2:Mm9::chr8:96677795..96677811,+#_401289ae43e3b27fa5ed3d13ee088111 | p@chr8:96677795..96677811, + |
| 8.65e-48 | FFCP PHASE1:Mm9::chr8:96677795..96677811,+#_401289ae43e3b27fa5ed3d13ee088111 | p@chr8:96677795..96677811, + |
| 8.65e-48 | FFCP PHASE1:Mm9::chr3:121130390..121130408,-#_401289ae43e3b27fa5ed3d13ee088111 | p@chr3:121130390..121130408, - |
| 1.01e-47 | FFCP PHASE2:Mm9::chr11:102758074..102758083,+#_e97427cbf0655be91ed57ac9fd825ec6 | p@chr11:102758074..102758083, + |
| 1.01e-47 | FFCP PHASE1:Mm9::chr3:89028994..89029006,+#_e97427cbf0655be91ed57ac9fd825ec6 | p5@Thbs3 |
| 1.01e-47 | FFCP PHASE1:Mm9::chr11:102758074..102758083,+#_e97427cbf0655be91ed57ac9fd825ec6 | p@chr11:102758074..102758083, + |
| 1.01e-47 | FFCP PHASE2:Mm9::chr3:89028994..89029006,+#_e97427cbf0655be91ed57ac9fd825ec6 | p5@Thbs3 |
| 1.39e-47 | FFCP PHASE2:Mm9::chr14:122864178..122864180,+#_561fbe9b010a56c23f0034f7ddbe8957 | p@chr14:122864178..122864180, + |
| 1.39e-47 | FFCP PHASE1:Mm9::chr14:122864178..122864180,+#_561fbe9b010a56c23f0034f7ddbe8957 | p@chr14:122864178..122864180, + |
| 2.04e-46 | FFCP PHASE1:Hg19::chr1:98642833..98642844,+#_d7a170aa39ea7f8fe2736682783c083c | p@chr1:98642833..98642844, + |
| 2.04e-46 | FFCP PHASE2:Hg19::chr1:98642833..98642844,+#_d7a170aa39ea7f8fe2736682783c083c | p@chr1:98642833..98642844, + |
| 4.52e-45 | FFCP PHASE1:Mm9::chr9:37174919..37174932,+#_5c5084c751378b6c634f74466e9a8993 | p3@Hepacam |
| 4.52e-45 | FFCP PHASE2:Mm9::chr11:102807862..102807882,-#_5c5084c751378b6c634f74466e9a8993 | p4@C1ql1 |
| 4.52e-45 | FFCP PHASE2:Mm9::chr9:37174919..37174932,+#_5c5084c751378b6c634f74466e9a8993 | p3@Hepacam |
| 4.52e-45 | FFCP PHASE1:Mm9::chr11:102807862..102807882,-#_5c5084c751378b6c634f74466e9a8993 | p4@C1ql1 |
| 5.38e-45 | FFCP PHASE1:Mm9::chr11:102754827..102754845,-#_ecca5a885852ed2f7deb8fb0ad1e1042 | p@chr11:102754827..102754845, - |
| 5.38e-45 | FFCP PHASE2:Mm9::chr11:102754827..102754845,-#_ecca5a885852ed2f7deb8fb0ad1e1042 | p@chr11:102754827..102754845, - |
| 7.62e-45 | FFCP PHASE2:Mm9::chr14:70592626..70592638,-#_dda1f795f31a2720df876d0803aa276d | p@chr14:70592626..70592638, - |
| 7.62e-45 | FFCP PHASE1:Mm9::chr14:70592626..70592638,-#_dda1f795f31a2720df876d0803aa276d | p@chr14:70592626..70592638, - |
| 8.43e-44 | FFCP PHASE1:Mm9::chr8:73022520..73022524,+#_a764a533e181bdf59d3a96266f3baa55 | p@chr8:73022520..73022524, + |
| 8.43e-44 | FFCP PHASE2:Mm9::chr8:73022520..73022524,+#_a764a533e181bdf59d3a96266f3baa55 | p@chr8:73022520..73022524, + |
| 8.43e-44 | FFCP PHASE1:Mm9::chr16:15895800..15895814,-#_a764a533e181bdf59d3a96266f3baa55 | p@chr16:15895800..15895814, - |
| 8.43e-44 | FFCP PHASE1:Mm9::chr11:102749254..102749263,-#_a764a533e181bdf59d3a96266f3baa55 | p@chr11:102749254..102749263, - |
| 8.43e-44 | FFCP PHASE2:Mm9::chr11:102749254..102749263,-#_a764a533e181bdf59d3a96266f3baa55 | p@chr11:102749254..102749263, - |
| 8.43e-44 | FFCP PHASE1:Mm9::chr11:75244815..75244826,-#_a764a533e181bdf59d3a96266f3baa55 | p@chr11:75244815..75244826, - |
| 8.43e-44 | FFCP PHASE1:Mm9::chr3:88990698..88990709,+#_a764a533e181bdf59d3a96266f3baa55 | p@chr3:88990698..88990709, + |
| 8.43e-44 | FFCP PHASE2:Mm9::chr11:75244815..75244826,-#_a764a533e181bdf59d3a96266f3baa55 | p@chr11:75244815..75244826, - |
| 8.43e-44 | FFCP PHASE2:Mm9::chr16:15895800..15895814,-#_a764a533e181bdf59d3a96266f3baa55 | p@chr16:15895800..15895814, - |
| 8.43e-44 | FFCP PHASE2:Mm9::chr3:88990698..88990709,+#_a764a533e181bdf59d3a96266f3baa55 | p@chr3:88990698..88990709, + |
| 3.14e-43 | FFCP PHASE2:Mm9::chr8:96676892..96676904,+#_e9276af328dd5567ab38a0a0078ee589 | p@chr8:96676892..96676904, + |
| 3.14e-43 | FFCP PHASE1:Mm9::chr8:96676892..96676904,+#_e9276af328dd5567ab38a0a0078ee589 | p@chr8:96676892..96676904, + |
| 3.14e-43 | FFCP PHASE1:Mm9::chr8:93340930..93340944,-#_e9276af328dd5567ab38a0a0078ee589 | p@chr8:93340930..93340944, - |
| 3.14e-43 | FFCP PHASE2:Mm9::chr8:93340930..93340944,-#_e9276af328dd5567ab38a0a0078ee589 | p@chr8:93340930..93340944, - |
| 3.62e-43 | FFCP PHASE2:Mm9::chr3:89030096..89030118,+#_d2805021d407b47e80bd67ef9ca31039 | p4@Thbs3 |
| 3.62e-43 | FFCP PHASE1:Mm9::chr3:89030096..89030118,+#_d2805021d407b47e80bd67ef9ca31039 | p4@Thbs3 |
| 4.82e-43 | FFCP PHASE1:Mm9::chr12:112910294..112910300,-#_8b3696dd929ba7d48c925bd665bb4217 | p@chr12:112910294..112910300, - |
| 4.82e-43 | FFCP PHASE2:Mm9::chr12:112910294..112910300,-#_8b3696dd929ba7d48c925bd665bb4217 | p@chr12:112910294..112910300, - |
| 5.57e-43 | FFCP PHASE1:Mm9::chr11:102755848..102755857,-#_3e5e4258d15a3d733e8cb0870f17b6eb | p@chr11:102755848..102755857, - |
| 5.57e-43 | FFCP PHASE2:Mm9::chr11:102755848..102755857,-#_3e5e4258d15a3d733e8cb0870f17b6eb | p@chr11:102755848..102755857, - |
| 1.31e-42 | FFCP PHASE1:Mm9::chr7:148211055..148211073,+#_8171b15448be35da6b087042b33b4b21 | p@chr7:148211055..148211073, + |
| 1.31e-42 | FFCP PHASE2:Mm9::chr7:148211055..148211073,+#_8171b15448be35da6b087042b33b4b21 | p@chr7:148211055..148211073, + |
| 2.31e-42 | FFCP PHASE2:Mm9::chr2:11261132..11261153,+#_6ddb1f0a26abe505fe4ffd8e61ec0a85 | p2@Gm13293 |
| 2.31e-42 | FFCP PHASE1:Mm9::chr2:11261132..11261153,+#_6ddb1f0a26abe505fe4ffd8e61ec0a85 | p2@Gm13293 |
| 1.6e-40 | FFCP PHASE2:Mm9::chr1:174128350..174128367,+#_7d148f03c1c7e5a9665eac2fe4a4b558 | p@chr1:174128350..174128367, + |
| 1.6e-40 | FFCP PHASE1:Mm9::chr1:174128350..174128367,+#_7d148f03c1c7e5a9665eac2fe4a4b558 | p@chr1:174128350..174128367, + |
| 7.38e-40 | FFCP PHASE1:Mm9::chr1:72895848..72895864,+#_6e6115935f2c2e4ebc6cc63352a0afbd | p@chr1:72895848..72895864, + |
| 7.38e-40 | FFCP PHASE2:Mm9::chr1:72895848..72895864,+#_6e6115935f2c2e4ebc6cc63352a0afbd | p@chr1:72895848..72895864, + |
| 1.17e-39 | FFCP PHASE1:Mm9::chr3:88990668..88990679,+#_5c6405b581b3905693c318cf8058f3de | p@chr3:88990668..88990679, + |
| 1.17e-39 | FFCP PHASE2:Mm9::chr3:88990668..88990679,+#_5c6405b581b3905693c318cf8058f3de | p@chr3:88990668..88990679, + |
| 1.59e-39 | FFCP PHASE1:Mm9::chr19:8788690..8788697,-#_0d5f9fb8d47b15107a6d3d8e782baa50 | p17@Slc3a2 |
| 1.59e-39 | FFCP PHASE2:Mm9::chr19:8788690..8788697,-#_0d5f9fb8d47b15107a6d3d8e782baa50 | p17@Slc3a2 |
| 2.16e-39 | FFCP PHASE1:Mm9::chr8:96704054..96704065,-#_3f68f60f42d8a88ec7b7fbdccfa3cab2 | p@chr8:96704054..96704065, - |
| 2.16e-39 | FFCP PHASE2:Mm9::chr8:96704054..96704065,-#_3f68f60f42d8a88ec7b7fbdccfa3cab2 | p@chr8:96704054..96704065, - |
| 2.2e-39 | FFCP PHASE2:Mm9::chr1:174150595..174150602,-#_38964520d938b708e156148419df3fa4 | p@chr1:174150595..174150602, - |
| 2.2e-39 | FFCP PHASE1:Mm9::chr1:174150595..174150602,-#_38964520d938b708e156148419df3fa4 | p@chr1:174150595..174150602, - |
| 2.51e-39 | FFCP PHASE2:Mm9::chr16:15895858..15895888,-#_957de29cc0d3eb10372367e810fdbff4 | p@chr16:15895858..15895888, - |
| 2.51e-39 | FFCP PHASE2:Mm9::chr1:174128178..174128192,-#_957de29cc0d3eb10372367e810fdbff4 | p@chr1:174128178..174128192, - |
| 2.51e-39 | FFCP PHASE1:Mm9::chr1:174128178..174128192,-#_957de29cc0d3eb10372367e810fdbff4 | p@chr1:174128178..174128192, - |
| 2.51e-39 | FFCP PHASE1:Mm9::chr16:15895858..15895888,-#_957de29cc0d3eb10372367e810fdbff4 | p@chr16:15895858..15895888, - |
| 8.08e-39 | FFCP PHASE2:Mm9::chr1:72895732..72895747,-#_b5818b6309cd5216a72b45ba7798036c | p@chr1:72895732..72895747, - |
| 8.08e-39 | FFCP PHASE1:Mm9::chr1:72895732..72895747,-#_b5818b6309cd5216a72b45ba7798036c | p@chr1:72895732..72895747, - |
| 4.04e-38 | FFCP PHASE2:Mm9::chr19:12839908..12839933,-#_85671c5d2b08fae96f4b349b2314850d | p2@Cntf |
| 4.04e-38 | FFCP PHASE1:Mm9::chr19:12839908..12839933,-#_85671c5d2b08fae96f4b349b2314850d | p2@Cntf |
| 5.94e-38 | FFCP PHASE2:Mm9::chr1:72898598..72898634,+#_c52f2e329bcfc7250a51cd82b8a78686 | p@chr1:72898598..72898634, + |
| 5.94e-38 | FFCP PHASE1:Mm9::chr1:72898598..72898634,+#_c52f2e329bcfc7250a51cd82b8a78686 | p@chr1:72898598..72898634, + |
| 7.4e-38 | FFCP PHASE1:Mm9::chr1:72898658..72898669,+#_04b8ecb197b5a0a1f8f1dba64dc6edae | p@chr1:72898658..72898669, + |
| 7.4e-38 | FFCP PHASE2:Mm9::chr1:72898658..72898669,+#_04b8ecb197b5a0a1f8f1dba64dc6edae | p@chr1:72898658..72898669, + |
| 1.03e-37 | FFCP PHASE2:Mm9::chr11:88828250..88828258,-#_a8bfa43bd53a0a8f7c44276233e24f83 | p1@ENSMUST00000121228 |
| 1.03e-37 | FFCP PHASE1:Mm9::chr11:88828250..88828258,-#_a8bfa43bd53a0a8f7c44276233e24f83 | p1@ENSMUST00000121228 |
| 1.14e-37 | FFCP PHASE1:Hg19::chr4:177302052..177302063,+#_e1c34ff3298bdc2d71caf84727f14e1e | p@chr4:177302052..177302063, + |
| 1.14e-37 | FFCP PHASE2:Hg19::chr4:177302052..177302063,+#_e1c34ff3298bdc2d71caf84727f14e1e | p@chr4:177302052..177302063, + |
| 9.57e-37 | FFCP PHASE1:Mm9::chr11:102754448..102754459,-#_4aacf0d5d1b73a35483ca2c040ae0198 | p@chr11:102754448..102754459, - |
| 9.57e-37 | FFCP PHASE2:Mm9::chr11:102754448..102754459,-#_4aacf0d5d1b73a35483ca2c040ae0198 | p@chr11:102754448..102754459, - |
| 1.13e-36 | FFCP PHASE2:Mm9::chr4:153975408..153975411,+#_5af6f36fb840257ae658b1a9d1e57a3b | p1@ENSMUST00000132106 |
| 1.13e-36 | FFCP PHASE1:Mm9::chr4:153975408..153975411,+#_5af6f36fb840257ae658b1a9d1e57a3b | p1@ENSMUST00000132106 |
| 1.13e-36 | FFCP PHASE1:Mm9::chr14:70592673..70592699,-#_5af6f36fb840257ae658b1a9d1e57a3b | p@chr14:70592673..70592699, - |
| 1.13e-36 | FFCP PHASE1:Mm9::chr1:174128464..174128474,-#_5af6f36fb840257ae658b1a9d1e57a3b | p@chr1:174128464..174128474, - |
| 1.13e-36 | FFCP PHASE2:Mm9::chr1:174128464..174128474,-#_5af6f36fb840257ae658b1a9d1e57a3b | p@chr1:174128464..174128474, - |
| 1.13e-36 | FFCP PHASE1:Mm9::chr1:72895689..72895698,-#_5af6f36fb840257ae658b1a9d1e57a3b | p@chr1:72895689..72895698, - |
| 1.13e-36 | FFCP PHASE2:Mm9::chr14:70592673..70592699,-#_5af6f36fb840257ae658b1a9d1e57a3b | p@chr14:70592673..70592699, - |
| 1.13e-36 | FFCP PHASE2:Mm9::chr1:72895689..72895698,-#_5af6f36fb840257ae658b1a9d1e57a3b | p@chr1:72895689..72895698, - |
| 1.59e-36 | FFCP PHASE2:Mm9::chr1:72898643..72898650,+#_780e429ac0ca4487cfc393687fa44888 | p@chr1:72898643..72898650, + |
| 1.59e-36 | FFCP PHASE1:Mm9::chr1:72898728..72898736,+#_780e429ac0ca4487cfc393687fa44888 | p@chr1:72898728..72898736, + |
| 1.59e-36 | FFCP PHASE1:Mm9::chr1:72898643..72898650,+#_780e429ac0ca4487cfc393687fa44888 | p@chr1:72898643..72898650, + |
| 1.59e-36 | FFCP PHASE2:Mm9::chr1:72898728..72898736,+#_780e429ac0ca4487cfc393687fa44888 | p@chr1:72898728..72898736, + |
