Personal tools

CL:0002556: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0001758
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:04, 27 June 2012

Name:fibroblast of periodontium
Namespace:cell
Definition:"A fibroblast of the periodontium." [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-28T05:19:48Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000057(fibroblast)
part_of:UBERON:0001758(periodontium)



Children


derives from:FF:0000067 (human fibroblast of periodontium sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)

Mouse (Mus musculus)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002556 (fibroblast of periodontium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.06e-63FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_b41f1b1feb2c2ab125899bd48a5e9d9cp1@ENST00000427892, p1@uc001dgp.1
7.06e-63FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_b41f1b1feb2c2ab125899bd48a5e9d9cp1@ENST00000427892, p1@uc001dgp.1
1.23e-62FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_8e661015fd0b5a612ed76ffc704b9481p@chr1:75599683..75599699, -
1.23e-62FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_8e661015fd0b5a612ed76ffc704b9481p@chr1:75599683..75599699, -
2.45e-58FFCP PHASE2:Hg19::chr6:707779..707821,+#_cab180e6fe72130a97965bba91a2ee71p@chr6:707779..707821, +
2.45e-58FFCP PHASE1:Hg19::chr6:707779..707821,+#_cab180e6fe72130a97965bba91a2ee71p@chr6:707779..707821, +
4.63e-53FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_b95e84088c78b8eee2862bb535e2837fp@chr1:75599672..75599682, -
4.63e-53FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_b95e84088c78b8eee2862bb535e2837fp@chr1:75599672..75599682, -
9.31e-47FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_a6a6a6e91869cbc205c4593c684fef16p2@LHX8
9.31e-47FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_a6a6a6e91869cbc205c4593c684fef16p2@LHX8
4.34e-43FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_3102ef22116fe41869f6d8fd3273cabfp1@LHX8
4.34e-43FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_3102ef22116fe41869f6d8fd3273cabfp1@LHX8
1.34e-37FFCP PHASE1:Hg19::chr6:129908113..129908144,-#_2e90588e2aaa2ec8878e70a75da905a7p@chr6:129908113..129908144, -
1.34e-37FFCP PHASE2:Hg19::chr6:129908113..129908144,-#_2e90588e2aaa2ec8878e70a75da905a7p@chr6:129908113..129908144, -
5.69e-35FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_614d77c0c3c28d405d9f35f86e3b6b74p@chr2:172953513..172953549, -
5.69e-35FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_614d77c0c3c28d405d9f35f86e3b6b74p@chr2:172953513..172953549, -
1.19e-32FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_b03e1e8ccc7d84719d97fde9b0f8296fp4@FOXF2
1.19e-32FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_b03e1e8ccc7d84719d97fde9b0f8296fp4@FOXF2
2.68e-31FFCP PHASE1:Hg19::chr18:34273182..34273194,+#_65e6d8173825ffbf96119fd5fdfa1486p6@FHOD3
2.68e-31FFCP PHASE2:Hg19::chr18:34273182..34273194,+#_65e6d8173825ffbf96119fd5fdfa1486p6@FHOD3
2.78e-30FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_4e853d1b18fe0d645dfc0609394b8e49p18@SH3D19
2.78e-30FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_4e853d1b18fe0d645dfc0609394b8e49p18@SH3D19
7.33e-29FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_1f081cb045269195db43207c51a7b7ddp@chr6:1389613..1389637, -
7.33e-29FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_1f081cb045269195db43207c51a7b7ddp@chr6:1389613..1389637, -
2.08e-27FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_0c2d245380ddbc9f4fd624cc3681515ep@chr12:115777087..115777091, +
2.08e-27FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_0c2d245380ddbc9f4fd624cc3681515ep@chr12:115777087..115777091, +
2.21e-25FFCP PHASE1:Hg19::chr11:7987028..7987043,-#_b6e86d866874760306b12794559bbcd6p2@NLRP10
2.21e-25FFCP PHASE2:Hg19::chr11:7987028..7987043,-#_b6e86d866874760306b12794559bbcd6p2@NLRP10
4.34e-23FFCP PHASE1:Hg19::chr1:75600979..75601005,+#_ec800fe940c2a9dc0ab60ebb09e42196p@chr1:75600979..75601005, +
4.34e-23FFCP PHASE2:Hg19::chr1:75600979..75601005,+#_ec800fe940c2a9dc0ab60ebb09e42196p@chr1:75600979..75601005, +
3.51e-22FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_8be1873c0438b21dc89ee5e4f64353d7p@chr18:65337698..65337712, +
3.51e-22FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_8be1873c0438b21dc89ee5e4f64353d7p@chr18:65337698..65337712, +
6.23e-22FFCP PHASE1:Hg19::chr1:31882992..31883005,+#_9f85c25ab7642c0e812a1e15fe5fc078p14@SERINC2
6.23e-22FFCP PHASE2:Hg19::chr1:31882992..31883005,+#_9f85c25ab7642c0e812a1e15fe5fc078p14@SERINC2
4.63e-21FFCP PHASE1:Hg19::chr9:96717678..96717689,-#_e9d52dd3112935b7c616c14c169f30a0p2@BARX1
4.63e-21FFCP PHASE2:Hg19::chr9:96717678..96717689,-#_e9d52dd3112935b7c616c14c169f30a0p2@BARX1
5.39e-21FFCP PHASE1:Hg19::chr10:28034772..28034783,-#_d4dc452f0b2a4783d312b872fd1d91c9p4@MKX
5.39e-21FFCP PHASE2:Hg19::chr10:28034772..28034783,-#_d4dc452f0b2a4783d312b872fd1d91c9p4@MKX
4.99e-20FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_f2ba862d71e50329fe9080f21d370eb7p2@PAX9
4.99e-20FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_f2ba862d71e50329fe9080f21d370eb7p2@PAX9
5.89e-20FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_ce219e61647b0ba27fe9cb2036a68ea5p@chr1:75602768..75602785, +
5.89e-20FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_ce219e61647b0ba27fe9cb2036a68ea5p@chr1:75602768..75602785, +
6.5e-20FFCP PHASE2:Hg19::chr6:148761434..148761452,+#_e5706d1241c3c078ed07275ebe2e440bp11@SASH1
6.5e-20FFCP PHASE1:Hg19::chr6:148761434..148761452,+#_e5706d1241c3c078ed07275ebe2e440bp11@SASH1
3.13e-18FFCP PHASE2:Hg19::chr8:57354324..57354335,-#_14cb9fb48e56ed00bb401827dc5697e6p@chr8:57354324..57354335, -
3.13e-18FFCP PHASE1:Hg19::chr8:57354324..57354335,-#_14cb9fb48e56ed00bb401827dc5697e6p@chr8:57354324..57354335, -
3.96e-18FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_4e68e276756fcb659c9d40c08c7b5efap@chr1:83982415..83982420, +
3.96e-18FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_4e68e276756fcb659c9d40c08c7b5efap@chr1:83982415..83982420, +
4.73e-18FFCP PHASE1:Hg19::chr10:24738381..24738397,+#_8dfde6990832a51ed59150d6edd5badfp17@KIAA1217
4.73e-18FFCP PHASE2:Hg19::chr10:24738381..24738397,+#_8dfde6990832a51ed59150d6edd5badfp17@KIAA1217
6.46e-18FFCP PHASE1:Hg19::chr4:108204864..108204887,-#_55457c4509a5d6b6f7de2ae7d6d6b90cp3@DKK2
6.46e-18FFCP PHASE2:Hg19::chr4:108204864..108204887,-#_55457c4509a5d6b6f7de2ae7d6d6b90cp3@DKK2
9.07e-18FFCP PHASE2:Hg19::chr4:14094655..14094663,+#_b4a774b186b3e0c32482268f0b7afa3ep@chr4:14094655..14094663, +
9.07e-18FFCP PHASE1:Hg19::chr1:75602005..75602017,+#_b4a774b186b3e0c32482268f0b7afa3ep@chr1:75602005..75602017, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602005..75602017,+#_b4a774b186b3e0c32482268f0b7afa3ep@chr1:75602005..75602017, +
9.07e-18FFCP PHASE1:Hg19::chr1:75602749..75602758,+#_b4a774b186b3e0c32482268f0b7afa3ep@chr1:75602749..75602758, +
9.07e-18FFCP PHASE2:Hg19::chr1:75602749..75602758,+#_b4a774b186b3e0c32482268f0b7afa3ep@chr1:75602749..75602758, +
9.07e-18FFCP PHASE1:Hg19::chr4:14094655..14094663,+#_b4a774b186b3e0c32482268f0b7afa3ep@chr4:14094655..14094663, +
9.28e-18FFCP PHASE2:Hg19::chr6:116479897..116479942,-#_5c1b9ba2c536782e42ad333191fa8b04p2@COL10A1
9.28e-18FFCP PHASE1:Hg19::chr6:116479897..116479942,-#_5c1b9ba2c536782e42ad333191fa8b04p2@COL10A1
1.22e-17FFCP PHASE2:Hg19::chr10:15761954..15761965,-#_5afa52781077f9c320ca3e8b450b02e7p7@ITGA8
1.22e-17FFCP PHASE1:Hg19::chr10:15761954..15761965,-#_5afa52781077f9c320ca3e8b450b02e7p7@ITGA8
1.85e-17FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_8b1724ba86d9134d12cb18946cbe54b5p@chr1:241577071..241577081, +
1.85e-17FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_8b1724ba86d9134d12cb18946cbe54b5p@chr1:241577071..241577081, +
3.81e-17FFCP PHASE1:Hg19::chr6:1389647..1389668,-#_fa08bb518c0d9cab2ff752d92d81105bp@chr6:1389647..1389668, -
3.81e-17FFCP PHASE2:Hg19::chr6:1389647..1389668,-#_fa08bb518c0d9cab2ff752d92d81105bp@chr6:1389647..1389668, -
4.15e-17FFCP PHASE1:Hg19::chr1:68257383..68257394,-#_4a120f360e13e1c636b8951d0bbe344ap@chr1:68257383..68257394, -
4.15e-17FFCP PHASE2:Hg19::chr1:68257383..68257394,-#_4a120f360e13e1c636b8951d0bbe344ap@chr1:68257383..68257394, -
6.03e-17FFCP PHASE1:Hg19::chr6:148761457..148761478,+#_154b2c689388e1bb21da5c81b4745aa1p8@SASH1
6.03e-17FFCP PHASE2:Hg19::chr6:148761457..148761478,+#_154b2c689388e1bb21da5c81b4745aa1p8@SASH1
2.11e-16FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_785d33213671fa726e5343f5f1574b4dp@chr4:47857451..47857469, -
2.11e-16FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_785d33213671fa726e5343f5f1574b4dp@chr4:47857451..47857469, -
2.59e-16FFCP PHASE1:Hg19::chr15:33406335..33406350,-#_f24fc7d3eeb6673062683738e5510c49p@chr15:33406335..33406350, -
2.59e-16FFCP PHASE2:Hg19::chr15:33406335..33406350,-#_f24fc7d3eeb6673062683738e5510c49p@chr15:33406335..33406350, -
3.17e-16FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_bf9d9b0a579274fdad582ca438375865p1@ENST00000555639
3.17e-16FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_bf9d9b0a579274fdad582ca438375865p1@ENST00000555639
4.64e-16FFCP PHASE1:Hg19::chr18:34273196..34273214,+#_5f16840b63589af4f282a0dc68433914p2@FHOD3
4.64e-16FFCP PHASE2:Hg19::chr18:34273196..34273214,+#_5f16840b63589af4f282a0dc68433914p2@FHOD3
7.23e-16FFCP PHASE1:Hg19::chr3:37204870..37204881,-#_c29ca3c5ca8ae872a4708804884f1363p@chr3:37204870..37204881, -
7.23e-16FFCP PHASE2:Hg19::chr3:37204870..37204881,-#_c29ca3c5ca8ae872a4708804884f1363p@chr3:37204870..37204881, -
1.02e-15FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_4051fbc44359416383a78ef14ca7764ep1@ENST00000449986
1.02e-15FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_4051fbc44359416383a78ef14ca7764ep1@ENST00000449986
1.12e-15FFCP PHASE1:Hg19::chr4:152090554..152090566,+#_7eda14d47605380c1ebce42686b648e5p@chr4:152090554..152090566, +
1.12e-15FFCP PHASE2:Hg19::chr4:152090554..152090566,+#_7eda14d47605380c1ebce42686b648e5p@chr4:152090554..152090566, +
1.13e-15FFCP PHASE1:Hg19::chr18:59685444..59685459,-#_ff2c825cbb95c018b9b364ac182caea5p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE1:Hg19::chr8:57354211..57354220,+#_ff2c825cbb95c018b9b364ac182caea5p@chr8:57354211..57354220, +
1.13e-15FFCP PHASE2:Hg19::chr18:59685444..59685459,-#_ff2c825cbb95c018b9b364ac182caea5p@chr18:59685444..59685459, -
1.13e-15FFCP PHASE2:Hg19::chr8:57354211..57354220,+#_ff2c825cbb95c018b9b364ac182caea5p@chr8:57354211..57354220, +
1.31e-15FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_9275fd85d78cfc7b78d4fef133bda769p4@LHX8
1.31e-15FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_9275fd85d78cfc7b78d4fef133bda769p4@LHX8
1.31e-15FFCP PHASE1:Hg19::chr4:13890014..13890023,+#_9275fd85d78cfc7b78d4fef133bda769p@chr4:13890014..13890023, +
1.31e-15FFCP PHASE2:Hg19::chr4:13890014..13890023,+#_9275fd85d78cfc7b78d4fef133bda769p@chr4:13890014..13890023, +
2.33e-15FFCP PHASE1:Hg19::chr10:28033614..28033628,-#_c80cbfa465f820d96fbde12296a3a8e6p@chr10:28033614..28033628, -
2.33e-15FFCP PHASE2:Hg19::chr10:28033614..28033628,-#_c80cbfa465f820d96fbde12296a3a8e6p@chr10:28033614..28033628, -
4.6e-15FFCP PHASE1:Hg19::chr8:57354251..57354262,-#_c81ef4d8cc17eaff90247c8be691c1ccp@chr8:57354251..57354262, -
4.6e-15FFCP PHASE2:Hg19::chr8:57354251..57354262,-#_c81ef4d8cc17eaff90247c8be691c1ccp@chr8:57354251..57354262, -
5.3e-15FFCP PHASE1:Hg19::chr7:134005080..134005095,-#_c21794f584a6eb622e055f1314cce94dp@chr7:134005080..134005095, -
5.3e-15FFCP PHASE2:Hg19::chr7:134005080..134005095,-#_c21794f584a6eb622e055f1314cce94dp@chr7:134005080..134005095, -
5.54e-15FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_9dac96cca2482d77c51708f1c5087055p@chr17:78808278..78808309, -
5.54e-15FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_9dac96cca2482d77c51708f1c5087055p@chr17:78808278..78808309, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002556&oldid=1837155"