UBERON:0011143: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0011143
|name=upper urinary tract
|namespace=
|def="Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658]
|xref=FMA...") |
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|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001008 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
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}} | }} | ||
Revision as of 13:46, 27 June 2012
| Name: | upper urinary tract | ||
|---|---|---|---|
| Definition: | "Subdivision of urinary system which consists of the kidney and the ureters." [FMA:45658] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| part of: | UBERON:0000056 (ureter),UBERON:0002113 (kidney) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10318-105A3
- 10346-105D4
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
... further results Mouse (Mus musculus)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10290-104G2
- 10318-105A3
- 10346-105D4
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0011143 (upper urinary tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.73e-86 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_75e446fbffe3ca28a48ef0edb2894e00 | p4@PAX2 |
| 1.73e-86 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_75e446fbffe3ca28a48ef0edb2894e00 | p4@PAX2 |
| 2.28e-80 | FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_ae39705b8b761ce3522487e5024220af | p6@Hoxd8 |
| 2.28e-80 | FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_ae39705b8b761ce3522487e5024220af | p6@Hoxd8 |
| 3.64e-74 | FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_2c18d07a9c7112152eb67eb1d63c205b | p8@Hoxd8 |
| 3.64e-74 | FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_2c18d07a9c7112152eb67eb1d63c205b | p8@Hoxd8 |
| 5.03e-73 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_ac6298361e498bdcdfa569aff3813e61 | p3@PAX2 |
| 5.03e-73 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_ac6298361e498bdcdfa569aff3813e61 | p3@PAX2 |
| 3.13e-70 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_ca757ef2b7faa1e9fbfdbed4dc5e1964 | p@chr2:693380..693398, + |
| 3.13e-70 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_ca757ef2b7faa1e9fbfdbed4dc5e1964 | p@chr2:693380..693398, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_08b9d3138d2d598236f67280c2365a58 | p@chr19:44824107..44824111, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_08b9d3138d2d598236f67280c2365a58 | p@chr19:44824107..44824111, - |
| 6.57e-66 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_9897567055806f0d8d1d1e7e3b9ffbec | p7@HOXA10 |
| 6.57e-66 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_9897567055806f0d8d1d1e7e3b9ffbec | p7@HOXA10 |
| 2.27e-64 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_5bd931e6def964bd88e9aa6458a7fe25 | p2@PAX2 |
| 2.27e-64 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_5bd931e6def964bd88e9aa6458a7fe25 | p2@PAX2 |
| 2.61e-63 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_c393c1e6ca4674208e458f1091ef907c | p4@AIF1L |
| 2.61e-63 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_c393c1e6ca4674208e458f1091ef907c | p4@AIF1L |
| 9.07e-63 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_a348d94213d26d389f12a01874ca4042 | p1@ENST00000418041, p1@ENST00000443104 |
| 9.07e-63 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_a348d94213d26d389f12a01874ca4042 | p1@ENST00000418041, p1@ENST00000443104 |
| 1.43e-62 | FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_be305297836512866ace6909dfbfd926 | p@chr10:3291561..3291580, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_be305297836512866ace6909dfbfd926 | p@chr10:3291561..3291580, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_6f34d5b4f77cc58de1becc4b6b0fd032 | p@chr19:44821149..44821161, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_6f34d5b4f77cc58de1becc4b6b0fd032 | p@chr19:44899724..44899728, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_6f34d5b4f77cc58de1becc4b6b0fd032 | p@chr19:44821149..44821161, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_6f34d5b4f77cc58de1becc4b6b0fd032 | p@chr19:44899724..44899728, + |
| 4.78e-61 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_8201cbfe4b535693de410310f7ebc54f | p4@MEGF11 |
| 4.78e-61 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_8201cbfe4b535693de410310f7ebc54f | p4@MEGF11 |
| 1.07e-59 | FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_2350b37b1823b627b5e09ea4a7be8a2d | p@chr8:107148422..107148433, + |
| 1.07e-59 | FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_2350b37b1823b627b5e09ea4a7be8a2d | p@chr8:107148422..107148433, + |
| 6.23e-58 | FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_286ceff5129f338bfd518b05659b4fc9 | p@chr10:50689167..50689171, + |
| 6.23e-58 | FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_286ceff5129f338bfd518b05659b4fc9 | p@chr10:50689167..50689171, + |
| 8.0e-58 | FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_4d61a359d882cd35321c9788018c8b42 | p@chr5:24755801..24755819, + |
| 8.0e-58 | FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_4d61a359d882cd35321c9788018c8b42 | p@chr5:24755801..24755819, + |
| 1.03e-57 | FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_03dbc3f6a0b2e8a9b0c87edd4606c68c | p@chr19:59532611..59532623, + |
| 1.03e-57 | FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_03dbc3f6a0b2e8a9b0c87edd4606c68c | p@chr19:59532611..59532623, + |
| 2.2e-56 | FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_5c08bb000409d183e2aa0dd0a17013f8 | p1@ENSMUST00000154177 |
| 2.2e-56 | FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_5c08bb000409d183e2aa0dd0a17013f8 | p1@ENSMUST00000154177 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_bc56062f03fa79d560f600aabb449acc | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_bc56062f03fa79d560f600aabb449acc | p7@Steap2 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_bc56062f03fa79d560f600aabb449acc | p@chr10:39251651..39251690, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_bc56062f03fa79d560f600aabb449acc | p4@Ros1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_bc56062f03fa79d560f600aabb449acc | p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_bc56062f03fa79d560f600aabb449acc | p@chr10:79277411..79277429, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_bc56062f03fa79d560f600aabb449acc | p@chr10:79277411..79277429, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_bc56062f03fa79d560f600aabb449acc | p@chr19:17554168..17554181, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_bc56062f03fa79d560f600aabb449acc | p7@Steap2 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_bc56062f03fa79d560f600aabb449acc | p@chr19:17554168..17554181, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_bc56062f03fa79d560f600aabb449acc | p@chr2:74971765..74971779, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_bc56062f03fa79d560f600aabb449acc | p2@Nphs1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_bc56062f03fa79d560f600aabb449acc | p2@Nphs1 |
| 9.89e-56 | FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_bc56062f03fa79d560f600aabb449acc | p@chr10:50622895..50622905, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_bc56062f03fa79d560f600aabb449acc | p@chr7:47891824..47891827, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_bc56062f03fa79d560f600aabb449acc | p3@uc009jll.1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_bc56062f03fa79d560f600aabb449acc | p@chr10:50622895..50622905, + |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_bc56062f03fa79d560f600aabb449acc | p@chr10:39251651..39251690, + |
| 9.89e-56 | FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_bc56062f03fa79d560f600aabb449acc | p@chr7:47891824..47891827, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_bc56062f03fa79d560f600aabb449acc | p3@uc009jll.1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_bc56062f03fa79d560f600aabb449acc | p@chr8:118959620..118959632, - |
| 9.89e-56 | FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_bc56062f03fa79d560f600aabb449acc | p4@Ros1 |
| 9.89e-56 | FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_bc56062f03fa79d560f600aabb449acc | p@chr2:74971765..74971779, - |
| 9.89e-56 | FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_bc56062f03fa79d560f600aabb449acc | p@chr8:118959620..118959632, - |
| 1.76e-55 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_868db192d9fb29259acdc1179949d9f2 | p@chr18:3456189..3456200, + |
| 1.76e-55 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_868db192d9fb29259acdc1179949d9f2 | p@chr18:3456189..3456200, + |
| 3.07e-55 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_b2e1beb2c4673cbdfcd4ff9ca8c3df28 | p@chr9:119741711..119741743, - |
| 3.07e-55 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_b2e1beb2c4673cbdfcd4ff9ca8c3df28 | p@chr9:119741711..119741743, - |
| 6.17e-52 | FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_56c24d6b52e6257641d3103629ce76c8 | p@chr11:75720190..75720216, - |
| 6.17e-52 | FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_56c24d6b52e6257641d3103629ce76c8 | p@chr11:75720190..75720216, - |
| 6.97e-52 | FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_315a9d28c8a2e982bfed6db626ebd81d | p3@2810008M24Rik |
| 6.97e-52 | FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_315a9d28c8a2e982bfed6db626ebd81d | p3@2810008M24Rik |
| 1.64e-51 | FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_c137bbe666daf32b0c77c48080e84c3d | p1@ENSMUST00000143898 |
| 1.64e-51 | FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_c137bbe666daf32b0c77c48080e84c3d | p1@ENSMUST00000143898 |
| 6.24e-51 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_cd43caa1a5a6ebf6cc20ef37fcf556fa | p@chr7:7606139..7606151, - |
| 6.24e-51 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_cd43caa1a5a6ebf6cc20ef37fcf556fa | p@chr7:7606139..7606151, - |
| 1.67e-50 | FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_628049f1ff61a153fab37d90ea2c48fc | p4@Pdzk1 |
| 1.67e-50 | FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_628049f1ff61a153fab37d90ea2c48fc | p4@Pdzk1 |
| 2.31e-50 | FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_76e128ef2cfb88ca4bdfbac6cd331a08 | p8@Rgnef |
| 2.31e-50 | FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_76e128ef2cfb88ca4bdfbac6cd331a08 | p8@Rgnef |
| 2.36e-50 | FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_e159352304f32ea4c83f36da84f410ea | p5@Cldn8 |
| 2.36e-50 | FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_e159352304f32ea4c83f36da84f410ea | p5@Cldn8 |
| 2.38e-50 | FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_52766fc5d94d7fab0c08587053123f1c | p@chr3:154257229..154257241, - |
| 2.38e-50 | FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_52766fc5d94d7fab0c08587053123f1c | p2@uc009jll.1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_52766fc5d94d7fab0c08587053123f1c | p@chr3:154257229..154257241, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_52766fc5d94d7fab0c08587053123f1c | p@chr10:12353875..12353921, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_52766fc5d94d7fab0c08587053123f1c | p4@Nphs1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_52766fc5d94d7fab0c08587053123f1c | p@chr10:12353875..12353921, - |
| 2.38e-50 | FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_52766fc5d94d7fab0c08587053123f1c | p2@uc009jll.1 |
| 2.38e-50 | FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_52766fc5d94d7fab0c08587053123f1c | p4@Nphs1 |
| 3.53e-50 | FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_2f5e00debf3400bf9a729c4bed86c6ef | p@chr10:3291584..3291599, + |
| 3.53e-50 | FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_2f5e00debf3400bf9a729c4bed86c6ef | p@chr10:3291584..3291599, + |
| 5.98e-50 | FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_b05f13df6d0baea624652eaa2aca6bef | p9@Ppt2 |
| 5.98e-50 | FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_b05f13df6d0baea624652eaa2aca6bef | p9@Ppt2 |
| 6.48e-50 | FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_b3dcd1793130b36e22393a30cd024569 | p5@Scp2 |
| 6.48e-50 | FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_b3dcd1793130b36e22393a30cd024569 | p5@Scp2 |
| 7.43e-50 | FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_67a2a73143bc7627fceaa364fc8ccfab | p7@Hoxd8 |
| 7.43e-50 | FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_67a2a73143bc7627fceaa364fc8ccfab | p7@Hoxd8 |
| 1.21e-49 | FFCP PHASE1:Mm9::chr16:26463232..26463247,+#_f436e0b5576c540283f66e43c359f696 | p3@Cldn16 |
| 1.21e-49 | FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_f436e0b5576c540283f66e43c359f696 | p@chr6:83708841..83708859, + |
| 1.21e-49 | FFCP PHASE1:Mm9::chr2:124984656..124984673,+#_f436e0b5576c540283f66e43c359f696 | p@chr2:124984656..124984673, + |
| 1.21e-49 | FFCP PHASE1:Mm9::chr6:129464470..129464474,+#_f436e0b5576c540283f66e43c359f696 | p@chr6:129464470..129464474, + |
